CRAN Package Check Results for Maintainer ‘Henrik Bengtsson <henrikb at braju.com>’

Last updated on 2026-04-28 10:51:46 CEST.

Package ERROR NOTE OK
ACNE 13
aroma.affymetrix 13
aroma.apd 13
aroma.cn 13
aroma.core 1 12
calmate 2 11
dChipIO 13
doFuture 13
future 13
future.apply 13
future.batchtools 1 12
future.callr 13
future.mirai 13
future.tests 13
futureverse 13
futurize 13
globals 13
listenv 13
matrixStats 13
parallelly 1 12
port4me 13
profmem 13
progressify 13
progressr 13
PSCBS 13
R.cache 13
R.devices 5 8
R.filesets 13
R.huge 13
R.matlab 13
R.methodsS3 2 11
R.oo 13
R.rsp 13
R.utils 13
seguid 13
startup 13
TopDom 13

Package ACNE

Current CRAN status: OK: 13

Package aroma.affymetrix

Current CRAN status: OK: 13

Package aroma.apd

Current CRAN status: OK: 13

Package aroma.cn

Current CRAN status: OK: 13

Package aroma.core

Current CRAN status: NOTE: 1, OK: 12

Version: 3.3.2
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Henrik Bengtsson <henrikb@braju.com>’ Additional repositories with no packages: https://r-forge.r-project.org Flavor: r-devel-linux-x86_64-debian-gcc

Package calmate

Current CRAN status: NOTE: 2, OK: 11

Version: 0.13.0
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Henrik Bengtsson <henrikb@braju.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package dChipIO

Current CRAN status: OK: 13

Package doFuture

Current CRAN status: OK: 13

Package future

Current CRAN status: OK: 13

Package future.apply

Current CRAN status: OK: 13

Package future.batchtools

Current CRAN status: ERROR: 1, OK: 12

Version: 0.21.0
Check: tests
Result: ERROR Running ‘test-BatchtoolsFuture,gc.R’ [5s/6s] Running ‘test-BatchtoolsFuture.R’ [6s/9s] Running ‘test-BatchtoolsFutureError.R’ [7s/9s] Running ‘test-batchtools_bash.R’ [1s/2s] Running ‘test-batchtools_custom.R’ [11s/14s] Running ‘test-batchtools_hpc.R’ [1s/2s] Running ‘test-batchtools_interactive.R’ [3s/4s] Running ‘test-batchtools_local.R’ [9s/12s] Running ‘test-batchtools_multicore.R’ [1s/2s] Running ‘test-batchtools_ssh.R’ [3s/5s] Running ‘test-batchtools_template.R’ [1s/2s] Running ‘test-demo.R’ [9s/13s] Running ‘test-dotdotdot.R’ [8s/13s] Running ‘test-future,labels.R’ [8s/12s] Running ‘test-future,lazy.R’ [5s/7s] Running ‘test-globals,formulas.R’ [20s/29s] Running ‘test-globals,manual.R’ [8s/12s] Running ‘test-globals,subassignment.R’ [15s/22s] Running ‘test-globals,tricky.R’ [17s/23s] Running ‘test-nbrOfWorkers.R’ [1s/2s] Running ‘test-plan.R’ [6s/8s] Running ‘test-resources_OP.R’ [3s/4s] Running ‘test-rng.R’ [17s/24s] Running ‘test-stdout.R’ [12s/17s] Running ‘test-utils.R’ [1s/2s] Running ‘test-zzz,future_lapply.R’ [30s/41s] Running ‘test-zzz.onUnload.R’ [1s/2s] Running the tests in ‘tests/test-globals,manual.R’ failed. Complete output: > ## This runs testme test script inst/testme/test-globals,manual.R > ## Don't edit - it was autogenerated by inst/testme/deploy.R > future.batchtools:::testme("globals,manual") Test 'globals,manual' ... Sourcing 9 prologue scripts ... 01/09 prologue script '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/future.batchtools/testme/_prologue/001.load.R' 02/09 prologue script '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/future.batchtools/testme/_prologue/002.record-state.R' 03/09 prologue script '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/future.batchtools/testme/_prologue/030.imports.R' 04/09 prologue script '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/future.batchtools/testme/_prologue/050.utils.R' 05/09 prologue script '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/future.batchtools/testme/_prologue/090.context.R' 06/09 prologue script '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/future.batchtools/testme/_prologue/090.options.R' 07/09 prologue script '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/future.batchtools/testme/_prologue/091.envvars.R' 08/09 prologue script '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/future.batchtools/testme/_prologue/099.future-setup.R' 09/09 prologue script '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/future.batchtools/testme/_prologue/995.detrius-connections.R' Sourcing 9 prologue scripts ... done Running test script: '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/future.batchtools/testme/test-globals,manual.R' > library(future) > plan(future.batchtools::batchtools_local) > message("*** Globals - manually ...") *** Globals - manually ... > message("*** Globals manually specified as named list ...") *** Globals manually specified as named list ... > globals <- list(a = 1, b = 2, sumtwo = function(x) x[1] + + x[2]) > attach_locally(globals) > v0 <- local({ + x <- 1:10 + sumtwo(a + b * x) + }) > message("*** Globals - automatic ...") *** Globals - automatic ... > attach_locally(globals) > f <- future({ + x <- 1:10 + sumtwo(a + b * x) + }, globals = TRUE) > rm(list = names(globals)) > y <- value(f) > print(y) [1] 8 > stopifnot(all.equal(y, v0)) > attach_locally(globals) > y %<-% { + x <- 1:10 + sumtwo(a + b * x) + } %globals% TRUE > rm(list = names(globals)) > print(y) [1] 8 > stopifnot(all.equal(y, v0)) > y %<-% { + 1 + } %globals% FALSE > print(y) [1] 1 > stopifnot(identical(y, 1)) > attach_locally(globals) > f <- future({ + x <- 1:10 + sumtwo(a + b * x) + }, globals = FALSE) > rm(list = names(globals)) > y <- tryCatch(value(f), error = identity) Warning in delete.BatchtoolsFuture(future) : Will not remove batchtools registry, because the status of the batchtools was 'error', 'defined', 'finished', 'started', 'submitted' and future backend argument 'delete' is 'on-success': '/home/hornik/tmp/scratch/RtmpmNM1IJ/.future/20260424_023528-mNM1IJ/batchtools_1577297635' > if (!inherits(f, c("SequentialFuture", "MulticoreFuture"))) { + stopifnot(inherits(y, "simpleError")) + } Error: inherits(y, "simpleError") is not TRUE Execution halted Warning in delete.BatchtoolsFuture(f, onRunning = "skip", onMissing = "ignore", : Will not remove batchtools registry, because the status of the batchtools was 'error', 'defined', 'finished', 'started', 'submitted' and future backend argument 'delete' is 'on-success': '/home/hornik/tmp/scratch/RtmpmNM1IJ/.future/20260424_023528-mNM1IJ/batchtools_1577297635' Flavor: r-devel-linux-x86_64-debian-clang

Package future.callr

Current CRAN status: OK: 13

Package future.mirai

Current CRAN status: OK: 13

Package future.tests

Current CRAN status: OK: 13

Package futureverse

Current CRAN status: OK: 13

Package futurize

Current CRAN status: OK: 13

Package globals

Current CRAN status: OK: 13

Package listenv

Current CRAN status: OK: 13

Package matrixStats

Current CRAN status: OK: 13

Package parallelly

Current CRAN status: ERROR: 1, OK: 12

Version: 1.47.0
Check: whether package can be installed
Result: ERROR Installation failed. Flavor: r-devel-windows-x86_64

Package port4me

Current CRAN status: OK: 13

Package profmem

Current CRAN status: OK: 13

Package progressify

Current CRAN status: OK: 13

Package progressr

Current CRAN status: OK: 13

Package PSCBS

Current CRAN status: OK: 13

Package R.cache

Current CRAN status: OK: 13

Package R.devices

Current CRAN status: ERROR: 5, OK: 8

Version: 2.17.3
Check: tests
Result: ERROR Running ‘DevEvalFileProduct.R’ [1s/1s] Running ‘DevEvalProduct.R’ [1s/1s] Running ‘capabilitiesX11.R’ [1s/2s] Running ‘capturePlot.R’ [1s/1s] Running ‘dataURI.R’ [1s/1s] Running ‘devAll.R’ [1s/1s] Running ‘devDump.R’ [0s/1s] Running ‘devEqualTypes.R’ [1s/1s] Running ‘devEval,error.R’ [1s/1s] Running ‘devEval.R’ [2s/5s] Running ‘devIsInteractive.R’ [1s/1s] Running ‘devIsOpen.R’ [1s/1s] Running ‘devList.R’ [1s/1s] Running ‘devListIndexOf.R’ [1s/1s] Running ‘devNew.R’ [1s/1s] Running ‘devOptions.R’ [2s/2s] Running ‘devSet.R’ [1s/1s] Running ‘devTypeName.R’ [1s/1s] Running ‘favicon.R’ [1s/1s] Running ‘toNNN.R’ [1s/2s] Running ‘withPar.R’ [1s/1s] Running the tests in ‘tests/DevEvalProduct.R’ failed. Complete output: > view <- R.devices:::view > > message("*** DevEvalProduct ...") *** DevEvalProduct ... > > message("*** DevEvalProduct - subsetting ...") *** DevEvalProduct - subsetting ... > > p <- R.devices:::DevEvalProduct("foo", tags=c("a", "b")) > for (ff in c("fullname", "name", "tags")) { + cat(sprintf("%s: %s\n", ff, substring(p[[ff]], 1, 50))) + } fullname: foo,a,b name: foo tags: a,b > > library("R.devices") R.devices v2.17.3 (2025-12-18 06:11:04 UTC) successfully loaded. See ?R.devices for help. > > p <- DevEvalProduct("foo", tags=c("a", "b")) > for (ff in c("fullname", "name", "tags")) { + cat(sprintf("%s: %s\n", ff, substring(p[[ff]], 1, 50))) + } fullname: foo,a,b name: foo tags: a,b > > p <- DevEvalProduct("foo", tags=c("a", "b")) > valueA <- p[["name"]] > valueB <- p$name > stopifnot(identical(valueB, valueA)) > value <- p[["non-existing-field"]] > stopifnot(is.null(value)) Error: is.null(value) is not TRUE Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 2.17.3
Check: tests
Result: ERROR Running ‘DevEvalFileProduct.R’ [1s/1s] Running ‘DevEvalProduct.R’ [0s/0s] Running ‘capabilitiesX11.R’ [1s/1s] Running ‘capturePlot.R’ [1s/1s] Running ‘dataURI.R’ [0s/1s] Running ‘devAll.R’ [0s/1s] Running ‘devDump.R’ [0s/0s] Running ‘devEqualTypes.R’ [0s/1s] Running ‘devEval,error.R’ [1s/1s] Running ‘devEval.R’ [2s/3s] Running ‘devIsInteractive.R’ [0s/1s] Running ‘devIsOpen.R’ [0s/1s] Running ‘devList.R’ [0s/1s] Running ‘devListIndexOf.R’ [0s/1s] Running ‘devNew.R’ [1s/1s] Running ‘devOptions.R’ [1s/1s] Running ‘devSet.R’ [1s/1s] Running ‘devTypeName.R’ [0s/1s] Running ‘favicon.R’ [0s/1s] Running ‘toNNN.R’ [1s/1s] Running ‘withPar.R’ [0s/1s] Running the tests in ‘tests/DevEvalProduct.R’ failed. Complete output: > view <- R.devices:::view > > message("*** DevEvalProduct ...") *** DevEvalProduct ... > > message("*** DevEvalProduct - subsetting ...") *** DevEvalProduct - subsetting ... > > p <- R.devices:::DevEvalProduct("foo", tags=c("a", "b")) > for (ff in c("fullname", "name", "tags")) { + cat(sprintf("%s: %s\n", ff, substring(p[[ff]], 1, 50))) + } fullname: foo,a,b name: foo tags: a,b > > library("R.devices") R.devices v2.17.3 (2025-12-18 06:11:04 UTC) successfully loaded. See ?R.devices for help. > > p <- DevEvalProduct("foo", tags=c("a", "b")) > for (ff in c("fullname", "name", "tags")) { + cat(sprintf("%s: %s\n", ff, substring(p[[ff]], 1, 50))) + } fullname: foo,a,b name: foo tags: a,b > > p <- DevEvalProduct("foo", tags=c("a", "b")) > valueA <- p[["name"]] > valueB <- p$name > stopifnot(identical(valueB, valueA)) > value <- p[["non-existing-field"]] > stopifnot(is.null(value)) Error: is.null(value) is not TRUE Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 2.17.3
Check: tests
Result: ERROR Running ‘DevEvalFileProduct.R’ Running ‘DevEvalProduct.R’ Running ‘capabilitiesX11.R’ Running ‘capturePlot.R’ Running ‘dataURI.R’ Running ‘devAll.R’ Running ‘devDump.R’ Running ‘devEqualTypes.R’ Running ‘devEval,error.R’ Running ‘devEval.R’ Running ‘devIsInteractive.R’ Running ‘devIsOpen.R’ Running ‘devList.R’ Running ‘devListIndexOf.R’ Running ‘devNew.R’ Running ‘devOptions.R’ Running ‘devSet.R’ Running ‘devTypeName.R’ Running ‘favicon.R’ Running ‘toNNN.R’ Running ‘withPar.R’ Running the tests in ‘tests/DevEvalProduct.R’ failed. Complete output: > view <- R.devices:::view > > message("*** DevEvalProduct ...") *** DevEvalProduct ... > > message("*** DevEvalProduct - subsetting ...") *** DevEvalProduct - subsetting ... > > p <- R.devices:::DevEvalProduct("foo", tags=c("a", "b")) > for (ff in c("fullname", "name", "tags")) { + cat(sprintf("%s: %s\n", ff, substring(p[[ff]], 1, 50))) + } fullname: foo,a,b name: foo tags: a,b > > library("R.devices") R.devices v2.17.3 (2025-12-18 06:11:04 UTC) successfully loaded. See ?R.devices for help. > > p <- DevEvalProduct("foo", tags=c("a", "b")) > for (ff in c("fullname", "name", "tags")) { + cat(sprintf("%s: %s\n", ff, substring(p[[ff]], 1, 50))) + } fullname: foo,a,b name: foo tags: a,b > > p <- DevEvalProduct("foo", tags=c("a", "b")) > valueA <- p[["name"]] > valueB <- p$name > stopifnot(identical(valueB, valueA)) > value <- p[["non-existing-field"]] > stopifnot(is.null(value)) Error: is.null(value) is not TRUE Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 2.17.3
Check: tests
Result: ERROR Running 'DevEvalFileProduct.R' [1s] Running 'DevEvalProduct.R' [1s] Running 'capabilitiesX11.R' [1s] Running 'capturePlot.R' [2s] Running 'dataURI.R' [1s] Running 'devAll.R' [1s] Running 'devDump.R' [1s] Running 'devEqualTypes.R' [1s] Running 'devEval,error.R' [2s] Running 'devEval.R' [5s] Running 'devIsInteractive.R' [1s] Running 'devIsOpen.R' [1s] Running 'devList.R' [1s] Running 'devListIndexOf.R' [1s] Running 'devNew.R' [1s] Running 'devOptions.R' [2s] Running 'devSet.R' [1s] Running 'devTypeName.R' [1s] Running 'favicon.R' [1s] Running 'toNNN.R' [2s] Running 'withPar.R' [1s] Running the tests in 'tests/DevEvalProduct.R' failed. Complete output: > view <- R.devices:::view > > message("*** DevEvalProduct ...") *** DevEvalProduct ... > > message("*** DevEvalProduct - subsetting ...") *** DevEvalProduct - subsetting ... > > p <- R.devices:::DevEvalProduct("foo", tags=c("a", "b")) > for (ff in c("fullname", "name", "tags")) { + cat(sprintf("%s: %s\n", ff, substring(p[[ff]], 1, 50))) + } fullname: foo,a,b name: foo tags: a,b > > library("R.devices") R.devices v2.17.3 (2025-12-18 06:11:04 UTC) successfully loaded. See ?R.devices for help. > > p <- DevEvalProduct("foo", tags=c("a", "b")) > for (ff in c("fullname", "name", "tags")) { + cat(sprintf("%s: %s\n", ff, substring(p[[ff]], 1, 50))) + } fullname: foo,a,b name: foo tags: a,b > > p <- DevEvalProduct("foo", tags=c("a", "b")) > valueA <- p[["name"]] > valueB <- p$name > stopifnot(identical(valueB, valueA)) > value <- p[["non-existing-field"]] > stopifnot(is.null(value)) Error: is.null(value) is not TRUE Execution halted Flavor: r-devel-windows-x86_64

Package R.filesets

Current CRAN status: OK: 13

Package R.huge

Current CRAN status: OK: 13

Package R.matlab

Current CRAN status: NOTE: 13

Version: 3.7.0
Check: Rd files
Result: NOTE checkRd: (-1) setOption.Matlab.Rd:37-39: Lost braces in \itemize; meant \describe ? checkRd: (-1) setOption.Matlab.Rd:40-41: Lost braces in \itemize; meant \describe ? Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package R.methodsS3

Current CRAN status: NOTE: 2, OK: 11

Version: 1.8.2
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Henrik Bengtsson <henrikb@braju.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package R.oo

Current CRAN status: OK: 13

Package R.rsp

Current CRAN status: OK: 13

Package R.utils

Current CRAN status: OK: 13

Package seguid

Current CRAN status: OK: 13

Package startup

Current CRAN status: OK: 13

Package TopDom

Current CRAN status: NOTE: 13

Version: 0.10.1
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Henrik Bengtsson <henrikb@braju.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.10.1
Check: Rd files
Result: NOTE checkRd: (-1) TopDom.Rd:21: Lost braces; missing escapes or markup? 21 | Recommended range is in {5, ..., 20}.} | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64