Last updated on 2026-04-01 15:54:28 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.0 | 3.35 | 451.38 | 454.73 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.2.0 | 2.86 | 331.75 | 334.61 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.3.0 | 7.00 | 642.68 | 649.68 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.3.0 | 4.00 | 661.33 | 665.33 | OK | |
| r-devel-macos-arm64 | 0.3.0 | 1.00 | 194.00 | 195.00 | OK | |
| r-devel-windows-x86_64 | 0.2.0 | 8.00 | 550.00 | 558.00 | OK | |
| r-patched-linux-x86_64 | 0.2.0 | 3.72 | 429.33 | 433.05 | OK | |
| r-release-linux-x86_64 | 0.2.0 | 3.50 | 427.34 | 430.84 | OK | |
| r-release-macos-arm64 | 0.3.0 | 1.00 | 176.00 | 177.00 | OK | |
| r-release-macos-x86_64 | 0.3.0 | 3.00 | 546.00 | 549.00 | OK | |
| r-release-windows-x86_64 | 0.2.0 | 6.00 | 538.00 | 544.00 | OK | |
| r-oldrel-macos-arm64 | 0.2.0 | 1.00 | 173.00 | 174.00 | NOTE | |
| r-oldrel-macos-x86_64 | 0.3.0 | 3.00 | 364.00 | 367.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.2.0 | 8.00 | 684.00 | 692.00 | OK |
Version: 0.2.0
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking: 'GSVA', 'scater'
Flavor: r-oldrel-macos-arm64
Version: 0.3.0
Check: tests
Result: ERROR
Running ‘test-api.R’ [20s/46s]
Running ‘test-doFuture-foreach_dofuture,errors.R’ [8s/18s]
Running ‘test-doFuture-foreach_dofuture,globals.R’ [11s/16s]
Running ‘test-doFuture-foreach_dofuture,nested_colon.R’ [7s/14s]
Running ‘test-doFuture-foreach_dofuture,nested_dofuture.R’ [7s/18s]
Running ‘test-doFuture-foreach_dofuture,rng.R’ [3s/5s]
Running ‘test-doFuture-foreach_dofuture-options,nested.R’ [4s/5s]
Running ‘test-doFuture-foreach_dofuture.R’ [2s/3s]
Running ‘test-doFuture-times.R’ [2s/3s]
Running ‘test-furrr-future_imap.R’ [1s/2s]
Running ‘test-furrr-future_map.R’ [3s/5s]
Running ‘test-furrr-future_map2.R’ [2s/2s]
Running ‘test-furrr-future_modify.R’ [2s/2s]
Running ‘test-furrr-future_pmap.R’ [3s/4s]
Running ‘test-furrr-future_walk.R’ [1s/1s]
Running ‘test-future.apply-future_Filter.R’ [1s/2s]
Running ‘test-future.apply-future_apply.R’ [5s/7s]
Running ‘test-future.apply-future_by.R’ [3s/4s]
Running ‘test-future.apply-future_eapply.R’ [2s/3s]
Running ‘test-future.apply-future_kernapply.R’ [1s/2s]
Running ‘test-future.apply-future_lapply,RNG.R’ [19s/23s]
Running ‘test-future.apply-future_lapply,globals.R’ [5s/6s]
Running ‘test-future.apply-future_lapply.R’ [12s/14s]
Running ‘test-future.apply-future_mapply,globals.R’ [3s/4s]
Running ‘test-future.apply-future_mapply.R’ [4s/5s]
Running ‘test-future.apply-future_replicate.R’ [2s/3s]
Running ‘test-future.apply-future_sapply.R’ [10s/10s]
Running ‘test-future.apply-future_tapply.R’ [1s/1s]
Running ‘test-future.apply-future_vapply.R’ [5s/6s]
Running ‘test-future.apply-globals,tricky2.R’ [2s/2s]
Running ‘test-future.apply-globals,tricky_recursive.R’ [2s/2s]
Running ‘test-future.apply-options,nested.R’ [2s/4s]
Running ‘test-future.apply-stdout.R’ [7s/14s]
Running ‘test-futurize-BiocParallel.R’ [6s/8s]
Running ‘test-futurize-DESeq2.R’ [1s/1s]
Running ‘test-futurize-GSVA.R’ [1s/1s]
Running ‘test-futurize-GenomicAlignments.R’ [1s/1s]
Running ‘test-futurize-Rsamtools.R’ [6s/9s]
Running the tests in ‘tests/test-futurize-Rsamtools.R’ failed.
Complete output:
> #! /usr/bin/env Rscript
> ## This runs testme test script inst/testme/test-futurize-Rsamtools.R
> ## Don't edit - it was autogenerated by inst/testme/deploy.R
> futurize:::testme("futurize-Rsamtools")
Test 'futurize-Rsamtools' ...
chr "none"
> if (requireNamespace("Rsamtools") && requireNamespace("doFuture")) {
+ library(futurize)
+ library(Rsamtools)
+ options(future.rng.onMis .... [TRUNCATED]
Loading required namespace: Rsamtools
Loading required namespace: doFuture
Loading required package: future
Loading required package: GenomeInfoDb
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, table, tapply,
union, unique, unsplit, which.max, which.min
Loading required package: S4Vectors
Loading required package: stats4
Attaching package: 'S4Vectors'
The following object is masked from 'package:utils':
findMatches
The following objects are masked from 'package:base':
I, expand.grid, unname
Loading required package: IRanges
Loading required package: GenomicRanges
Loading required package: Biostrings
Loading required package: XVector
Attaching package: 'Biostrings'
The following object is masked from 'package:base':
strsplit
Formal class 'SimpleList' [package "S4Vectors"] with 4 slots
..@ listData :List of 3
.. ..$ sample1.bam:'data.frame': 1 obs. of 7 variables:
.. .. ..$ space : logi NA
.. .. ..$ start : logi NA
.. .. ..$ end : logi NA
.. .. ..$ width : logi NA
.. .. ..$ file : chr "sample1.bam"
.. .. ..$ records : int 3307
.. .. ..$ nucleotides: num 116551
.. ..$ sample2.bam:'data.frame': 1 obs. of 7 variables:
.. .. ..$ space : logi NA
.. .. ..$ start : logi NA
.. .. ..$ end : logi NA
.. .. ..$ width : logi NA
.. .. ..$ file : chr "sample2.bam"
.. .. ..$ records : int 3307
.. .. ..$ nucleotides: num 116551
.. ..$ sample3.bam:'data.frame': 1 obs. of 7 variables:
.. .. ..$ space : logi NA
.. .. ..$ start : logi NA
.. .. ..$ end : logi NA
.. .. ..$ width : logi NA
.. .. ..$ file : chr "sample3.bam"
.. .. ..$ records : int 3307
.. .. ..$ nucleotides: num 116551
..@ elementType : chr "ANY"
..@ elementMetadata:Formal class 'DFrame' [package "S4Vectors"] with 6 slots
.. .. ..@ rownames : chr [1:3] "sample1.bam" "sample2.bam" "sample3.bam"
.. .. ..@ nrows : int 3
.. .. ..@ elementType : chr "ANY"
.. .. ..@ elementMetadata: NULL
.. .. ..@ metadata : list()
.. .. ..@ listData : Named list()
..@ metadata : list()
Warning: Caught FutureLaunchError. Canceling all iterations ...
Error in value[[3L]](cond) :
'DoparParam()' foreach() error occurred: Caught an unexpected error of class FutureError when trying to launch future ('doFuture2-1') on backend of class MultisessionFutureBackend. The reason was: MultisessionFuture ('doFuture2-1') failed to launch future on cluster RichSOCKnode #1 (PID 63232 on localhost 'localhost'). The reason reported was 'error writing to connection'. Post-mortem diagnostic: A process with this PID exists, which suggests that the localhost worker is still alive. Detected a non-exportable reference ('externalptr') in one of the globals ('const.value' of class 'list') used in the future expression. The total size of the 4 globals exported is 2.14 MiB The three largest globals are 'const.value' (2.12 MiB of class 'list'), '.bpworker_EXEC' (8.73 KiB of class 'function') and '.task_remake' (5.18 KiB of class 'function') [future 'doFuture2-1' (93f145be3160997fb8e0a7e3aa6f1761-1); on 93f145be3160997fb8e0a7e3aa6f1761@ipyr<63048>] [future 'doFuture2-1' (93f145be31
Calls: <Anonymous> ... source -> withVisible -> eval -> eval -> main -> testme_run_test -> source -> withVisible -> eval -> eval -> futurize -> transpile -> eval -> eval -> with -> with -> with.DoPar -> withVisible -> eval -> eval -> local -> eval.parent -> eval -> eval -> eval -> eval -> eval -> countBam -> countBam -> .BamViews_delegate -> bplapply -> bplapply -> .bpinit -> bploop -> bploop.lapply -> .bploop_impl -> .collect_result -> .manager_recv -> .manager_recv -> tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Flavor: r-oldrel-macos-x86_64