# This file created by conda-build 3.24.0
# meta.yaml template originally from:
# /opt/recipe, last modified Fri Jul 21 01:29:46 2023
# ------------------------------------------------

package:
  name: bioconductor-qdnaseq
  version: 1.36.0
source:
  md5: 9d44cd046b4d2157547009cb1fdfa442
  url:
    - https://bioarchive.galaxyproject.org/QDNAseq_1.36.0.tar.gz
    - https://bioconductor.org/packages/3.17/bioc/src/contrib/Archive/QDNAseq/QDNAseq_1.36.0.tar.gz
    - https://bioconductor.org/packages/3.17/bioc/src/contrib/QDNAseq_1.36.0.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-qdnaseq/bioconductor-qdnaseq_1.36.0_src_all.tar.gz
build:
  noarch: generic
  number: '0'
  rpaths:
    - lib/
    - lib/R/lib/
  string: r43hdfd78af_0
requirements:
  host:
    - _openmp_mutex 4.5 2_gnu
    - _r-mutex 1.0.1 anacondar_1
    - _sysroot_linux-aarch64_curr_repodata_hack 4 h57d6b7b_13
    - argcomplete 3.1.1 pyhd8ed1ab_0
    - binutils_impl_linux-aarch64 2.40 h870a726_0
    - bioconductor-biobase 2.60.0 r43h1184a65_1
    - bioconductor-biocgenerics 0.46.0 r43hdfd78af_0
    - bioconductor-biocparallel 1.34.2 r43h7d2ed04_0
    - bioconductor-biostrings 2.68.1 r43h1184a65_0
    - bioconductor-cghbase 1.60.0 r43hdfd78af_0
    - bioconductor-cghcall 2.62.0 r43hdfd78af_0
    - bioconductor-data-packages 20230718 hdfd78af_1
    - bioconductor-dnacopy 1.74.1 r43hc87ebe4_0
    - bioconductor-genomeinfodb 1.36.1 r43hdfd78af_0
    - bioconductor-genomeinfodbdata 1.2.10 r43hdfd78af_0
    - bioconductor-genomicranges 1.52.0 r43h1184a65_0
    - bioconductor-impute 1.74.1 r43hc87ebe4_0
    - bioconductor-iranges 2.34.1 r43h1184a65_1
    - bioconductor-limma 3.56.2 r43h1184a65_0
    - bioconductor-marray 1.78.0 r43hdfd78af_0
    - bioconductor-rhtslib 2.2.0 r43h1184a65_1
    - bioconductor-rsamtools 2.16.0 r43h7d2ed04_0
    - bioconductor-s4vectors 0.38.1 r43h1184a65_1
    - bioconductor-xvector 0.40.0 r43h1184a65_1
    - bioconductor-zlibbioc 1.46.0 r43h1184a65_1
    - bwidget 1.9.14 h8af1aa0_1
    - bzip2 1.0.8 hf897c2e_4
    - c-ares 1.19.1 h31becfc_0
    - ca-certificates 2023.7.22 hcefe29a_0
    - cairo 1.16.0 h3b99fb1_1016
    - curl 8.2.1 h4e8248e_0
    - expat 2.5.0 hd600fc2_1
    - font-ttf-dejavu-sans-mono 2.37 hab24e00_0
    - font-ttf-inconsolata 3.000 h77eed37_0
    - font-ttf-source-code-pro 2.038 h77eed37_0
    - font-ttf-ubuntu 0.83 hab24e00_0
    - fontconfig 2.14.2 ha9a116f_0
    - fonts-conda-ecosystem 1 0
    - fonts-conda-forge 1 0
    - freetype 2.12.1 hbbbf32d_1
    - fribidi 1.0.10 hb9de7d4_0
    - gcc_impl_linux-aarch64 13.1.0 h07080d6_0
    - gettext 0.21.1 ha18d298_0
    - gfortran_impl_linux-aarch64 13.1.0 h8a08e1f_0
    - graphite2 1.3.13 h7fd3ca4_1001
    - gsl 2.7 h294027d_0
    - gxx_impl_linux-aarch64 13.1.0 h07080d6_0
    - harfbuzz 7.3.0 h8428050_0
    - icu 72.1 hcf00150_0
    - jq 1.6 hb9de7d4_1000
    - kernel-headers_linux-aarch64 4.18.0 h5b4a56d_13
    - keyutils 1.6.1 h4e544f5_0
    - krb5 1.21.1 hc419048_0
    - ld_impl_linux-aarch64 2.40 h2d8c526_0
    - lerc 4.0.0 h4de3ea5_0
    - libblas 3.9.0 17_linuxaarch64_openblas
    - libcblas 3.9.0 17_linuxaarch64_openblas
    - libcurl 8.2.1 h4e8248e_0
    - libdeflate 1.18 hb4cce97_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 h516909a_1
    - libexpat 2.5.0 hd600fc2_1
    - libffi 3.4.2 h3557bc0_5
    - libgcc-devel_linux-aarch64 13.1.0 hb5b3640_0
    - libgcc-ng 13.1.0 h2b4548d_0
    - libgfortran-ng 13.1.0 he9431aa_0
    - libgfortran5 13.1.0 h24e4805_0
    - libglib 2.76.4 h0464669_0
    - libgomp 13.1.0 h2b4548d_0
    - libiconv 1.17 h9cdd2b7_0
    - libjpeg-turbo 2.1.5.1 hb4cce97_0
    - liblapack 3.9.0 17_linuxaarch64_openblas
    - libnghttp2 1.52.0 h250e5c5_0
    - libnsl 2.0.0 hf897c2e_0
    - libopenblas 0.3.23 pthreads_hd703e6f_0
    - libpng 1.6.39 hf9034f9_0
    - libsanitizer 13.1.0 h452befe_0
    - libsqlite 3.42.0 h194ca79_0
    - libssh2 1.11.0 h492db2e_0
    - libstdcxx-devel_linux-aarch64 13.1.0 hb5b3640_0
    - libstdcxx-ng 13.1.0 h452befe_0
    - libtiff 4.5.1 h360e80f_0
    - libuuid 2.38.1 hb4cce97_0
    - libwebp-base 1.3.1 h31becfc_0
    - libxcb 1.15 h2a766a3_0
    - libxml2 2.11.5 h164fba4_0
    - libzlib 1.2.13 h31becfc_5
    - make 4.3 h309ac5b_1
    - ncurses 6.4 h2e1726e_0
    - oniguruma 6.9.8 h4e544f5_0
    - openssl 3.1.2 h31becfc_0
    - pango 1.50.14 hb4276a1_1
    - pcre2 10.40 he7b27c6_0
    - pip 23.2.1 pyhd8ed1ab_0
    - pixman 0.40.0 hb9de7d4_0
    - pthread-stubs 0.4 hb9de7d4_1001
    - python 3.11.4 h43d1f9e_0_cpython
    - python_abi 3.11 3_cp311
    - pyyaml 6.0 py311hdfa8b44_5
    - r-base 4.3.1 h7539d2d_3
    - r-bh 1.81.0_1 r43hc72bb7e_1
    - r-bitops 1.0_7 r43h25e906a_2
    - r-codetools 0.2_19 r43hc72bb7e_1
    - r-cpp11 0.4.6 r43hc72bb7e_0
    - r-crayon 1.5.2 r43hc72bb7e_2
    - r-digest 0.6.33 r43h93f32a7_0
    - r-formatr 1.14 r43hc72bb7e_1
    - r-futile.logger 1.4.3 r43hc72bb7e_1005
    - r-futile.options 1.0.1 r43hc72bb7e_1004
    - r-future 1.33.0 r43hc72bb7e_0
    - r-future.apply 1.11.0 r43hc72bb7e_1
    - r-globals 0.16.2 r43hc72bb7e_1
    - r-lambda.r 1.2.4 r43hc72bb7e_3
    - r-listenv 0.9.0 r43hc72bb7e_1
    - r-matrixstats 1.0.0 r43h25e906a_1
    - r-parallelly 1.36.0 r43hc72bb7e_1
    - r-r.methodss3 1.8.2 r43hc72bb7e_2
    - r-r.oo 1.25.0 r43hc72bb7e_2
    - r-r.utils 2.12.2 r43hc72bb7e_1
    - r-rcurl 1.98_1.12 r43h1ea2296_2
    - r-snow 0.4_4 r43hc72bb7e_2
    - r-snowfall 1.84_6.2 r43hc72bb7e_2
    - readline 8.2 h8fc344f_1
    - sed 4.8 ha0d5d3d_0
    - setuptools 68.0.0 pyhd8ed1ab_0
    - sysroot_linux-aarch64 2.17 h5b4a56d_13
    - tk 8.6.12 hd8af866_0
    - tktable 2.10 hcd05d48_3
    - toml 0.10.2 pyhd8ed1ab_0
    - tomlkit 0.12.1 pyha770c72_0
    - tzdata 2023c h71feb2d_0
    - wheel 0.41.1 pyhd8ed1ab_0
    - xmltodict 0.13.0 pyhd8ed1ab_0
    - xorg-kbproto 1.0.7 h3557bc0_1002
    - xorg-libice 1.1.1 h7935292_0
    - xorg-libsm 1.2.4 h5a01bc2_0
    - xorg-libx11 1.8.6 h055a233_0
    - xorg-libxau 1.0.11 h31becfc_0
    - xorg-libxdmcp 1.1.3 h3557bc0_0
    - xorg-libxext 1.3.4 h2a766a3_2
    - xorg-libxrender 0.9.11 h7935292_0
    - xorg-libxt 1.3.0 h7935292_1
    - xorg-renderproto 0.11.1 h3557bc0_1002
    - xorg-xextproto 7.3.0 h2a766a3_1003
    - xorg-xproto 7.0.31 h3557bc0_1007
    - xz 5.2.6 h9cdd2b7_0
    - yaml 0.2.5 hf897c2e_2
    - yq 3.2.2 pyhd8ed1ab_0
    - zlib 1.2.13 h31becfc_5
    - zstd 1.5.2 h4c53e97_7
  run:
    - bioconductor-biobase >=2.60.0,<2.61.0
    - bioconductor-cghbase >=1.60.0,<1.61.0
    - bioconductor-cghcall >=2.62.0,<2.63.0
    - bioconductor-dnacopy >=1.74.0,<1.75.0
    - bioconductor-genomicranges >=1.52.0,<1.53.0
    - bioconductor-iranges >=2.34.0,<2.35.0
    - bioconductor-rsamtools >=2.16.0,<2.17.0
    - r-base >=4.3,<4.4.0a0
    - r-future.apply >=1.8.1
    - r-matrixstats >=0.60.0
    - r-r.utils >=2.9.0
test:
  commands:
    - $R -e "library('QDNAseq')"
about:
  description: Quantitative DNA sequencing for chromosomal aberrations. The genome
    is divided into non-overlapping fixed-sized bins, number of sequence reads in
    each counted, adjusted with a simultaneous two-dimensional loess correction for
    sequence mappability and GC content, and filtered to remove spurious regions in
    the genome. Downstream steps of segmentation and calling are also implemented
    via packages DNAcopy and CGHcall, respectively.
  home: https://bioconductor.org/packages/3.17/bioc/html/QDNAseq.html
  license: GPL
  license_file: /opt/conda/conda-bld/bioconductor-qdnaseq_1691962718618/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl/lib/R/share/licenses/GPL-3
  summary: Quantitative DNA Sequencing for Chromosomal Aberrations
extra:
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:qdnaseq
