geNetClassifier-package	geNetClassifier-package
calculateGenesRanking	calculateGenesRanking
edges,GenesNetwork-method	getEdges-methods
externalValidation.probMatrix	externalValidation.probMatrix
externalValidation.stats	externalValidation.stats
extractGenes,GenesRanking-method	GenesRanking-class
gClasses	gClasses-methods
gClasses,GenesRanking-method	gClasses-methods
gClasses-methods	gClasses-methods
GeneralizationError	GeneralizationError-class
GeneralizationError-class	GeneralizationError-class
genesDetails	genesDetails-methods
genesDetails,GenesRanking-method	genesDetails-methods
genesDetails-methods	genesDetails-methods
genesDetails.GenesRanking	genesDetails-methods
GenesNetwork	GenesNetwork-class
GenesNetwork-class	GenesNetwork-class
GenesRanking	GenesRanking-class
GenesRanking-class	GenesRanking-class
geneSymbols	geneSymbols
geNetClassifier	geNetClassifier
GeNetClassifierReturn	GeNetClassifierReturn-class
GeNetClassifierReturn-class	GeNetClassifierReturn-class
getEdges	getEdges-methods
getEdges,GenesNetwork-method	getEdges-methods
getEdges-methods	getEdges-methods
getNodes	getNodes-methods
getNodes,GenesNetwork-method	getNodes-methods
getNodes-methods	getNodes-methods
getNumEdges	getNumEdges-methods
getNumEdges,GenesNetwork-method	getNumEdges-methods
getNumEdges-methods	getNumEdges-methods
getNumNodes	getNumNodes-methods
getNumNodes,GenesNetwork-method	getNumNodes-methods
getNumNodes-methods	getNumNodes-methods
getRanking	getRanking-methods
getRanking,GenesRanking-method	getRanking-methods
getRanking-methods	getRanking-methods
getRanking.GenesRanking	getRanking-methods
getSlots,GeNetClassifierReturn-method	GeNetClassifierReturn-class
getSubNetwork	getSubNetwork-methods
getSubNetwork,GenesNetwork-method	getSubNetwork-methods
getSubNetwork,GeNetClassifierReturn-method	getSubNetwork-methods
getSubNetwork,list-method	getSubNetwork-methods
getSubNetwork,NULL-method	getSubNetwork-methods
getSubNetwork-methods	getSubNetwork-methods
getTopRanking	getTopRanking-methods
getTopRanking,GenesRanking-method	getTopRanking-methods
getTopRanking-methods	getTopRanking-methods
getTopRanking.GenesRanking	getTopRanking-methods
initialize,GeneralizationError-method	GeneralizationError-class
initialize,GenesNetwork-method	GenesNetwork-class
initialize,GenesRanking-method	GenesRanking-class
initialize,GeNetClassifierReturn-method	GeNetClassifierReturn-class
leukemiasClassifier	leukemiasClassifier
names,GeNetClassifierReturn-method	GeNetClassifierReturn-class
network2txt	network2txt
network2txt,GenesNetwork-method	network2txt
network2txt,list-method	network2txt
network2txt-methods	network2txt
nodes,GenesNetwork-method	getNodes-methods
numEdges,GenesNetwork-method	getNumEdges-methods
numGenes	numGenes-methods
numGenes,GenesRanking-method	numGenes-methods
numGenes-methods	numGenes-methods
numNodes,GenesNetwork-method	getNumNodes-methods
numSignificantGenes	numSignificantGenes-methods
numSignificantGenes,GenesRanking-method	numSignificantGenes-methods
numSignificantGenes-methods	numSignificantGenes-methods
numSignificantGenes.GenesRanking	numSignificantGenes-methods
overview	overview-methods
overview,GeneralizationError-method	overview-methods
overview,GenesNetwork-method	overview-methods
overview,GenesRanking-method	overview-methods
overview,GeNetClassifierReturn-method	overview-methods
overview-methods	overview-methods
plot,GenesNetwork-method	plotNetwork
plot,GenesRanking-method	plot.GenesRanking
plot,GeNetClassifierReturn-method	plot.GeNetClassifierReturn
plot.GenesNetwork	plotNetwork
plot.GenesRanking	plot.GenesRanking
plot.GeNetClassifierReturn	plot.GeNetClassifierReturn
plotAssignments	plotAssignments
plotDiscriminantPower	plotDiscriminantPower
plotExpressionProfiles	plotExpressionProfiles
plotGenesRanking	plot.GenesRanking
plotGeNetClassifierReturn	plot.GeNetClassifierReturn
plotGeNetClassifierReturn,GeNetClassifierReturn-method	plot.GeNetClassifierReturn
plotNetwork	plotNetwork
plotNetwork,GenesNetwork-method	plotNetwork
queryGeNetClassifier	queryGeNetClassifier
querySummary	querySummary
setProperties	setProperties-methods
setProperties,GenesRanking-method	setProperties-methods
setProperties-methods	setProperties-methods
setProperties.GenesRanking	setProperties-methods
show,GeneralizationError-method	GeneralizationError-class
show,GenesNetwork-method	GenesNetwork-class
show,GenesRanking-method	GenesRanking-class
show,GeNetClassifierReturn-method	GeNetClassifierReturn-class
