# This file created by conda-build 3.24.0
# meta.yaml template originally from:
# /opt/recipe, last modified Fri Jul 21 01:29:46 2023
# ------------------------------------------------

package:
  name: bioconductor-ensembldb
  version: 2.24.0
source:
  md5: 4d1be7f0e9d2ff9e4c473b891eec62de
  url:
    - https://bioarchive.galaxyproject.org/ensembldb_2.24.0.tar.gz
    - https://bioconductor.org/packages/3.17/bioc/src/contrib/Archive/ensembldb/ensembldb_2.24.0.tar.gz
    - https://bioconductor.org/packages/3.17/bioc/src/contrib/ensembldb_2.24.0.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-ensembldb/bioconductor-ensembldb_2.24.0_src_all.tar.gz
build:
  noarch: generic
  number: '0'
  rpaths:
    - lib/
    - lib/R/lib/
  string: r43hdfd78af_0
requirements:
  host:
    - _openmp_mutex 4.5 2_gnu
    - _r-mutex 1.0.1 anacondar_1
    - _sysroot_linux-aarch64_curr_repodata_hack 4 h57d6b7b_13
    - argcomplete 3.1.1 pyhd8ed1ab_0
    - binutils_impl_linux-aarch64 2.40 h870a726_0
    - bioconductor-annotationdbi 1.62.2 r43hdfd78af_0
    - bioconductor-annotationfilter 1.24.0 r43hdfd78af_0
    - bioconductor-biobase 2.60.0 r43h1184a65_1
    - bioconductor-biocfilecache 2.8.0 r43hdfd78af_0
    - bioconductor-biocgenerics 0.46.0 r43hdfd78af_0
    - bioconductor-biocio 1.10.0 r43hdfd78af_0
    - bioconductor-biocparallel 1.34.2 r43h7d2ed04_0
    - bioconductor-biomart 2.56.1 r43hdfd78af_0
    - bioconductor-biostrings 2.68.1 r43h1184a65_0
    - bioconductor-data-packages 20230718 hdfd78af_1
    - bioconductor-delayedarray 0.26.6 r43h1184a65_0
    - bioconductor-genomeinfodb 1.36.1 r43hdfd78af_0
    - bioconductor-genomeinfodbdata 1.2.10 r43hdfd78af_0
    - bioconductor-genomicalignments 1.36.0 r43h1184a65_0
    - bioconductor-genomicfeatures 1.52.1 r43hdfd78af_0
    - bioconductor-genomicranges 1.52.0 r43h1184a65_0
    - bioconductor-iranges 2.34.1 r43h1184a65_1
    - bioconductor-keggrest 1.40.0 r43hdfd78af_0
    - bioconductor-matrixgenerics 1.12.2 r43hdfd78af_0
    - bioconductor-protgenerics 1.32.0 r43hdfd78af_0
    - bioconductor-rhtslib 2.2.0 r43h1184a65_1
    - bioconductor-rsamtools 2.16.0 r43h7d2ed04_0
    - bioconductor-rtracklayer 1.60.0 r43h1184a65_0
    - bioconductor-s4arrays 1.0.4 r43h1184a65_0
    - bioconductor-s4vectors 0.38.1 r43h1184a65_1
    - bioconductor-summarizedexperiment 1.30.2 r43hdfd78af_0
    - bioconductor-xvector 0.40.0 r43h1184a65_1
    - bioconductor-zlibbioc 1.46.0 r43h1184a65_1
    - bwidget 1.9.14 h8af1aa0_1
    - bzip2 1.0.8 hf897c2e_4
    - c-ares 1.19.1 h31becfc_0
    - ca-certificates 2023.7.22 hcefe29a_0
    - cairo 1.16.0 h3b99fb1_1016
    - curl 8.2.1 h4e8248e_0
    - expat 2.5.0 hd600fc2_1
    - font-ttf-dejavu-sans-mono 2.37 hab24e00_0
    - font-ttf-inconsolata 3.000 h77eed37_0
    - font-ttf-source-code-pro 2.038 h77eed37_0
    - font-ttf-ubuntu 0.83 hab24e00_0
    - fontconfig 2.14.2 ha9a116f_0
    - fonts-conda-ecosystem 1 0
    - fonts-conda-forge 1 0
    - freetype 2.12.1 hbbbf32d_1
    - fribidi 1.0.10 hb9de7d4_0
    - gcc_impl_linux-aarch64 13.1.0 h07080d6_0
    - gettext 0.21.1 ha18d298_0
    - gfortran_impl_linux-aarch64 13.1.0 h8a08e1f_0
    - graphite2 1.3.13 h7fd3ca4_1001
    - gsl 2.7 h294027d_0
    - gxx_impl_linux-aarch64 13.1.0 h07080d6_0
    - harfbuzz 7.3.0 h8428050_0
    - icu 72.1 hcf00150_0
    - jq 1.6 hb9de7d4_1000
    - kernel-headers_linux-aarch64 4.18.0 h5b4a56d_13
    - keyutils 1.6.1 h4e544f5_0
    - krb5 1.21.2 hc419048_0
    - ld_impl_linux-aarch64 2.40 h2d8c526_0
    - lerc 4.0.0 h4de3ea5_0
    - libblas 3.9.0 17_linuxaarch64_openblas
    - libcblas 3.9.0 17_linuxaarch64_openblas
    - libcurl 8.2.1 h4e8248e_0
    - libdeflate 1.18 hb4cce97_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 h516909a_1
    - libexpat 2.5.0 hd600fc2_1
    - libffi 3.4.2 h3557bc0_5
    - libgcc-devel_linux-aarch64 13.1.0 hb5b3640_0
    - libgcc-ng 13.1.0 h2b4548d_0
    - libgfortran-ng 13.1.0 he9431aa_0
    - libgfortran5 13.1.0 h24e4805_0
    - libglib 2.76.4 h0464669_0
    - libgomp 13.1.0 h2b4548d_0
    - libiconv 1.17 h9cdd2b7_0
    - libjpeg-turbo 2.1.5.1 hb4cce97_0
    - liblapack 3.9.0 17_linuxaarch64_openblas
    - libnghttp2 1.52.0 h250e5c5_0
    - libnsl 2.0.0 hf897c2e_0
    - libopenblas 0.3.23 pthreads_hd703e6f_0
    - libpng 1.6.39 hf9034f9_0
    - libsanitizer 13.1.0 h452befe_0
    - libsqlite 3.42.0 h194ca79_0
    - libssh2 1.11.0 h492db2e_0
    - libstdcxx-devel_linux-aarch64 13.1.0 hb5b3640_0
    - libstdcxx-ng 13.1.0 h452befe_0
    - libtiff 4.5.1 h360e80f_0
    - libuuid 2.38.1 hb4cce97_0
    - libwebp-base 1.3.1 h31becfc_0
    - libxcb 1.15 h2a766a3_0
    - libxml2 2.11.5 h164fba4_0
    - libzlib 1.2.13 h31becfc_5
    - make 4.3 h309ac5b_1
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    - pango 1.50.14 hb4276a1_1
    - pcre2 10.40 he7b27c6_0
    - pip 23.2.1 pyhd8ed1ab_0
    - pixman 0.40.0 hb9de7d4_0
    - pthread-stubs 0.4 hb9de7d4_1001
    - python 3.11.4 h43d1f9e_0_cpython
    - python_abi 3.11 3_cp311
    - pyyaml 6.0 py311hdfa8b44_5
    - r-askpass 1.1 r43h25e906a_4
    - r-assertthat 0.2.1 r43hc72bb7e_4
    - r-base 4.3.1 h7539d2d_3
    - r-bh 1.81.0_1 r43hc72bb7e_1
    - r-bit 4.0.5 r43h25e906a_1
    - r-bit64 4.0.5 r43h25e906a_2
    - r-bitops 1.0_7 r43h25e906a_2
    - r-blob 1.2.4 r43hc72bb7e_1
    - r-cachem 1.0.8 r43h25e906a_1
    - r-cli 3.6.1 r43h93f32a7_1
    - r-codetools 0.2_19 r43hc72bb7e_1
    - r-cpp11 0.4.6 r43hc72bb7e_0
    - r-crayon 1.5.2 r43hc72bb7e_2
    - r-curl 5.0.2 r43h8aed89a_0
    - r-dbi 1.1.3 r43hc72bb7e_2
    - r-dbplyr 2.3.3 r43hc72bb7e_0
    - r-digest 0.6.33 r43h93f32a7_0
    - r-dplyr 1.1.2 r43h93f32a7_1
    - r-ellipsis 0.3.2 r43h25e906a_2
    - r-fansi 1.0.4 r43h25e906a_1
    - r-fastmap 1.1.1 r43h93f32a7_1
    - r-filelock 1.0.2 r43h9d23599_1004
    - r-formatr 1.14 r43hc72bb7e_1
    - r-futile.logger 1.4.3 r43hc72bb7e_1005
    - r-futile.options 1.0.1 r43hc72bb7e_1004
    - r-generics 0.1.3 r43hc72bb7e_2
    - r-glue 1.6.2 r43h25e906a_2
    - r-hms 1.1.3 r43hc72bb7e_1
    - r-httr 1.4.7 r43hc72bb7e_0
    - r-jsonlite 1.8.7 r43h25e906a_0
    - r-lambda.r 1.2.4 r43hc72bb7e_3
    - r-lattice 0.21_8 r43h25e906a_1
    - r-lazyeval 0.2.2 r43h25e906a_4
    - r-lifecycle 1.0.3 r43hc72bb7e_2
    - r-magrittr 2.0.3 r43h25e906a_2
    - r-matrix 1.6_1 r43hd98ab41_0
    - r-matrixstats 1.0.0 r43h25e906a_1
    - r-memoise 2.0.1 r43hc72bb7e_2
    - r-mime 0.12 r43h25e906a_2
    - r-openssl 2.0.6 r43h2a8de3c_1
    - r-pillar 1.9.0 r43hc72bb7e_1
    - r-pkgconfig 2.0.3 r43hc72bb7e_3
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    - r-png 0.1_8 r43hef9d8e0_1
    - r-prettyunits 1.1.1 r43hc72bb7e_3
    - r-progress 1.2.2 r43hc72bb7e_4
    - r-purrr 1.0.2 r43h25e906a_0
    - r-r6 2.5.1 r43hc72bb7e_2
    - r-rappdirs 0.3.3 r43h25e906a_2
    - r-rcpp 1.0.11 r43h93f32a7_0
    - r-rcurl 1.98_1.12 r43h1ea2296_3
    - r-restfulr 0.0.15 r43ha2a8533_3
    - r-rjson 0.2.21 r43ha6e910b_3
    - r-rlang 1.1.1 r43h93f32a7_1
    - r-rsqlite 2.3.1 r43h93f32a7_1
    - r-snow 0.4_4 r43hc72bb7e_2
    - r-stringi 1.7.12 r43heb6e581_2
    - r-stringr 1.5.0 r43h785f33e_1
    - r-sys 3.4.2 r43h25e906a_1
    - r-tibble 3.2.1 r43h25e906a_2
    - r-tidyr 1.3.0 r43h93f32a7_1
    - r-tidyselect 1.2.0 r43h4571c7f_1
    - r-utf8 1.2.3 r43h25e906a_1
    - r-vctrs 0.6.3 r43h93f32a7_0
    - r-withr 2.5.0 r43hc72bb7e_2
    - r-xml 3.99_0.14 r43h459d2fe_2
    - r-xml2 1.3.5 r43h9ff23c6_0
    - r-yaml 2.3.7 r43h25e906a_1
    - readline 8.2 h8fc344f_1
    - sed 4.8 ha0d5d3d_0
    - setuptools 68.1.2 pyhd8ed1ab_0
    - sysroot_linux-aarch64 2.17 h5b4a56d_13
    - tk 8.6.12 hd8af866_0
    - tktable 2.10 hcd05d48_3
    - toml 0.10.2 pyhd8ed1ab_0
    - tomlkit 0.12.1 pyha770c72_0
    - tzdata 2023c h71feb2d_0
    - wheel 0.41.1 pyhd8ed1ab_0
    - xmltodict 0.13.0 pyhd8ed1ab_0
    - xorg-kbproto 1.0.7 h3557bc0_1002
    - xorg-libice 1.1.1 h7935292_0
    - xorg-libsm 1.2.4 h5a01bc2_0
    - xorg-libx11 1.8.6 h055a233_0
    - xorg-libxau 1.0.11 h31becfc_0
    - xorg-libxdmcp 1.1.3 h3557bc0_0
    - xorg-libxext 1.3.4 h2a766a3_2
    - xorg-libxrender 0.9.11 h7935292_0
    - xorg-libxt 1.3.0 h7935292_1
    - xorg-renderproto 0.11.1 h3557bc0_1002
    - xorg-xextproto 7.3.0 h2a766a3_1003
    - xorg-xproto 7.0.31 h3557bc0_1007
    - xz 5.2.6 h9cdd2b7_0
    - yaml 0.2.5 hf897c2e_2
    - yq 3.2.2 pyhd8ed1ab_0
    - zlib 1.2.13 h31becfc_5
    - zstd 1.5.2 h4c53e97_7
  run:
    - bioconductor-annotationdbi >=1.62.0,<1.63.0
    - bioconductor-annotationfilter >=1.24.0,<1.25.0
    - bioconductor-biobase >=2.60.0,<2.61.0
    - bioconductor-biocgenerics >=0.46.0,<0.47.0
    - bioconductor-biostrings >=2.68.0,<2.69.0
    - bioconductor-genomeinfodb >=1.36.0,<1.37.0
    - bioconductor-genomicfeatures >=1.52.0,<1.53.0
    - bioconductor-genomicranges >=1.52.0,<1.53.0
    - bioconductor-iranges >=2.34.0,<2.35.0
    - bioconductor-protgenerics >=1.32.0,<1.33.0
    - bioconductor-rsamtools >=2.16.0,<2.17.0
    - bioconductor-rtracklayer >=1.60.0,<1.61.0
    - bioconductor-s4vectors >=0.38.0,<0.39.0
    - r-base >=4.3,<4.4.0a0
    - r-curl
    - r-dbi
    - r-rsqlite >=1.1
test:
  commands:
    - $R -e "library('ensembldb')"
about:
  description: The package provides functions to create and use transcript centric
    annotation databases/packages. The annotation for the databases are directly fetched
    from Ensembl using their Perl API. The functionality and data is similar to that
    of the TxDb packages from the GenomicFeatures package, but, in addition to retrieve
    all gene/transcript models and annotations from the database, ensembldb provides
    a filter framework allowing to retrieve annotations for specific entries like
    genes encoded on a chromosome region or transcript models of lincRNA genes. EnsDb
    databases built with ensembldb contain also protein annotations and mappings between
    proteins and their encoding transcripts. Finally, ensembldb provides functions
    to map between genomic, transcript and protein coordinates.
  home: https://bioconductor.org/packages/3.17/bioc/html/ensembldb.html
  license: LGPL
  license_file: /opt/conda/conda-bld/bioconductor-ensembldb_1692681618728/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_/lib/R/share/licenses/LGPL-3
  summary: Utilities to create and use Ensembl-based annotation databases
extra:
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:ensembldb
    - doi:10.1038/nmeth.3252
