# This file created by conda-build 3.24.0
# meta.yaml template originally from:
# /opt/recipe, last modified Fri Jul 21 01:29:46 2023
# ------------------------------------------------

package:
  name: bioconductor-deqms
  version: 1.18.0
source:
  md5: 58542439f1c16afe6974fd4ee95852c4
  url:
    - https://bioarchive.galaxyproject.org/DEqMS_1.18.0.tar.gz
    - https://bioconductor.org/packages/3.17/bioc/src/contrib/Archive/DEqMS/DEqMS_1.18.0.tar.gz
    - https://bioconductor.org/packages/3.17/bioc/src/contrib/DEqMS_1.18.0.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-deqms/bioconductor-deqms_1.18.0_src_all.tar.gz
build:
  noarch: generic
  number: '0'
  rpaths:
    - lib/
    - lib/R/lib/
  string: r43hdfd78af_0
requirements:
  host:
    - _openmp_mutex 4.5 2_gnu
    - _r-mutex 1.0.1 anacondar_1
    - _sysroot_linux-aarch64_curr_repodata_hack 4 h57d6b7b_13
    - binutils_impl_linux-aarch64 2.40 h870a726_0
    - bioconductor-limma 3.56.2 r43h1184a65_0
    - bwidget 1.9.14 h8af1aa0_1
    - bzip2 1.0.8 hf897c2e_4
    - c-ares 1.19.1 h31becfc_0
    - ca-certificates 2023.7.22 hcefe29a_0
    - cairo 1.16.0 h3b99fb1_1016
    - curl 8.2.1 h4e8248e_0
    - expat 2.5.0 hd600fc2_1
    - font-ttf-dejavu-sans-mono 2.37 hab24e00_0
    - font-ttf-inconsolata 3.000 h77eed37_0
    - font-ttf-source-code-pro 2.038 h77eed37_0
    - font-ttf-ubuntu 0.83 hab24e00_0
    - fontconfig 2.14.2 ha9a116f_0
    - fonts-conda-ecosystem 1 0
    - fonts-conda-forge 1 0
    - freetype 2.12.1 hbbbf32d_1
    - fribidi 1.0.10 hb9de7d4_0
    - gcc_impl_linux-aarch64 13.1.0 h07080d6_0
    - gettext 0.21.1 ha18d298_0
    - gfortran_impl_linux-aarch64 13.1.0 h8a08e1f_0
    - graphite2 1.3.13 h7fd3ca4_1001
    - gsl 2.7 h294027d_0
    - gxx_impl_linux-aarch64 13.1.0 h07080d6_0
    - harfbuzz 7.3.0 h8428050_0
    - icu 72.1 hcf00150_0
    - kernel-headers_linux-aarch64 4.18.0 h5b4a56d_13
    - keyutils 1.6.1 h4e544f5_0
    - krb5 1.21.1 hc419048_0
    - ld_impl_linux-aarch64 2.40 h2d8c526_0
    - lerc 4.0.0 h4de3ea5_0
    - libblas 3.9.0 17_linuxaarch64_openblas
    - libcblas 3.9.0 17_linuxaarch64_openblas
    - libcurl 8.2.1 h4e8248e_0
    - libdeflate 1.18 hb4cce97_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 h516909a_1
    - libexpat 2.5.0 hd600fc2_1
    - libffi 3.4.2 h3557bc0_5
    - libgcc-devel_linux-aarch64 13.1.0 hb5b3640_0
    - libgcc-ng 13.1.0 h2b4548d_0
    - libgfortran-ng 13.1.0 he9431aa_0
    - libgfortran5 13.1.0 h24e4805_0
    - libglib 2.76.4 h0464669_0
    - libgomp 13.1.0 h2b4548d_0
    - libiconv 1.17 h9cdd2b7_0
    - libjpeg-turbo 2.1.5.1 hb4cce97_0
    - liblapack 3.9.0 17_linuxaarch64_openblas
    - libnghttp2 1.52.0 h250e5c5_0
    - libopenblas 0.3.23 pthreads_hd703e6f_0
    - libpng 1.6.39 hf9034f9_0
    - libsanitizer 13.1.0 h452befe_0
    - libssh2 1.11.0 h492db2e_0
    - libstdcxx-devel_linux-aarch64 13.1.0 hb5b3640_0
    - libstdcxx-ng 13.1.0 h452befe_0
    - libtiff 4.5.1 h360e80f_0
    - libuuid 2.38.1 hb4cce97_0
    - libwebp-base 1.3.1 h31becfc_0
    - libxcb 1.15 h2a766a3_0
    - libxml2 2.11.4 h164fba4_0
    - libzlib 1.2.13 h31becfc_5
    - make 4.3 h309ac5b_1
    - ncurses 6.4 h2e1726e_0
    - openssl 3.1.2 h31becfc_0
    - pango 1.50.14 hb4276a1_1
    - pcre2 10.40 he7b27c6_0
    - pixman 0.40.0 hb9de7d4_0
    - pthread-stubs 0.4 hb9de7d4_1001
    - r-base 4.3.1 h7539d2d_3
    - r-cli 3.6.1 r43h93f32a7_1
    - r-colorspace 2.1_0 r43h25e906a_1
    - r-crayon 1.5.2 r43hc72bb7e_2
    - r-ellipsis 0.3.2 r43h25e906a_2
    - r-fansi 1.0.4 r43h25e906a_1
    - r-farver 2.1.1 r43h93f32a7_2
    - r-ggplot2 3.4.2 r43hc72bb7e_1
    - r-glue 1.6.2 r43h25e906a_2
    - r-gtable 0.3.3 r43hc72bb7e_1
    - r-isoband 0.2.7 r43h93f32a7_2
    - r-labeling 0.4.2 r43hc72bb7e_3
    - r-lattice 0.21_8 r43h25e906a_1
    - r-lifecycle 1.0.3 r43hc72bb7e_2
    - r-magrittr 2.0.3 r43h25e906a_2
    - r-mass 7.3_60 r43h25e906a_1
    - r-matrix 1.6_0 r43hd98ab41_0
    - r-matrixstats 1.0.0 r43h25e906a_1
    - r-mgcv 1.9_0 r43hd98ab41_0
    - r-munsell 0.5.0 r43hc72bb7e_1006
    - r-nlme 3.1_162 r43hd5055e1_1
    - r-pillar 1.9.0 r43hc72bb7e_1
    - r-pkgconfig 2.0.3 r43hc72bb7e_3
    - r-r6 2.5.1 r43hc72bb7e_2
    - r-rcolorbrewer 1.1_3 r43h785f33e_2
    - r-rlang 1.1.1 r43h93f32a7_1
    - r-scales 1.2.1 r43hc72bb7e_2
    - r-tibble 3.2.1 r43h25e906a_2
    - r-utf8 1.2.3 r43h25e906a_1
    - r-vctrs 0.6.3 r43h93f32a7_0
    - r-viridislite 0.4.2 r43hc72bb7e_1
    - r-withr 2.5.0 r43hc72bb7e_2
    - readline 8.2 h8fc344f_1
    - sed 4.8 ha0d5d3d_0
    - sysroot_linux-aarch64 2.17 h5b4a56d_13
    - tk 8.6.12 hd8af866_0
    - tktable 2.10 hcd05d48_3
    - xorg-kbproto 1.0.7 h3557bc0_1002
    - xorg-libice 1.1.1 h7935292_0
    - xorg-libsm 1.2.4 h5a01bc2_0
    - xorg-libx11 1.8.6 h055a233_0
    - xorg-libxau 1.0.11 h31becfc_0
    - xorg-libxdmcp 1.1.3 h3557bc0_0
    - xorg-libxext 1.3.4 h2a766a3_2
    - xorg-libxrender 0.9.11 h7935292_0
    - xorg-libxt 1.3.0 h7935292_1
    - xorg-renderproto 0.11.1 h3557bc0_1002
    - xorg-xextproto 7.3.0 h2a766a3_1003
    - xorg-xproto 7.0.31 h3557bc0_1007
    - xz 5.2.6 h9cdd2b7_0
    - zlib 1.2.13 h31becfc_5
    - zstd 1.5.2 h4c53e97_7
  run:
    - bioconductor-limma >=3.56.0,<3.57.0
    - r-base >=4.3,<4.4.0a0
    - r-ggplot2
    - r-matrixstats
test:
  commands:
    - $R -e "library('DEqMS')"
about:
  description: DEqMS is developped on top of Limma. However, Limma assumes same prior
    variance for all genes. In proteomics, the accuracy of protein abundance estimates
    varies by the number of peptides/PSMs quantified in both label-free and labelled
    data. Proteins quantification by multiple peptides or PSMs are more accurate.
    DEqMS package is able to estimate different prior variances for proteins quantified
    by different number of PSMs/peptides, therefore acchieving better accuracy. The
    package can be applied to analyze both label-free and labelled proteomics data.
  home: https://bioconductor.org/packages/3.17/bioc/html/DEqMS.html
  license: LGPL
  license_file: /opt/conda/conda-bld/bioconductor-deqms_1691532773500/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac/lib/R/share/licenses/LGPL-3
  summary: a tool to perform statistical analysis of differential protein expression
    for quantitative proteomics data.
extra:
  copy_test_source_files: true
  final: true
