#### Run unit tests using RUnit
  
library(devtools)
library(RUnit)

load_all("~/DropboxUmass/Bioconductor/Trunk/CRISPRseek")
document("~/DropboxUmass/Bioconductor/Trunk/CRISPRseek")

source("~/DropboxUmass/Bioconductor/Trunk/CRISPRseek/inst/unitTests/test_compare2Sequences.R")
test_compare2Sequences()
source("~/DropboxUmass/Bioconductor/Trunk/CRISPRseek/inst/unitTests/test_compare2Sequences.R")
test_compare2Sequences()
source("~/DropboxUmass/Bioconductor/Trunk/CRISPRseek/inst/unitTests/test_gRNAprovidedCompare2Seqs.R")
load_all("~/DropboxUmass/Bioconductor/Trunk/CRISPRseek")
document("~/DropboxUmass/Bioconductor/Trunk/CRISPRseek")
source("~/DropboxUmass/Bioconductor/Trunk/CRISPRseek/inst/unitTests/test_gRNAprovidedCompare2Seqs.R")
test_gRNAprovidedCompare2Seqs()
source("~/DropboxUmass/Bioconductor/Trunk/CRISPRseek/inst/unitTests/test_compare2Sequences.R")
test_compare2Sequences()
source("~/DropboxUmass/Bioconductor/Trunk/CRISPRseek/inst/unitTests/test_targetNotFound.R")
test_targetNotFound()
source("~/DropboxUmass/Bioconductor/Trunk/CRISPRseek/inst/unitTests/test_deepCpf1.R")
test_deepCpf1()
source("~/DropboxUmass/Bioconductor/Trunk/CRISPRseek/inst/unitTests/test_gRNAprovidedNoPAM.R")
test_gRNAprovided()
test_gRNAprovidedNoPAM()
source("~/DropboxUmass/Bioconductor/Trunk/CRISPRseek/inst/unitTests/test_getOfftargetScore2.R")
test_getOfftargetScore2()
source("~/DropboxUmass/Bioconductor/Trunk/CRISPRseek/inst/unitTests/test_mouse_orgAnn_annotateExon.R")
test_mouse_orgAnn_annotateExon()
source("~/DropboxUmass/Bioconductor/Trunk/CRISPRseek/inst/unitTests/test_offTargetAnalysis.R")
test_offTargetAnalysis()
history()

