Package: CNVRanger
Version: 1.16.4
Title: Summarization and expression/phenotype association of CNV ranges
Author: Ludwig Geistlinger [aut, cre], Vinicius Henrique da Silva [aut],
    Marcel Ramos [ctb], Levi Waldron [ctb]
Maintainer: Ludwig Geistlinger <ludwig_geistlinger@hms.harvard.edu>
Depends: GenomicRanges, RaggedExperiment
Imports: BiocGenerics, BiocParallel, GDSArray, GenomeInfoDb, IRanges,
        S4Vectors, SNPRelate, SummarizedExperiment, data.table, edgeR,
        gdsfmt, grDevices, lattice, limma, methods, plyr, qqman,
        rappdirs, reshape2, stats, utils
Suggests: AnnotationHub, BSgenome.Btaurus.UCSC.bosTau6.masked,
        BiocStyle, ComplexHeatmap, Gviz, MultiAssayExperiment,
        TCGAutils, TxDb.Hsapiens.UCSC.hg19.knownGene, curatedTCGAData,
        ensembldb, grid, knitr, org.Hs.eg.db, regioneR, rmarkdown,
        statmod
Description: The CNVRanger package implements a comprehensive tool suite for CNV analysis.
    This includes functionality for summarizing individual CNV calls across a population,
    assessing overlap with functional genomic regions, and association analysis 
    with gene expression and quantitative phenotypes.
License: Artistic-2.0
BugReports: https://github.com/waldronlab/CNVRanger/issues
Encoding: UTF-8
VignetteBuilder: knitr
biocViews: CopyNumberVariation, DifferentialExpression, GeneExpression,
        GenomeWideAssociation, GenomicVariation, Microarray, RNASeq,
        SNP
RoxygenNote: 7.1.2
git_url: https://git.bioconductor.org/packages/CNVRanger
git_branch: RELEASE_3_17
git_last_commit: ccde48f
git_last_commit_date: 2023-06-17
Date/Publication: 2023-06-18
NeedsCompilation: no
Packaged: 2023-06-18 20:20:27 UTC; biocbuild
Built: R 4.3.1; ; 2023-09-01 07:53:25 UTC; unix
