- name: bactopia-bactopia_help
  command: bash -c 'nextflow run ./main.nf --help > bactopia-help.txt'
  tags:
    - bactopia
    - bactopia_help
  files:
    - path: bactopia-help.txt
      contains: ['Required', 'bactopia', 'version', 'dependencies']

- name: bactopia-bactopia_wfs
  command: bash -c 'nextflow run ./main.nf --list_wfs > bactopia-wfs.txt'
  tags:
    - bactopia
    - bactopia_help
  files:
    - path: bactopia-wfs.txt
      contains: ['staphopia', 'Subworkflows', 'Modules', 'tbprofiler']
