- name: tblastx-test
  command: bash -c 'nextflow run ./subworkflows/local/tblastx/test.nf -entry test_tblastx --wf tblastx -c nextflow.config ${BACTOPIA_ARGS}'
  tags:
    - tblastx
    - tools
  files:
    - path: bactopia/bactopia-runs/tblastx/merged-results/tblastx.tsv
      md5sum: 12717c8aa587241825144a1f0c929ab6
    - path: bactopia/bactopia-runs/tblastx/merged-results/logs/tblastx-concat/nf-merged-results.begin
      md5sum: d41d8cd98f00b204e9800998ecf8427e
    - path: bactopia/bactopia-runs/tblastx/merged-results/logs/tblastx-concat/nf-merged-results.err
    - path: bactopia/bactopia-runs/tblastx/merged-results/logs/tblastx-concat/nf-merged-results.log
    - path: bactopia/bactopia-runs/tblastx/merged-results/logs/tblastx-concat/nf-merged-results.out
    - path: bactopia/bactopia-runs/tblastx/merged-results/logs/tblastx-concat/nf-merged-results.run
      contains: ['NEXTFLOW TASK', '$NXF_ENTRY']
    - path: bactopia/bactopia-runs/tblastx/merged-results/logs/tblastx-concat/nf-merged-results.sh
      contains: ['csvtk', 'END_VERSIONS']
    - path: bactopia/bactopia-runs/tblastx/merged-results/logs/tblastx-concat/nf-merged-results.trace
      contains: ['nextflow.trace']
    - path: bactopia/bactopia-runs/tblastx/merged-results/logs/tblastx-concat/versions.yml
      contains: ['csvtk']
    - path: bactopia/bactopia-runs/tblastx/nf-reports/tblastx-dag.dot
      contains: ['tblastxdag', 'TBLASTX', 'versions']
    - path: bactopia/bactopia-runs/tblastx/nf-reports/tblastx-report.html
      contains: ['html', 'Nextflow', 'Report']
    - path: bactopia/bactopia-runs/tblastx/nf-reports/tblastx-timeline.html
      contains: ['html', 'Nextflow', 'timeline']
    - path: bactopia/bactopia-runs/tblastx/nf-reports/tblastx-trace.txt
      contains: ['task_id']
    - path: bactopia/SRX1390622/tools/tblastx/SRX1390622.tblastx.tsv
      md5sum: 12717c8aa587241825144a1f0c929ab6
    - path: bactopia/SRX1390622/tools/tblastx/logs/nf-tblastx.begin
      md5sum: d41d8cd98f00b204e9800998ecf8427e
    - path: bactopia/SRX1390622/tools/tblastx/logs/nf-tblastx.err
    - path: bactopia/SRX1390622/tools/tblastx/logs/nf-tblastx.log
    - path: bactopia/SRX1390622/tools/tblastx/logs/nf-tblastx.out
    - path: bactopia/SRX1390622/tools/tblastx/logs/nf-tblastx.run
      contains: ['NEXTFLOW TASK', '$NXF_ENTRY']
    - path: bactopia/SRX1390622/tools/tblastx/logs/nf-tblastx.sh
      contains: ['tblastx', 'END_VERSIONS']
    - path: bactopia/SRX1390622/tools/tblastx/logs/nf-tblastx.trace
      contains: ['nextflow.trace']
    - path: bactopia/SRX1390622/tools/tblastx/logs/versions.yml
      md5sum: 120c6925adb5648d8cbbc7580a8f2973

- name: tblastx-test_gz
  command: bash -c 'nextflow run ./subworkflows/local/tblastx/test.nf -entry test_tblastx_gz --wf tblastx -c nextflow.config ${BACTOPIA_ARGS}'
  tags:
    - tblastx
    - tools
  files:
    - path: bactopia/bactopia-runs/tblastx/merged-results/tblastx.tsv
      md5sum: 12717c8aa587241825144a1f0c929ab6
    - path: bactopia/bactopia-runs/tblastx/merged-results/logs/tblastx-concat/nf-merged-results.begin
      md5sum: d41d8cd98f00b204e9800998ecf8427e
    - path: bactopia/bactopia-runs/tblastx/merged-results/logs/tblastx-concat/nf-merged-results.err
    - path: bactopia/bactopia-runs/tblastx/merged-results/logs/tblastx-concat/nf-merged-results.log
    - path: bactopia/bactopia-runs/tblastx/merged-results/logs/tblastx-concat/nf-merged-results.out
    - path: bactopia/bactopia-runs/tblastx/merged-results/logs/tblastx-concat/nf-merged-results.run
      contains: ['NEXTFLOW TASK', '$NXF_ENTRY']
    - path: bactopia/bactopia-runs/tblastx/merged-results/logs/tblastx-concat/nf-merged-results.sh
      contains: ['csvtk', 'END_VERSIONS']
    - path: bactopia/bactopia-runs/tblastx/merged-results/logs/tblastx-concat/nf-merged-results.trace
      contains: ['nextflow.trace']
    - path: bactopia/bactopia-runs/tblastx/merged-results/logs/tblastx-concat/versions.yml
      contains: ['csvtk']
    - path: bactopia/bactopia-runs/tblastx/nf-reports/tblastx-dag.dot
      contains: ['tblastxdag', 'TBLASTX', 'versions']
    - path: bactopia/bactopia-runs/tblastx/nf-reports/tblastx-report.html
      contains: ['html', 'Nextflow', 'Report']
    - path: bactopia/bactopia-runs/tblastx/nf-reports/tblastx-timeline.html
      contains: ['html', 'Nextflow', 'timeline']
    - path: bactopia/bactopia-runs/tblastx/nf-reports/tblastx-trace.txt
      contains: ['task_id']
    - path: bactopia/SRX1390622/tools/tblastx/SRX1390622.tblastx.tsv
      md5sum: 12717c8aa587241825144a1f0c929ab6
    - path: bactopia/SRX1390622/tools/tblastx/logs/nf-tblastx.begin
      md5sum: d41d8cd98f00b204e9800998ecf8427e
    - path: bactopia/SRX1390622/tools/tblastx/logs/nf-tblastx.err
    - path: bactopia/SRX1390622/tools/tblastx/logs/nf-tblastx.log
    - path: bactopia/SRX1390622/tools/tblastx/logs/nf-tblastx.out
    - path: bactopia/SRX1390622/tools/tblastx/logs/nf-tblastx.run
      contains: ['NEXTFLOW TASK', '$NXF_ENTRY']
    - path: bactopia/SRX1390622/tools/tblastx/logs/nf-tblastx.sh
      contains: ['tblastx', 'END_VERSIONS']
    - path: bactopia/SRX1390622/tools/tblastx/logs/nf-tblastx.trace
      contains: ['nextflow.trace']
    - path: bactopia/SRX1390622/tools/tblastx/logs/versions.yml
      md5sum: 18a4801a563bfac01aa252fae6e608b7
