- name: pasty-test
  command: bash -c 'nextflow run ./subworkflows/local/pasty/test.nf -entry test_pasty --wf pasty -c nextflow.config ${BACTOPIA_ARGS}'
  tags:
    - pasty
    - bactopia-tools
  files:
    - path: bactopia/bactopia-runs/pasty/merged-results/logs/pasty-concat/nf-merged-results.begin
      md5sum: d41d8cd98f00b204e9800998ecf8427e
    - path: bactopia/bactopia-runs/pasty/merged-results/logs/pasty-concat/nf-merged-results.err
    - path: bactopia/bactopia-runs/pasty/merged-results/logs/pasty-concat/nf-merged-results.log
    - path: bactopia/bactopia-runs/pasty/merged-results/logs/pasty-concat/nf-merged-results.out
    - path: bactopia/bactopia-runs/pasty/merged-results/logs/pasty-concat/nf-merged-results.run
      contains: ['NEXTFLOW TASK', '$NXF_ENTRY']
    - path: bactopia/bactopia-runs/pasty/merged-results/logs/pasty-concat/nf-merged-results.sh
      contains: ['csvtk', 'END_VERSIONS']
    - path: bactopia/bactopia-runs/pasty/merged-results/logs/pasty-concat/nf-merged-results.trace
      contains: ['nextflow.trace']
    - path: bactopia/bactopia-runs/pasty/merged-results/logs/pasty-concat/versions.yml
      contains: ['csvtk']
    - path: bactopia/bactopia-runs/pasty/merged-results/pasty.tsv
      md5sum: 0dd60257623fbc211cc0b5e4b215652f
    - path: bactopia/bactopia-runs/pasty/nf-reports/pasty-dag.dot
      contains: ['pastydag', 'PASTY', 'versions']
    - path: bactopia/bactopia-runs/pasty/nf-reports/pasty-report.html
      contains: ['html', 'Nextflow', 'Report']
    - path: bactopia/bactopia-runs/pasty/nf-reports/pasty-timeline.html
      contains: ['html', 'Nextflow', 'timeline']
    - path: bactopia/bactopia-runs/pasty/nf-reports/pasty-trace.txt
      contains: ['task_id']
    - path: bactopia/GCF_000006765/tools/pasty/GCF_000006765.blastn.tsv
      md5sum: ec58783a0ded5271804a072d74a4a0d0
    - path: bactopia/GCF_000006765/tools/pasty/GCF_000006765.details.tsv
      md5sum: 9d08189d2129a4d5e37d1ace16e2fd8a
    - path: bactopia/GCF_000006765/tools/pasty/GCF_000006765.tsv
      md5sum: 0dd60257623fbc211cc0b5e4b215652f
    - path: bactopia/GCF_000006765/tools/pasty/logs/nf-pasty.begin
      md5sum: d41d8cd98f00b204e9800998ecf8427e
    - path: bactopia/GCF_000006765/tools/pasty/logs/nf-pasty.err
    - path: bactopia/GCF_000006765/tools/pasty/logs/nf-pasty.log
    - path: bactopia/GCF_000006765/tools/pasty/logs/nf-pasty.out
    - path: bactopia/GCF_000006765/tools/pasty/logs/nf-pasty.run
      contains: ['NEXTFLOW TASK', '$NXF_ENTRY']
    - path: bactopia/GCF_000006765/tools/pasty/logs/nf-pasty.sh
      contains: ['pasty', 'END_VERSIONS']
    - path: bactopia/GCF_000006765/tools/pasty/logs/nf-pasty.trace
      contains: ['nextflow.trace']
    - path: bactopia/GCF_000006765/tools/pasty/logs/versions.yml
      md5sum: 55048014915bb7d9efdd8c838ce0d48d
