/*
This file includes default parameter values.
*/

params {
    // panaroo
    use_panaroo = false
    panaroo_mode = 'strict'
    panaroo_alignment = 'core'
    panaroo_aligner = 'mafft'
    panaroo_core_threshold = 0.95
    panaroo_threshold = 0.98
    panaroo_family_threshold = 0.7
    len_dif_percent = 0.98
    merge_paralogs = false
    panaroo_opts = ''
}

