{
    "$schema": "http://json-schema.org/draft-07/schema",
    "$id": "https://raw.githubusercontent.com/bactopia/bactopia/master/modules/nf-core/snippy/core/params.json",
    "title": "Snippy-Core parameters",
    "description": "A module for rapid variant calling from sequence reads",
    "type": "object",
    "definitions": {
        "snippycore_parameters": {
            "title": "Snippy-Core Parameters",
            "type": "object",
            "description": "",
            "default": "",
            "fa_icon": "fa-solid fa-toolbox",
            "properties": {
                "maxhap": {
                    "type": "integer",
                    "description": "Largest haplotype to decompose",
                    "default": 100,
                    "fa_icon": "fas fa-angle-double-down"
                },
                "mask": {
                    "type": "string",
                    "description": "BED file of sites to mask",
                    "fa_icon": "fas fa-angle-double-down"
                },
                "mask_char": {
                    "type": "string",
                    "description": "Masking character",
                    "default": "X",
                    "fa_icon": "fas fa-angle-double-down"
                },
                "snippy_core_opts": {
                    "type": "string",
                    "description": "Extra options in quotes for snippy-core",
                    "fa_icon": "fas fa-italic"
                }
            }
        }
    },
    "allOf": [
        {
            "$ref": "#/definitions/snippycore_parameters"
        }
    ]
}
