- name: pbptyper-bactopia_help
  command: bash -c 'nextflow run ./main.nf --wf pbptyper -c nextflow.config --help > pbptyper-help.txt'
  tags:
    - bactopia_help
    - pbptyper
  files:
    - path: pbptyper-help.txt
      contains: ['pbptyper', 'bactopia', 'version', 'dependencies']
