- name: staphtyper-bactopia_help
  command: bash -c 'nextflow run ./main.nf --wf staphtyper -c nextflow.config --help > staphtyper-help.txt'
  tags:
    - bactopia
    - bactopia_help
    - staphtyper
  files:
    - path: staphtyper-help.txt
      contains: ['staphtyper', 'bactopia', 'version', 'dependencies']

