{
    "$schema": "http://json-schema.org/draft-07/schema",
    "$id": "https://raw.githubusercontent.com/bactopia/bactopia/master/modules/nf-core/abritamr/run/params.json",
    "title": "abriTAMR Run Module",
    "description": "A module to identify antimicrobial resistance in assembled contigs",
    "type": "object",
    "definitions": {
        "abritamr_parameters": {
            "title": "abriTAMR Parameters",
            "type": "object",
            "description": "",
            "default": "",
            "fa_icon": "fas fa-exclamation-circle",
            "properties": {
                "abritamr_species": {
                    "type": "string",
                    "description": "Use species specific point mutations, must provide a valid species",
                    "fa_icon": "fas fa-expand-arrows-alt"
                },
                "abritamr_identity": {
                    "type": "integer",
                    "description": "Minimum identity of matches with amrfinder (0 - 1.0), defaults to amrfinder preset",
                    "fa_icon": "fas fa-expand-arrows-alt"
                }
            }
        }
    },
    "allOf": [
        {
            "$ref": "#/definitions/abritamr_parameters"
        }
    ]
}
