- name: checkm-bactopia_help
  command: bash -c 'nextflow run ./main.nf --wf checkm -c nextflow.config --help > checkm-help.txt'
  tags:
    - bactopia_help
    - checkm
  files:
    - path: checkm-help.txt
      contains: ['checkm', 'bactopia', 'version', 'dependencies']
