- name: phispy-test
  command: bash -c 'nextflow run ./subworkflows/local/phispy/test.nf -entry test_phispy --wf phispy -c nextflow.config ${BACTOPIA_ARGS}'
  tags:
    - phispy
    - bactopia-tools
  files:
    - path: bactopia/GCF_900478275l/tools/phispy/GCF_900478275l.tsv
      contains: ['pp1', 'NZ_LS483480', 'flank']
    - path: bactopia/GCF_900478275l/tools/phispy/logs/GCF_900478275l.log
      contains: ['PROPHAGE', 'NZ_LS483480', 'Done']
    - path: bactopia/GCF_900478275l/tools/phispy/logs/nf-phispy.begin
    - path: bactopia/GCF_900478275l/tools/phispy/logs/nf-phispy.err
    - path: bactopia/GCF_900478275l/tools/phispy/logs/nf-phispy.log
    - path: bactopia/GCF_900478275l/tools/phispy/logs/nf-phispy.out
    - path: bactopia/GCF_900478275l/tools/phispy/logs/nf-phispy.run
      contains: ['NEXTFLOW TASK', '$NXF_ENTRY']
    - path: bactopia/GCF_900478275l/tools/phispy/logs/nf-phispy.sh
      md5sum: 075d626d10b81c17e88987c82fc117d3
    - path: bactopia/GCF_900478275l/tools/phispy/logs/nf-phispy.trace
      contains: ['nextflow.trace']
    - path: bactopia/GCF_900478275l/tools/phispy/logs/versions.yml
      md5sum: 7e5c5e8dc91d06bf9775a6ff261dbb9b
    - path: bactopia/bactopia-runs/phispy/merged-results/logs/phispy-concat/nf-merged-results.begin
    - path: bactopia/bactopia-runs/phispy/merged-results/logs/phispy-concat/nf-merged-results.err
    - path: bactopia/bactopia-runs/phispy/merged-results/logs/phispy-concat/nf-merged-results.log
    - path: bactopia/bactopia-runs/phispy/merged-results/logs/phispy-concat/nf-merged-results.out
    - path: bactopia/bactopia-runs/phispy/merged-results/logs/phispy-concat/nf-merged-results.run
      contains: ['NEXTFLOW TASK', '$NXF_ENTRY']
    - path: bactopia/bactopia-runs/phispy/merged-results/logs/phispy-concat/nf-merged-results.sh
      md5sum: 83809f01b92d8939b60bd46d09070763
    - path: bactopia/bactopia-runs/phispy/merged-results/logs/phispy-concat/nf-merged-results.trace
      contains: ['nextflow.trace']
    - path: bactopia/bactopia-runs/phispy/merged-results/logs/phispy-concat/versions.yml
      contains: ['csvtk']
    - path: bactopia/bactopia-runs/phispy/merged-results/phispy.tsv
      md5sum: 7d63fb49ac9013d1e59a1c7f9ccf7960
    - path: bactopia/bactopia-runs/phispy/nf-reports/phispy-dag.dot
      contains: ['phispydag', 'PHISPY', 'versions']
    - path: bactopia/bactopia-runs/phispy/nf-reports/phispy-report.html
      contains: ['html', 'Nextflow', 'Report']
    - path: bactopia/bactopia-runs/phispy/nf-reports/phispy-timeline.html
      contains: ['html', 'Nextflow', 'timeline']
    - path: bactopia/bactopia-runs/phispy/nf-reports/phispy-trace.txt
      contains: ['task_id']
