name: teton
description: Taxonomic classification and abundances and host read removal
icon: false
keywords:
  - abundances
  - classify
  - host removal
  - taxonomy
modules:
  - kraken2
  - midas
  - scrubber
input:
  - meta:
    type: map
    description: |
      Groovy Map containing sample information
      e.g. [ id:'test', single_end:false ]
output:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
docs:
  meta:
    title: teton
    description: >
      A Bactopia Tool which uses...
  introduction: |
      The `teton` module uses...
  output:
    tree: |

    add_note: false
    folders:
      - name: Top Level
        description: |
          Below are results that are in the base directory.
        table: |
          | Filename    | Description |
          |-------------|-------------|
          |  |  |
      - name: teton
        description: |
          Below is a description of the _per-sample_ results from [teton](SUBWORKFLOW_LINK).
        table: |
          | Filename              | Description |
          |-----------------------|-------------|
          |  |  |
  citations:
    - kraken2
    - midas
    - srahumanscrubber
