- name: fastani-test
  command: bash -c 'nextflow run ./subworkflows/local/fastani/test.nf -entry test_fastani --wf fastani -c nextflow.config ${BACTOPIA_ARGS}'
  tags:
    - fastani
    - bactopia-tools
  files:
    - path: bactopia/bactopia-runs/fastani/fastani/GCA_000027305.tsv
      contains: ['query', 'GCF_900478275', 'GCA_000027305']
    - path: bactopia/bactopia-runs/fastani/fastani/GCF_900478275.tsv
      contains: ['query', 'GCF_900478275', 'GCA_000027305']
    - path: bactopia/bactopia-runs/fastani/merged-results/fastani.tsv
      contains: ['query', 'GCF_900478275', 'GCA_000027305']
    - path: bactopia/bactopia-runs/fastani/merged-results/logs/fastani-concat/nf-merged-results.begin
      md5sum: d41d8cd98f00b204e9800998ecf8427e
    - path: bactopia/bactopia-runs/fastani/merged-results/logs/fastani-concat/nf-merged-results.err
    - path: bactopia/bactopia-runs/fastani/merged-results/logs/fastani-concat/nf-merged-results.log
    - path: bactopia/bactopia-runs/fastani/merged-results/logs/fastani-concat/nf-merged-results.out
    - path: bactopia/bactopia-runs/fastani/merged-results/logs/fastani-concat/nf-merged-results.run
      contains: ['NEXTFLOW TASK', '$NXF_ENTRY']
    - path: bactopia/bactopia-runs/fastani/merged-results/logs/fastani-concat/nf-merged-results.sh
      contains: ['csvtk', 'END_VERSIONS']
    - path: bactopia/bactopia-runs/fastani/merged-results/logs/fastani-concat/nf-merged-results.trace
      contains: ['nextflow.trace']
    - path: bactopia/bactopia-runs/fastani/merged-results/logs/fastani-concat/versions.yml
      contains: ['csvtk']
    - path: bactopia/bactopia-runs/fastani/nf-reports/fastani-dag.dot
      contains: ['fastanidag', 'FASTANI', 'versions']
    - path: bactopia/bactopia-runs/fastani/nf-reports/fastani-report.html
      contains: ['html', 'Nextflow', 'Report']
    - path: bactopia/bactopia-runs/fastani/nf-reports/fastani-timeline.html
      contains: ['html', 'Nextflow', 'timeline']
    - path: bactopia/bactopia-runs/fastani/nf-reports/fastani-trace.txt
      contains: ['task_id']
