{
    "$schema": "http://json-schema.org/draft-07/schema",
    "$id": "https://raw.githubusercontent.com/bactopia/bactopia/master/modules/nf-core/snpdists/params.json",
    "title": "SNP-Dists Module",
    "description": "Pairwise SNP distance matrix from a FASTA sequence alignment",
    "type": "object",
    "definitions": {
        "snpdists_parameters": {
            "title": "SNP-Dists Parameters",
            "type": "object",
            "description": "",
            "default": "",
            "fa_icon": "fas fa-exclamation-circle",
            "properties": {
                "a": {
                    "type": "boolean",
                    "default": false,
                    "description": "Count all differences not just [AGTC]",
                    "fa_icon": "fas fa-expand-arrows-alt"
                },
                "b": {
                    "type": "boolean",
                    "default": false,
                    "description": "Keep top left corner cell",
                    "fa_icon": "fas fa-expand-arrows-alt",
                    "hidden": true
                },
                "csv": {
                    "type": "boolean",
                    "default": false,
                    "description": "Output CSV instead of TSV",
                    "fa_icon": "fas fa-expand-arrows-alt",
                    "hidden": true
                },
                "k": {
                    "type": "boolean",
                    "default": false,
                    "description": "Keep case, don't uppercase all letters",
                    "fa_icon": "fas fa-expand-arrows-alt",
                    "hidden": true
                }
            }
        }
    },
    "allOf": [
        {
            "$ref": "#/definitions/snpdists_parameters"
        }
    ]
}
