- name: mashdist-test
  command: bash -c 'nextflow run ./subworkflows/local/mashdist/test.nf -entry test_mashdist --wf mashdist -c nextflow.config ${BACTOPIA_ARGS}'
  tags:
    - mashdist
    - bactopia-tools
  files:
    - path: bactopia/bactopia-runs/mashdist/merged-results/logs/mashdist-concat/nf-merged-results.begin
      md5sum: d41d8cd98f00b204e9800998ecf8427e
    - path: bactopia/bactopia-runs/mashdist/merged-results/logs/mashdist-concat/nf-merged-results.err
    - path: bactopia/bactopia-runs/mashdist/merged-results/logs/mashdist-concat/nf-merged-results.log
    - path: bactopia/bactopia-runs/mashdist/merged-results/logs/mashdist-concat/nf-merged-results.out
    - path: bactopia/bactopia-runs/mashdist/merged-results/logs/mashdist-concat/nf-merged-results.run
      contains: ['NEXTFLOW TASK', '$NXF_ENTRY']
    - path: bactopia/bactopia-runs/mashdist/merged-results/logs/mashdist-concat/nf-merged-results.sh
      contains: ['csvtk', 'END_VERSIONS']
    - path: bactopia/bactopia-runs/mashdist/merged-results/logs/mashdist-concat/nf-merged-results.trace
      contains: ['nextflow.trace']
    - path: bactopia/bactopia-runs/mashdist/merged-results/logs/mashdist-concat/versions.yml
      contains: ['csvtk']
    - path: bactopia/bactopia-runs/mashdist/merged-results/mashdist.tsv
      md5sum: ba9d178c2f9598e4c8d2dde49d59be50
    - path: bactopia/bactopia-runs/mashdist/nf-reports/mashdist-dag.dot
      contains: ['mashdistdag', 'MASHDIST', 'versions']
    - path: bactopia/bactopia-runs/mashdist/nf-reports/mashdist-report.html
      contains: ['html', 'Nextflow', 'Report']
    - path: bactopia/bactopia-runs/mashdist/nf-reports/mashdist-timeline.html
      contains: ['html', 'Nextflow', 'timeline']
    - path: bactopia/bactopia-runs/mashdist/nf-reports/mashdist-trace.txt
      contains: ['task_id']
    - path: bactopia/GCF_000292685/tools/mashdist/mashdist/GCF_000292685-dist.txt
      md5sum: ba9d178c2f9598e4c8d2dde49d59be50
    - path: bactopia/GCF_000292685/tools/mashdist/mashdist/logs/nf-mashdist.begin
      md5sum: d41d8cd98f00b204e9800998ecf8427e
    - path: bactopia/GCF_000292685/tools/mashdist/mashdist/logs/nf-mashdist.err
      contains: ["Estimated", "genome", "coverage"]
    - path: bactopia/GCF_000292685/tools/mashdist/mashdist/logs/nf-mashdist.log
      contains: ["Estimated", "genome", "coverage"]
    - path: bactopia/GCF_000292685/tools/mashdist/mashdist/logs/nf-mashdist.out
      md5sum: d41d8cd98f00b204e9800998ecf8427e
    - path: bactopia/GCF_000292685/tools/mashdist/mashdist/logs/nf-mashdist.run
      contains: ['NEXTFLOW TASK', '$NXF_ENTRY']
    - path: bactopia/GCF_000292685/tools/mashdist/mashdist/logs/nf-mashdist.sh
      contains: ['mash', 'shared', 'END_VERSIONS']
    - path: bactopia/GCF_000292685/tools/mashdist/mashdist/logs/nf-mashdist.trace
      contains: ['nextflow.trace']
    - path: bactopia/GCF_000292685/tools/mashdist/mashdist/logs/versions.yml
      md5sum: 69672baee5da33f7b9b4e722a797a109
