- name: plasmidfinder-bactopia_help
  command: bash -c 'nextflow run ./main.nf --wf plasmidfinder -c nextflow.config --help > plasmidfinder-help.txt'
  tags:
    - bactopia_help
    - plasmidfinder
  files:
    - path: plasmidfinder-help.txt
      contains: ['plasmidfinder', 'bactopia', 'version', 'dependencies']
