- name: shigatyper-bactopia_help
  command: bash -c 'nextflow run ./main.nf --wf shigatyper -c nextflow.config --help > shigatyper-help.txt'
  tags:
    - bactopia_help
    - shigatyper
  files:
    - path: shigatyper-help.txt
      contains: ['shigatyper', 'bactopia', 'version', 'dependencies']
