- name: gubbins-bactopia_help
  command: bash -c 'nextflow run ./main.nf --wf gubbins -c nextflow.config --help > gubbins-help.txt'
  tags:
    - skip_gubbins
  files:
    - path: gubbins-help.txt
      contains: ['gubbins', 'bactopia', 'version', 'dependencies']
