- name: clonalframeml-bactopia_help
  command: bash -c 'nextflow run ./main.nf --wf clonalframeml -c nextflow.config --help > clonalframeml-help.txt'
  tags:
    - skip_clonalframeml
  files:
    - path: clonalframeml-help.txt
      contains: ['clonalframeml', 'bactopia', 'version', 'dependencies']
