---
# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/yaml-schema.json
name: "btyper3"
description: Taxonomic classification of Bacillus cereus group isolates from assemblies
keywords:
  - bacteria
  - classify
  - fasta
tools:
  - "btyper3":
      description: "In silico taxonomic classification of Bacillus cereus group isolates using assembled genomes"
      homepage: "https://github.com/lmc297/BTyper3"
      documentation: "https://github.com/lmc297/BTyper3"
      tool_dev_url: "https://github.com/lmc297/BTyper3"
      doi: "10.3389/fmicb.2020.580691"
      licence: "['GPL v3']"

input:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. `[ id:'test', single_end:false ]`
  - fasta:
      type: file
      description: A genome assembly in FASTA format.
      pattern: "*.{fasta|fasta.gz|fa|fa.gz|fna|fna.gz}"

output:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. `[ id:'test', single_end:false ]`
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
  - tsv:
      type: file
      description: Tab-delimited file of Btyper3 results
      pattern: "*_final_results.txt"
  - results:
      type: file
      description: A directory of results from Btyper3 run
      pattern: "results/*"

authors:
  - "@rpetit3"
