- name: mlst-bactopia_help
  command: bash -c 'nextflow run ./main.nf --wf mlst -c nextflow.config --help > mlst-help.txt'
  tags:
    - bactopia_help
    - mlst
  files:
    - path: mlst-help.txt
      contains: ['mlst', 'bactopia', 'version', 'dependencies']
