- name: ncbigenomedownload-test
  command: bash -c 'nextflow run ./subworkflows/local/ncbigenomedownload/test.nf -entry test_ncbigenomedownload --wf ncbigenomedownload --max_time 1 --format fasta --accession GCF_000292685.1 -c nextflow.config ${BACTOPIA_ARGS}'
  tags:
    - ncbigenomedownload
    - bactopia-tools
  files:
    - path: bactopia/bactopia-runs/ncbigenomedownload/ncbigenomedownload/GCF_000292685.1_ASM29268v1_genomic.fna.gz
      md5sum: f61a1eb1b151f456ecf847802c1dffbb
    - path: bactopia/bactopia-runs/ncbigenomedownload/ncbigenomedownload/logs/nf-ncbigenomedownload.begin
      md5sum: d41d8cd98f00b204e9800998ecf8427e
    - path: bactopia/bactopia-runs/ncbigenomedownload/ncbigenomedownload/logs/nf-ncbigenomedownload.err
      contains: ['Checking']
    - path: bactopia/bactopia-runs/ncbigenomedownload/ncbigenomedownload/logs/nf-ncbigenomedownload.log
      contains: ['Checking']
    - path: bactopia/bactopia-runs/ncbigenomedownload/ncbigenomedownload/logs/nf-ncbigenomedownload.out
    - path: bactopia/bactopia-runs/ncbigenomedownload/ncbigenomedownload/logs/nf-ncbigenomedownload.run
      contains: ['NEXTFLOW TASK', '$NXF_ENTRY']
    - path: bactopia/bactopia-runs/ncbigenomedownload/ncbigenomedownload/logs/nf-ncbigenomedownload.sh
      contains: ['ncbi-genome-download', 'END_VERSIONS']
    - path: bactopia/bactopia-runs/ncbigenomedownload/ncbigenomedownload/logs/nf-ncbigenomedownload.trace
      contains: ['nextflow.trace']
    - path: bactopia/bactopia-runs/ncbigenomedownload/ncbigenomedownload/logs/versions.yml
      md5sum: c90ae9fe716b5283d951a7975596001f
    - path: bactopia/bactopia-runs/ncbigenomedownload/nf-reports/ncbigenomedownload-dag.dot
      contains: ['ncbigenomedownloaddag', 'NCBIGENOMEDOWNLOAD', 'versions']
    - path: bactopia/bactopia-runs/ncbigenomedownload/nf-reports/ncbigenomedownload-report.html
      contains: ['html', 'Nextflow', 'Report']
    - path: bactopia/bactopia-runs/ncbigenomedownload/nf-reports/ncbigenomedownload-timeline.html
      contains: ['html', 'Nextflow', 'timeline']
    - path: bactopia/bactopia-runs/ncbigenomedownload/nf-reports/ncbigenomedownload-trace.txt
      contains: ['task_id']
