- name: ngmaster-test
  command: bash -c 'nextflow run ./subworkflows/local/ngmaster/test.nf -entry test_ngmaster --wf ngmaster -c nextflow.config ${BACTOPIA_ARGS}'
  tags:
    - ngmaster
    - bactopia-tools
  files:
    - path: bactopia/bactopia-runs/ngmaster/merged-results/logs/ngmaster-concat/nf-merged-results.begin
      md5sum: d41d8cd98f00b204e9800998ecf8427e
    - path: bactopia/bactopia-runs/ngmaster/merged-results/logs/ngmaster-concat/nf-merged-results.err
    - path: bactopia/bactopia-runs/ngmaster/merged-results/logs/ngmaster-concat/nf-merged-results.log
    - path: bactopia/bactopia-runs/ngmaster/merged-results/logs/ngmaster-concat/nf-merged-results.out
    - path: bactopia/bactopia-runs/ngmaster/merged-results/logs/ngmaster-concat/nf-merged-results.run
      contains: ['NEXTFLOW TASK', '$NXF_ENTRY']
    - path: bactopia/bactopia-runs/ngmaster/merged-results/logs/ngmaster-concat/nf-merged-results.sh
      contains: ['csvtk', 'END_VERSIONS']
    - path: bactopia/bactopia-runs/ngmaster/merged-results/logs/ngmaster-concat/nf-merged-results.trace
      contains: ['nextflow.trace']
    - path: bactopia/bactopia-runs/ngmaster/merged-results/logs/ngmaster-concat/versions.yml
      contains: ['csvtk']
    - path: bactopia/bactopia-runs/ngmaster/merged-results/ngmaster.tsv
      md5sum: a4e7f9199b0f37985fe0ad147c626532
    - path: bactopia/bactopia-runs/ngmaster/nf-reports/ngmaster-dag.dot
      contains: ['ngmasterdag', 'NGMASTER', 'versions']
    - path: bactopia/bactopia-runs/ngmaster/nf-reports/ngmaster-report.html
      contains: ['html', 'Nextflow', 'Report']
    - path: bactopia/bactopia-runs/ngmaster/nf-reports/ngmaster-timeline.html
      contains: ['html', 'Nextflow', 'timeline']
    - path: bactopia/bactopia-runs/ngmaster/nf-reports/ngmaster-trace.txt
      contains: ['task_id']
    - path: bactopia/GCF_001047255/tools/ngmaster/GCF_001047255.tsv
      md5sum: a4e7f9199b0f37985fe0ad147c626532
    - path: bactopia/GCF_001047255/tools/ngmaster/logs/nf-ngmaster.begin
      md5sum: d41d8cd98f00b204e9800998ecf8427e
    - path: bactopia/GCF_001047255/tools/ngmaster/logs/nf-ngmaster.err
    - path: bactopia/GCF_001047255/tools/ngmaster/logs/nf-ngmaster.log
    - path: bactopia/GCF_001047255/tools/ngmaster/logs/nf-ngmaster.out
    - path: bactopia/GCF_001047255/tools/ngmaster/logs/nf-ngmaster.run
      contains: ['NEXTFLOW TASK', '$NXF_ENTRY']
    - path: bactopia/GCF_001047255/tools/ngmaster/logs/nf-ngmaster.sh
      contains: ['ngmaster', 'END_VERSIONS']
    - path: bactopia/GCF_001047255/tools/ngmaster/logs/nf-ngmaster.trace
      contains: ['nextflow.trace']
    - path: bactopia/GCF_001047255/tools/ngmaster/logs/versions.yml
      md5sum: 815c03da8b663dd93853abc249b7948b
