- name: blastp-test
  command: bash -c 'nextflow run ./subworkflows/local/blastp/test.nf -entry test_blastp --wf blastp -c nextflow.config ${BACTOPIA_ARGS}'
  tags:
    - blastp
    - bactopia-tools
  files:
    - path: bactopia/bactopia-runs/blastp/merged-results/blastp.tsv
      md5sum: 3597b9b6cb1dae90582751a4a27df8f0
    - path: bactopia/bactopia-runs/blastp/merged-results/logs/blastp-concat/nf-merged-results.begin
      md5sum: d41d8cd98f00b204e9800998ecf8427e
    - path: bactopia/bactopia-runs/blastp/merged-results/logs/blastp-concat/nf-merged-results.err
    - path: bactopia/bactopia-runs/blastp/merged-results/logs/blastp-concat/nf-merged-results.log
    - path: bactopia/bactopia-runs/blastp/merged-results/logs/blastp-concat/nf-merged-results.out
    - path: bactopia/bactopia-runs/blastp/merged-results/logs/blastp-concat/nf-merged-results.run
      contains: ['NEXTFLOW TASK', '$NXF_ENTRY']
    - path: bactopia/bactopia-runs/blastp/merged-results/logs/blastp-concat/nf-merged-results.sh
      contains: ['csvtk', 'END_VERSIONS']
    - path: bactopia/bactopia-runs/blastp/merged-results/logs/blastp-concat/nf-merged-results.trace
      contains: ['nextflow.trace']
    - path: bactopia/bactopia-runs/blastp/merged-results/logs/blastp-concat/versions.yml
      contains: ['csvtk']
    - path: bactopia/bactopia-runs/blastp/nf-reports/blastp-dag.dot
      contains: ['blastpdag', 'BLASTP', 'versions']
    - path: bactopia/bactopia-runs/blastp/nf-reports/blastp-report.html
      contains: ['html', 'Nextflow', 'Report']
    - path: bactopia/bactopia-runs/blastp/nf-reports/blastp-timeline.html
      contains: ['html', 'Nextflow', 'timeline']
    - path: bactopia/bactopia-runs/blastp/nf-reports/blastp-trace.txt
      contains: ['task_id']
    - path: bactopia/SRX1390622/tools/blastp/SRX1390622.blastp.tsv
      md5sum: 3597b9b6cb1dae90582751a4a27df8f0
    - path: bactopia/SRX1390622/tools/blastp/logs/nf-blastp.begin
      md5sum: d41d8cd98f00b204e9800998ecf8427e
    - path: bactopia/SRX1390622/tools/blastp/logs/nf-blastp.err
    - path: bactopia/SRX1390622/tools/blastp/logs/nf-blastp.log
    - path: bactopia/SRX1390622/tools/blastp/logs/nf-blastp.out
    - path: bactopia/SRX1390622/tools/blastp/logs/nf-blastp.run
      contains: ['NEXTFLOW TASK', '$NXF_ENTRY']
    - path: bactopia/SRX1390622/tools/blastp/logs/nf-blastp.sh
      contains: ['blastp', 'END_VERSIONS']
    - path: bactopia/SRX1390622/tools/blastp/logs/nf-blastp.trace
      contains: ['nextflow.trace']
    - path: bactopia/SRX1390622/tools/blastp/logs/versions.yml
      md5sum: 42af37b58f6cc9837dda5793201993ad

- name: blastp-test_gz
  command: bash -c 'nextflow run ./subworkflows/local/blastp/test.nf -entry test_blastp_gz --wf blastp -c nextflow.config ${BACTOPIA_ARGS}'
  tags:
    - blastp
    - bactopia-tools
  files:
    - path: bactopia/bactopia-runs/blastp/merged-results/blastp.tsv
      md5sum: 3597b9b6cb1dae90582751a4a27df8f0
    - path: bactopia/bactopia-runs/blastp/merged-results/logs/blastp-concat/nf-merged-results.begin
      md5sum: d41d8cd98f00b204e9800998ecf8427e
    - path: bactopia/bactopia-runs/blastp/merged-results/logs/blastp-concat/nf-merged-results.err
    - path: bactopia/bactopia-runs/blastp/merged-results/logs/blastp-concat/nf-merged-results.log
    - path: bactopia/bactopia-runs/blastp/merged-results/logs/blastp-concat/nf-merged-results.out
    - path: bactopia/bactopia-runs/blastp/merged-results/logs/blastp-concat/nf-merged-results.run
      contains: ['NEXTFLOW TASK', '$NXF_ENTRY']
    - path: bactopia/bactopia-runs/blastp/merged-results/logs/blastp-concat/nf-merged-results.sh
      contains: ['csvtk', 'END_VERSIONS']
    - path: bactopia/bactopia-runs/blastp/merged-results/logs/blastp-concat/nf-merged-results.trace
      contains: ['nextflow.trace']
    - path: bactopia/bactopia-runs/blastp/merged-results/logs/blastp-concat/versions.yml
      contains: ['csvtk']
    - path: bactopia/bactopia-runs/blastp/nf-reports/blastp-dag.dot
      contains: ['blastpdag', 'BLASTP', 'versions']
    - path: bactopia/bactopia-runs/blastp/nf-reports/blastp-report.html
      contains: ['html', 'Nextflow', 'Report']
    - path: bactopia/bactopia-runs/blastp/nf-reports/blastp-timeline.html
      contains: ['html', 'Nextflow', 'timeline']
    - path: bactopia/bactopia-runs/blastp/nf-reports/blastp-trace.txt
      contains: ['task_id']
    - path: bactopia/SRX1390622/tools/blastp/SRX1390622.blastp.tsv
      md5sum: 3597b9b6cb1dae90582751a4a27df8f0
    - path: bactopia/SRX1390622/tools/blastp/logs/nf-blastp.begin
      md5sum: d41d8cd98f00b204e9800998ecf8427e
    - path: bactopia/SRX1390622/tools/blastp/logs/nf-blastp.err
    - path: bactopia/SRX1390622/tools/blastp/logs/nf-blastp.log
    - path: bactopia/SRX1390622/tools/blastp/logs/nf-blastp.out
    - path: bactopia/SRX1390622/tools/blastp/logs/nf-blastp.run
      contains: ['NEXTFLOW TASK', '$NXF_ENTRY']
    - path: bactopia/SRX1390622/tools/blastp/logs/nf-blastp.sh
      contains: ['blastp', 'END_VERSIONS']
    - path: bactopia/SRX1390622/tools/blastp/logs/nf-blastp.trace
      contains: ['nextflow.trace']
    - path: bactopia/SRX1390622/tools/blastp/logs/versions.yml
      md5sum: e05afd6a41f0da42f1986bc55cc3be16
