- name: panaroo-bactopia_help
  command: bash -c 'nextflow run ./main.nf --wf panaroo -c nextflow.config --help > panaroo-help.txt'
  tags:
    - skip_panaroo
  files:
    - path: panaroo-help.txt
      contains: ['panaroo', 'bactopia', 'version', 'dependencies']
