Package: scran
Version: 1.28.1
Date: 2023-03-25
Title: Methods for Single-Cell RNA-Seq Data Analysis
Description: 
    Implements miscellaneous functions for interpretation of single-cell RNA-seq data.
    Methods are provided for assignment of cell cycle phase, detection of highly
    variable and significantly correlated genes, identification of marker genes,
    and other common tasks in routine single-cell analysis workflows.
Authors@R: 
    c(person("Aaron", "Lun", role = c("aut", "cre"), email = "infinite.monkeys.with.keyboards@gmail.com"), 
    person("Karsten", "Bach", role = "aut"),
    person("Jong Kyoung", "Kim", role = "ctb"), 
    person("Antonio", "Scialdone", role="ctb"))
Depends: SingleCellExperiment, scuttle
Imports: SummarizedExperiment, S4Vectors, BiocGenerics, BiocParallel,
        Rcpp, stats, methods, utils, Matrix, edgeR, limma, igraph,
        statmod, DelayedArray, DelayedMatrixStats, BiocSingular,
        bluster, metapod, dqrng, beachmat
Suggests: testthat, BiocStyle, knitr, rmarkdown, HDF5Array, scRNAseq,
        dynamicTreeCut, ResidualMatrix, ScaledMatrix, DESeq2, monocle,
        Biobase, pheatmap, scater
biocViews: ImmunoOncology, Normalization, Sequencing, RNASeq, Software,
        GeneExpression, Transcriptomics, SingleCell, Clustering
LinkingTo: Rcpp, beachmat, BH, dqrng, scuttle
License: GPL-3
NeedsCompilation: yes
VignetteBuilder: knitr
SystemRequirements: C++11
RoxygenNote: 7.1.2
git_url: https://git.bioconductor.org/packages/scran
git_branch: RELEASE_3_17
git_last_commit: bc9ffff
git_last_commit_date: 2023-05-01
Date/Publication: 2023-05-02
Packaged: 2023-05-02 22:22:30 UTC; biocbuild
Author: Aaron Lun [aut, cre],
  Karsten Bach [aut],
  Jong Kyoung Kim [ctb],
  Antonio Scialdone [ctb]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards@gmail.com>
Built: R 4.3.1; aarch64-conda-linux-gnu; 2023-08-24 18:37:23 UTC; unix
