==========================MPL=================================================
Inferred Network #1:
(1:1.0,((((2:1.0,(4:1.0,6:1.0):0.5745418868229112):0.836566984410819,(5:1.0)#H1:1.0::0.940732692938983):2.2916146136988855,#H1:1.0::0.059267307061017016):0.8776623951631757,3:1.0):5.909315396052653);
Total log probability: -1720685.656370276
Inferred Network #2:
(1:1.0,(3:1.0,(((2:1.0,(4:1.0)#H1:1.0::0.5141148318420835):0.09662663772290415,(6:1.0,#H1:1.0::0.4858851681579165):2.873496309353136):0.8758640240792457,5:1.0):2.818461519773154):5.909331093499034);
Total log probability: -1720702.4172408672
Inferred Network #3:
(1:1.0,(3:1.0,((((4:1.0,(6:1.0)#H1:1.0::0.9605302143289504):0.0011774181844964955,#H1:1.0::0.03946978567104964):0.5732385340312434,2:1.0):0.903692338667797,5:1.0):2.818307973126727):5.909906961363198);
Total log probability: -1722134.4158537118
Inferred Network #4:
(1:1.0,(3:1.0,(5:1.0,((((4:1.0)#H1:1.0::0.052677180649890944,6:1.0):4.188357014087819,#H1:1.0::0.9473228193501091):0.521347761537235,2:1.0):0.9026034294404688):2.818542072969931):5.909326285617517);
Total log probability: -1722136.0591201608
Inferred Network #5:
((3:1.0,(5:1.0,((4:1.0,6:1.0):0.5780404592084017,2:1.0):0.8996513130091536):2.8191227867453774):5.909316921931853,1:1.0);
Total log probability: -1722138.8630661874
java -jar $PHYLONET PhyloNetv3_8_2.jar dog_rooted.nex  281.25s user 75.16s system 354% cpu 1:40.56 total

==========================ML==================================================
Inferred Network #1:
(1:1.6101210673311783,(3:3.098659596612107,((5:0.06861236708130897)#H1:0.38708669395167933::0.748622919326696,(2:3.9986647804844644,(#H1:0.8103263495430857::0.25137708067330405,(4:2.936141610506084,6:0.5582715925453998):0.3935145303756744):0.08298883848855856):2.0660671784296514):2.678281274906509):3.7168919379799035);
Total log probability: -1012888.5690079957Running time:7.97665
java -jar $PHYLONET PhyloNetv3_8_2.jar dog_rooted.nex  2723.99s user 142.74s system 577% cpu 8:16.80 total