# /home/diego/mi_soft/bin/mutualinfo_matrix_NEWCLUSTER_pseudocount_zscore_row_w -fsa simple.fasta -lc 0 -c -apc -seed 42
# Sun Sep  6 17:38:54 2015
# User: root
# PWD : unknown
# Host: Linux SIRRAH 3.19.0-26-generic x86_64
# -fsa     1                    Input is fasta format
# -lc      0.000000             Low count value
# -c       0                    Sequence clustering [default on]
# -apc     0                    Use APC correction [default on]
# -seed    42                   Seed for random number [=0 time, <0 Default]
# Command line parameters set to:
#	[-c]                 0                    Sequence clustering [default on]
#	[-t float]           0.000000             Threshold
#	[-i float]           0.620000             Percent id for clustering
#	[-xg]                1                    Exclude gaps from statistics [default on]
#	[-lc float]          0.000000             Low count value
#	[-a string]          ACDEFGHIKLMNPQRSTVWYX- Aminoacid alphabet
#	[-v]                 0                    Verbose mode
#	[-ns int]            100                  Number of samples for Z-score
#	[-seed int]          42                   Seed for random number [=0 time, <0 Default]
#	[-fsa]               1                    Input is fasta format
#	[-fixg]              1                    Fixed gaps [default on]
#	[-apc]               0                    Use APC correction [default on]
#	[-maxgap float]      0.500000             Max fraction of gaps in positions included in calculation
#	[-pw]                0                    Print weight on each PIR
#	[-o int]             0                    Offset for residue enumeration
# Number of FASTA entries read 2 from file simple.fasta
# Threshold 0.000000
# Amino acid alphabet ACDEFGHIKLMNPQRSTVWYX-
# Nprot 2. Maxlen 2
# Len 2
# Nuse 2
# Ncluster 2.000000
MI[ 1 A ][ 2 R ] = 0.693147 0.339642 0.346504 1.020203
