 Count  Overhead File                                                                                                      Line Function
 =====  ======== ====                                                                                                      ==== ========
   274       274 @Base/Base.jl                                                                                               33 getproperty
  9260         0 @Base/Base.jl                                                                                              368 include(::Module, ::String)
  9260         0 @Base/Base.jl                                                                                              380 include(::Function, ::Module, ::String)
     5         5 @Base/Base.jl                                                                                               34 setproperty!
    26        26 @Base/Base.jl                                                                                               34 setproperty!(::Progress, ::Symbol, ::Int64)
    26        26 @Base/Base.jl                                                                                               65 time_ns
     6         6 @Base/Base.jl                                                                                                ? unsafe_write(::Base.GenericIOBuffer{Array{UInt8,1}}, ::Ptr{UInt8}, ::UInt64)
   267         0 @Base/abstractarray.jl                                                                                    1083 _getindex
    27         0 @Base/abstractarray.jl                                                                                    1183 _setindex!
    68         0 @Base/abstractarray.jl                                                                                    1879 _sub2ind
    23         0 @Base/abstractarray.jl                                                                                    1895 _sub2ind
    23         0 @Base/abstractarray.jl                                                                                    1911 _sub2ind_recurse
    68         0 @Base/abstractarray.jl                                                                                    1089 _to_linear_index
    38         0 @Base/abstractarray.jl                                                                                      57 axes
   179         0 @Base/abstractarray.jl                                                                                      75 axes
    92         0 @Base/abstractarray.jl                                                                                      95 axes1
     3         0 @Base/abstractarray.jl                                                                                     485 checkbounds
   103       100 @Base/abstractarray.jl                                                                                     506 checkbounds
     3         0 @Base/abstractarray.jl                                                                                     532 checkbounds_indices
     3         0 @Base/abstractarray.jl                                                                                     563 checkindex
    37         0 @Base/abstractarray.jl                                                                                     840 copyto!
    53         0 @Base/abstractarray.jl                                                                                     840 copyto!(::SubArray{Union{Missing, UInt8},2,Array{Union{Missing, UInt8},2},Tuple{Array{Union{Nothing, Int64},1},Base.Slice{Base.OneTo{Int64}}},false}, ::Array{Union{Missing, UInt8},2})
    37         2 @Base/abstractarray.jl                                                                                     860 copyto_unaliased!(::IndexLinear, ::SubArray{Float32,2,Array{Float32,2},Tuple{Base.Slice{Base.OneTo{Int64}},UnitRange{Int64}},true}, ::IndexLinear, ::BitArray{2})
     2         0 @Base/abstractarray.jl                                                                                     878 copyto_unaliased!(::IndexCartesian, ::SubArray{Union{Missing, UInt8},2,Array{Union{Missing, UInt8},2},Tuple{Array{Union{Nothing, Int64},1},Base.Slice{Base.OneTo{Int64}}},false}, ::IndexLinear, ::Array{Union{Missing, UInt8},2})
    27         0 @Base/abstractarray.jl                                                                                     881 copyto_unaliased!(::IndexCartesian, ::SubArray{Union{Missing, UInt8},2,Array{Union{Missing, UInt8},2},Tuple{Array{Union{Nothing, Int64},1},Base.Slice{Base.OneTo{Int64}}},false}, ::IndexLinear, ::Array{Union{Missing, UInt8},2})
    14         0 @Base/abstractarray.jl                                                                                     882 copyto_unaliased!(::IndexCartesian, ::SubArray{Union{Missing, UInt8},2,Array{Union{Missing, UInt8},2},Tuple{Array{Union{Nothing, Int64},1},Base.Slice{Base.OneTo{Int64}}},false}, ::IndexLinear, ::Array{Union{Missing, UInt8},2})
    92         0 @Base/abstractarray.jl                                                                                     267 eachindex
   414         0 @Base/abstractarray.jl                                                                                    1060 getindex
    92         0 @Base/abstractarray.jl                                                                                     302 lastindex
    15         0 @Base/abstractarray.jl                                                                                    1918 offsetin
     1         0 @Base/abstractarray.jl                                                                                    1009 pointer
    27         0 @Base/abstractarray.jl                                                                                    1153 setindex!
    92         0 @Base/abstractarray.jl                                                                                     630 similar
     1         0 @Base/abstractarray.jl                                                                                     674 similar
     1         0 @Base/abstractarray.jl                                                                                     675 similar
    40         1 @Base/abstractdict.jl                                                                                      502 get!
     1         0 @Base/array.jl                                                                                             678 _array_for
     1         1 @Base/array.jl                                                                                             329 _copyto_impl!(::Array{UInt8,1}, ::Int64, ::Array{UInt8,1}, ::Int64, ::Int64)
    14         0 @Base/array.jl                                                                                             335 _copyto_impl!(::Array{UInt8,1}, ::Int64, ::Array{UInt8,1}, ::Int64, ::Int64)
    12        12 @Base/array.jl                                                                                             903 _deleteat!
     2         1 @Base/array.jl                                                                                             901 _deleteend!
  2079      2079 @Base/array.jl                                                                                             892 _growend!
     4         4 @Base/array.jl                                                                                               ? _range
   140       140 @Base/array.jl                                                                                               ? checked_trunc_sint
     3         3 @Base/array.jl                                                                                               ? collect(::Base.Generator{Array{UnitRange{Int64},1},GeneticVariation.VCF.var"#4#5"{GeneticVariation.VCF.Record}})
    28         0 @Base/array.jl                                                                                             686 collect(::Base.Generator{Array{Any,1},typeof(Pkg.TOML.table2dict)})
   391         0 @Base/array.jl                                                                                             691 collect(::Base.Generator{UnitRange{Int64},MendelImpute.var"#9#12"{Int64}})
   390         0 @Base/array.jl                                                                                             732 collect_to!(::Array{Array{Int32,1},1}, ::Base.Generator{UnitRange{Int64},MendelImpute.var"#9#12"{Int64}}, ::Int64, ::Int64)
   390         0 @Base/array.jl                                                                                             710 collect_to_with_first!
    14         0 @Base/array.jl                                                                                             326 copyto!
    12         0 @Base/array.jl                                                                                            1310 deleteat!
     2         0 @Base/array.jl                                                                                            1528 empty!
   185         0 @Base/array.jl                                                                                             357 fill!
     1         0 @Base/array.jl                                                                                            1861 findfirst
     1         0 @Base/array.jl                                                                                            1810 findnext
   107       107 @Base/array.jl                                                                                               ? getindex
  1011         0 @Base/array.jl                                                                                             413 getindex
 91806     91806 @Base/array.jl                                                                                             809 getindex
   475       475 @Base/array.jl                                                                                             810 getindex
    11         0 @Base/array.jl                                                                                             817 getindex
     1         1 @Base/array.jl                                                                                               ? handle_deserialize(::Serialization.Serializer{TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}}, ::Int32)
    40         0 @Base/array.jl                                                                                            2337 indexin(::Array{Int64,1}, ::Array{Int64,1})
     1         0 @Base/array.jl                                                                                            2339 indexin(::Array{Int64,1}, ::Array{Int64,1})
     1         1 @Base/array.jl                                                                                               ? iterate
    83         0 @Base/array.jl                                                                                             785 iterate
    47        47 @Base/array.jl                                                                                             219 length
    70        70 @Base/array.jl                                                                                               ? macro expansion
     1         1 @Base/array.jl                                                                                               ? phase_sample!(::Array{Int32,1}, ::Array{Int32,1}, ::MendelImpute.CompressedHaplotypes, ::Array{Int32,1}, ::Array{Int32,1})
  2077         0 @Base/array.jl                                                                                             935 push!
   179         0 @Base/array.jl                                                                                             936 push!
     1         1 @Base/array.jl                                                                                             937 push!
     1         1 @Base/array.jl                                                                                               ? rehash!(::Dict{Int32,Array{Int32,1}}, ::Int64)
     2         0 @Base/array.jl                                                                                            1085 resize!
     1         1 @Base/array.jl                                                                                               ? resize_and_copy!
   150       150 @Base/array.jl                                                                                               ? searchsortedlast
     2         2 @Base/array.jl                                                                                               ? setindex!
  1106       946 @Base/array.jl                                                                                             847 setindex!
     2         2 @Base/array.jl                                                                                             847 setindex!(::Array{String,1}, ::String, ::Int64)
  1856      1856 @Base/array.jl                                                                                             849 setindex!
    11         0 @Base/array.jl                                                                                             379 similar
    40        40 @Base/array.jl                                                                                             155 size
   165       165 @Base/array.jl                                                                                             245 unsafe_copyto!
    14        14 @Base/array.jl                                                                                             293 unsafe_copyto!
   441         0 @Base/array.jl                                                                                             521 zeros
   263         0 @Base/array.jl                                                                                             525 zeros
   178         0 @Base/array.jl                                                                                             526 zeros
   103         0 @Base/baseext.jl                                                                                            32 Array{Union{Missing, UInt8},2}(::Missing, ::Int64, ::Vararg{Int64,N} where N)
     2         2 @Base/bitarray.jl                                                                                           28 BitArray{1}(::UndefInitializer, ::Int64)
     2         0 @Base/bitarray.jl                                                                                           32 BitArray{1}(::UndefInitializer, ::Int64)
     1         0 @Base/bitarray.jl                                                                                           36 BitArray{1}(::UndefInitializer, ::Int64)
    88         0 @Base/bitarray.jl                                                                                           37 BitArray{1}(::UndefInitializer, ::Int64)
     5         0 @Base/bitarray.jl                                                                                           38 BitArray{1}(::UndefInitializer, ::Int64)
    10        10 @Base/bitarray.jl                                                                                           39 BitArray{1}(::UndefInitializer, ::Int64)
    92         0 @Base/bitarray.jl                                                                                           71 BitArray
   106         0 @Base/bitarray.jl                                                                                          119 _div64
     1         0 @Base/bitarray.jl                                                                                          154 copy_chunks!(::Array{UInt64,1}, ::Int64, ::Array{UInt64,1}, ::Int64, ::Int64)
    48         0 @Base/bitarray.jl                                                                                          166 copy_chunks!(::Array{UInt64,1}, ::Int64, ::Array{UInt64,1}, ::Int64, ::Int64)
     1         0 @Base/bitarray.jl                                                                                          168 copy_chunks!(::Array{UInt64,1}, ::Int64, ::Array{UInt64,1}, ::Int64, ::Int64)
   115         0 @Base/bitarray.jl                                                                                          126 get_chunks_id
   216         0 @Base/bitarray.jl                                                                                          668 getindex
    47         0 @Base/bitarray.jl                                                                                          130 glue_src_bitchunks
     1         0 @Base/bitarray.jl                                                                                          131 glue_src_bitchunks
     1         0 @Base/bitarray.jl                                                                                          124 num_bit_chunks
    92         0 @Base/bitarray.jl                                                                                          372 similar
     9         0 @Base/bitarray.jl                                                                                          105 size
     1         1 @Base/bitarray.jl                                                                                            ? unsafe_bitgetindex
   115         0 @Base/bitarray.jl                                                                                          660 unsafe_bitgetindex
     2         0 @Base/bitarray.jl                                                                                          661 unsafe_bitgetindex
    62         0 @Base/bitarray.jl                                                                                          662 unsafe_bitgetindex
    16         0 @Base/bitarray.jl                                                                                         1754 vcat(::BitArray{1}, ::BitArray{1})
     3         1 @Base/bitarray.jl                                                                                         1757 vcat(::BitArray{1}, ::BitArray{1})
    27        27 @Base/bool.jl                                                                                               40 &
    20         0 @Base/bool.jl                                                                                               96 +
   281       281 @Base/boot.jl                                                                                              406 Array{Int32,1}(::UndefInitializer, ::Int64)
  1165      1165 @Base/boot.jl                                                                                              406 Array
   297       297 @Base/boot.jl                                                                                              408 Array
    96        96 @Base/boot.jl                                                                                              408 Array{Union{Missing, UInt8},2}(::UndefInitializer, ::Int64, ::Int64)
    19         0 @Base/boot.jl                                                                                              415 Array{String,1}(::UndefInitializer, ::Tuple{Int64})
    32         0 @Base/boot.jl                                                                                              415 Array
   232         0 @Base/boot.jl                                                                                              416 Array
  1011         0 @Base/boot.jl                                                                                              425 Array
   145         0 @Base/boot.jl                                                                                              707 Int32
    30         0 @Base/boot.jl                                                                                              708 Int64
    28         0 @Base/boot.jl                                                                                              713 UInt64
     1         0 @Base/boot.jl                                                                                              710 UInt8
    29        25 @Base/boot.jl                                                                                              572 check_top_bit
     4         4 @Base/boot.jl                                                                                                ? checked_trunc_sint
     1         1 @Base/boot.jl                                                                                              588 checked_trunc_uint
     4         4 @Base/boot.jl                                                                                              562 is_top_bit_set
     1         1 @Base/boot.jl                                                                                                ? read!(::TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}, ::Array{Int32,1})
   144         0 @Base/boot.jl                                                                                              617 toInt32
     1         1 @Base/boot.jl                                                                                              619 toInt32
     1         1 @Base/boot.jl                                                                                              627 toInt64
     1         1 @Base/boot.jl                                                                                              630 toInt64
     1         0 @Base/boot.jl                                                                                              633 toInt64
    27        27 @Base/boot.jl                                                                                              635 toInt64
    28         0 @Base/boot.jl                                                                                              683 toUInt64
     1         0 @Base/boot.jl                                                                                              650 toUInt8
    11         0 @Base/broadcast.jl                                                                                        1072 broadcasted
    11         0 @Base/broadcast.jl                                                                                        1263 broadcasted
     2         0 @Base/c.jl                                                                                                 209 containsnul
     2         0 @Base/c.jl                                                                                                 216 unsafe_convert
    48         0 @Base/cartesian.jl                                                                                          64 macro expansion
    12         0 @Base/channels.jl                                                                                          447 iterate
  2336         0 @Base/channels.jl                                                                                          448 iterate(::Channel{Task}, ::Nothing)
200462         0 @Base/channels.jl                                                                                          312 put!
     1         0 @Base/channels.jl                                                                                          318 put_buffered(::Channel{Task}, ::Task)
200461         0 @Base/channels.jl                                                                                          320 put_buffered(::Channel{Task}, ::Task)
  2750         0 @Base/channels.jl                                                                                          381 take!
  2750         0 @Base/channels.jl                                                                                          387 take_buffered(::Channel{Task})
     5         5 @Base/checked.jl                                                                                           166 checked_add
     2         2 @Base/checked.jl                                                                                           223 checked_sub
  9260         0 @Base/client.jl                                                                                            506 _start()
  9260         0 @Base/client.jl                                                                                            296 exec_options(::Base.JLOptions)
     1         0 @Base/condition.jl                                                                                         124 #notify#483
     5         0 @Base/condition.jl                                                                                          73 lock
     1         0 @Base/condition.jl                                                                                         124 notify
     1         0 @Base/condition.jl                                                                                         129 notify(::Base.GenericCondition{Base.Threads.SpinLock}, ::Any, ::Bool, ::Bool)
     1         0 @Base/condition.jl                                                                                          74 unlock
203211         0 @Base/condition.jl                                                                                         106 wait(::Base.GenericCondition{ReentrantLock})
     1         0 @Base/dict.jl                                                                                              669 _iterate
     1         0 @Base/dict.jl                                                                                              356 _setindex!
     1         0 @Base/dict.jl                                                                                              365 _setindex!
    38         0 @Base/dict.jl                                                                                              367 _setindex!
    89         0 @Base/dict.jl                                                                                              490 get
    18         0 @Base/dict.jl                                                                                              491 get
     1         1 @Base/dict.jl                                                                                              444 get!(::Base.var"#142#143"{Int64}, ::Dict{Int64,Int64}, ::Int64)
     3         0 @Base/dict.jl                                                                                              445 get!(::Base.var"#142#143"{Int64}, ::Dict{Int64,Int64}, ::Int64)
    35         0 @Base/dict.jl                                                                                              459 get!(::Base.var"#142#143"{Int64}, ::Dict{Int64,Int64}, ::Int64)
     4         0 @Base/dict.jl                                                                                              168 hashindex
     6         6 @Base/dict.jl                                                                                                ? ht_keyindex(::Dict{Int32,Array{Int32,1}}, ::Int32)
    44         0 @Base/dict.jl                                                                                              279 ht_keyindex(::Dict{Int32,Array{Int32,1}}, ::Int32)
     1         0 @Base/dict.jl                                                                                              282 ht_keyindex(::Dict{Int32,Array{Int32,1}}, ::Int32)
    36        31 @Base/dict.jl                                                                                              286 ht_keyindex(::Dict{Int32,Array{Int32,1}}, ::Int32)
     1         0 @Base/dict.jl                                                                                              293 ht_keyindex(::Dict{Int64,Int64}, ::Int64)
     1         0 @Base/dict.jl                                                                                              294 ht_keyindex(::Dict{Int32,Array{Int32,1}}, ::Int32)
     2         0 @Base/dict.jl                                                                                              308 ht_keyindex2!(::Dict{Int32,Array{Int32,1}}, ::Int32)
     1         0 @Base/dict.jl                                                                                              313 ht_keyindex2!(::Dict{Int32,Array{Int32,1}}, ::Int32)
     1         1 @Base/dict.jl                                                                                              326 ht_keyindex2!(::Dict{Int64,Int64}, ::Int64)
     2         0 @Base/dict.jl                                                                                              330 ht_keyindex2!(::Dict{Int32,Array{Int32,1}}, ::Int32)
     6         0 @Base/dict.jl                                                                                              348 ht_keyindex2!(::Dict{Int32,Array{Int32,1}}, ::Int32)
     6         0 @Base/dict.jl                                                                                              170 isslotempty
     1         0 @Base/dict.jl                                                                                              671 iterate
     1         1 @Base/dict.jl                                                                                                ? rehash!(::Dict{Int32,Array{Int32,1}}, ::Int64)
     2         0 @Base/dict.jl                                                                                              185 rehash!(::Dict{Int32,Array{Int32,1}}, ::Int64)
    31         0 @Base/dict.jl                                                                                              191 rehash!(::Dict{Int64,Int64}, ::Int64)
     4         0 @Base/dict.jl                                                                                              193 rehash!(::Dict{Int32,Array{Int32,1}}, ::Int64)
     1         0 @Base/dict.jl                                                                                              201 rehash!(::Dict{Int32,Array{Int32,1}}, ::Int64)
     1         0 @Base/dict.jl                                                                                              202 rehash!(::Dict{Int32,Array{Int32,1}}, ::Int64)
     1         1 @Base/dict.jl                                                                                              203 rehash!(::Dict{Int32,Array{Int32,1}}, ::Int64)
     1         0 @Base/dict.jl                                                                                              209 rehash!(::Dict{Int64,Int64}, ::Int64)
     3         0 @Base/dict.jl                                                                                              210 rehash!(::Dict{Int32,Array{Int32,1}}, ::Int64)
     9         0 @Base/dict.jl                                                                                              381 setindex!(::Dict{Int32,Array{Int32,1}}, ::Array{Int32,1}, ::Int32)
     5         0 @Base/dict.jl                                                                                              388 setindex!(::Dict{Int32,Array{Int32,1}}, ::Array{Int32,1}, ::Int32)
     2         0 @Base/dict.jl                                                                                              242 sizehint!
     5         3 @Base/env.jl                                                                                                38 _getenv(::String)
     5         0 @Base/env.jl                                                                                                42 access_env
     5         0 @Base/env.jl                                                                                                80 get
     4         0 @Base/essentials.jl                                                                                        388 cconvert
     7         7 @Base/float.jl                                                                                             455 !=
   156       156 @Base/float.jl                                                                                             404 *
   768       768 @Base/float.jl                                                                                             400 +
     2         2 @Base/float.jl                                                                                             401 +
129986    129986 @Base/float.jl                                                                                             402 -
 28335     28335 @Base/float.jl                                                                                             457 <
   331       331 @Base/float.jl                                                                                              66 Float32
     2         0 @Base/float.jl                                                                                             572 hash
     2         0 @Base/float.jl                                                                                             575 hash
     2         0 @Base/float.jl                                                                                             568 hx
     5         0 @Base/float.jl                                                                                             564 isinf
     7         0 @Base/float.jl                                                                                             536 isnan
   418         0 @Base/generator.jl                                                                                          47 iterate
     3         0 @Base/hashing.jl                                                                                            18 hash
     1         0 @Base/hashing.jl                                                                                            29 hash_64_64
     1         0 @Base/hashing.jl                                                                                            35 hash_64_64
     2         0 @Base/hashing.jl                                                                                            62 hash_uint64
     2         2 @Base/iddict.jl                                                                                             87 get
     2         0 @Base/iddict.jl                                                                                            142 get
     1         1 @Base/iddict.jl                                                                                             71 setindex!(::IdDict{Any,Any}, ::Any, ::Any)
  1254      1254 @Base/iddict.jl                                                                                             81 setindex!(::IdDict{Any,Any}, ::Any, ::Any)
     1         0 @Base/iddict.jl                                                                                             82 setindex!(::IdDict{Any,Any}, ::Any, ::Any)
     7         0 @Base/indices.jl                                                                                           483 iterate
     4         0 @Base/indices.jl                                                                                           321 to_indices
     1         1 @Base/int.jl                                                                                                 ? &
    30        30 @Base/int.jl                                                                                               308 &
     8         8 @Base/int.jl                                                                                                87 *
 27550     27550 @Base/int.jl                                                                                                86 +
    27         0 @Base/int.jl                                                                                               920 +
     6         0 @Base/int.jl                                                                                               922 +
   356       356 @Base/int.jl                                                                                                85 -
     1         0 @Base/int.jl                                                                                               922 -
  1020      1020 @Base/int.jl                                                                                                 ? <
  3142      3142 @Base/int.jl                                                                                                82 <
    11        11 @Base/int.jl                                                                                               440 <
    29         0 @Base/int.jl                                                                                               447 <
     2         2 @Base/int.jl                                                                                               456 <<
     2         0 @Base/int.jl                                                                                               463 <<
     2         2 @Base/int.jl                                                                                                 ? <=
   764       764 @Base/int.jl                                                                                               441 <=
   315         0 @Base/int.jl                                                                                               445 ==
   106       106 @Base/int.jl                                                                                               454 >>
     1         1 @Base/int.jl                                                                                               455 >>
   107         0 @Base/int.jl                                                                                               461 >>
    84        84 @Base/int.jl                                                                                               457 >>>
     7         7 @Base/int.jl                                                                                                 ? copyto_unaliased!(::IndexCartesian, ::SubArray{Union{Missing, UInt8},2,Array{Union{Missing, UInt8},2},Tuple{Array{Union{Nothing, Int64},1},Base.Slice{Base.OneTo{Int64}}},false}, ::IndexLinear, ::Array{Union{Missing, UInt8},2})
     1         1 @Base/int.jl                                                                                               384 leading_zeros
    27         0 @Base/int.jl                                                                                               473 rem
     2         0 @Base/intfuncs.jl                                                                                          600 #ndigits#335
     1         1 @Base/intfuncs.jl                                                                                          694 string(::Int64; base::Int64, pad::Int64)
     6         0 @Base/intfuncs.jl                                                                                          702 string(::Int64; base::Int64, pad::Int64)
     1         0 @Base/intfuncs.jl                                                                                          466 bit_ndigits0z
     1         0 @Base/intfuncs.jl                                                                                          468 bit_ndigits0z
     2         0 @Base/intfuncs.jl                                                                                          629 dec(::UInt64, ::Int64, ::Bool)
     5         0 @Base/intfuncs.jl                                                                                          630 dec(::UInt64, ::Int64, ::Bool)
     2         0 @Base/intfuncs.jl                                                                                          600 ndigits##kw
     2         0 @Base/intfuncs.jl                                                                                          572 ndigits0z
     2         0 @Base/intfuncs.jl                                                                                          514 ndigits0zpb(::UInt64, ::Int64)
     7         0 @Base/intfuncs.jl                                                                                          694 string
   619         0 @Base/io.jl                                                                                               1126 countlines(::TranscodingStreams.TranscodingStream{GzipDecompressor,IOStream}; eol::Char)
    16         0 @Base/io.jl                                                                                               1127 countlines(::TranscodingStreams.TranscodingStream{GzipDecompressor,IOStream}; eol::Char)
    51         0 @Base/io.jl                                                                                               1128 countlines(::TranscodingStreams.TranscodingStream{GzipDecompressor,IOStream}; eol::Char)
     2         0 @Base/io.jl                                                                                                325 open(::JLSO.var"#31#32"{Tuple{}}, ::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}})
   686         0 @Base/io.jl                                                                                               1122 countlines(::TranscodingStreams.TranscodingStream{GzipDecompressor,IOStream})
    43         0 @Base/io.jl                                                                                               1129 macro expansion
     2         0 @Base/io.jl                                                                                                323 open
    15         0 @Base/io.jl                                                                                                703 read
     8         0 @Base/io.jl                                                                                                699 read!
    28         0 @Base/io.jl                                                                                                710 read!(::Base.GenericIOBuffer{Array{UInt8,1}}, ::Array{UInt8,1})
  1073         0 @Base/io.jl                                                                                                716 read!(::TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}, ::Array{Int32,1})
     8         0 @Base/io.jl                                                                                                697 unsafe_read(::TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}, ::Base.RefValue{Int32}, ::Int64)
  1140         0 @Base/io.jl                                                                                                698 unsafe_read
  3356         0 @Base/io.jl                                                                                                622 unsafe_write
  3356         0 @Base/io.jl                                                                                                645 write(::TranscodingStreams.TranscodingStream{GzipCompressor,IOStream}, ::Array{UInt8,1})
   113         0 @Base/iobuffer.jl                                                                                           31 StringVector
    67         7 @Base/iobuffer.jl                                                                                          324 ensureroom
    68        29 @Base/iobuffer.jl                                                                                          327 ensureroom
    21         0 @Base/iobuffer.jl                                                                                          328 ensureroom
     2         0 @Base/iobuffer.jl                                                                                          329 ensureroom
   108         0 @Base/iobuffer.jl                                                                                          398 take!(::Base.GenericIOBuffer{Array{UInt8,1}})
    28         0 @Base/iobuffer.jl                                                                                          399 take!(::Base.GenericIOBuffer{Array{UInt8,1}})
    38         0 @Base/iobuffer.jl                                                                                          167 unsafe_read
   120       120 @Base/iobuffer.jl                                                                                          418 unsafe_write(::Base.GenericIOBuffer{Array{UInt8,1}}, ::Ptr{UInt8}, ::UInt64)
   158         0 @Base/iobuffer.jl                                                                                          419 unsafe_write(::Base.GenericIOBuffer{Array{UInt8,1}}, ::Ptr{UInt8}, ::UInt64)
    22         5 @Base/iobuffer.jl                                                                                          420 unsafe_write(::Base.GenericIOBuffer{Array{UInt8,1}}, ::Ptr{UInt8}, ::UInt64)
    25         0 @Base/iobuffer.jl                                                                                          421 unsafe_write(::Base.GenericIOBuffer{Array{UInt8,1}}, ::Ptr{UInt8}, ::UInt64)
    82        22 @Base/iobuffer.jl                                                                                          424 unsafe_write(::Base.GenericIOBuffer{Array{UInt8,1}}, ::Ptr{UInt8}, ::UInt64)
    34         0 @Base/iobuffer.jl                                                                                          425 unsafe_write(::Base.GenericIOBuffer{Array{UInt8,1}}, ::Ptr{UInt8}, ::UInt64)
    46         0 @Base/iobuffer.jl                                                                                          426 unsafe_write(::Base.GenericIOBuffer{Array{UInt8,1}}, ::Ptr{UInt8}, ::UInt64)
     1         0 @Base/iobuffer.jl                                                                                          427 unsafe_write(::Base.GenericIOBuffer{Array{UInt8,1}}, ::Ptr{UInt8}, ::UInt64)
    24         0 @Base/iobuffer.jl                                                                                          430 unsafe_write(::Base.GenericIOBuffer{Array{UInt8,1}}, ::Ptr{UInt8}, ::UInt64)
    22        22 @Base/iobuffer.jl                                                                                          431 unsafe_write(::Base.GenericIOBuffer{Array{UInt8,1}}, ::Ptr{UInt8}, ::UInt64)
    36        36 @Base/iobuffer.jl                                                                                          434 unsafe_write(::Base.GenericIOBuffer{Array{UInt8,1}}, ::Ptr{UInt8}, ::UInt64)
     1         1 @Base/iostream.jl                                                                                          284 open(::String; lock::Bool, read::Nothing, write::Nothing, create::Nothing, truncate::Bool, append::Nothing)
     1         0 @Base/iostream.jl                                                                                          346 open(::String, ::String; lock::Bool)
     1         0 @Base/iostream.jl                                                                                          521 read(::IOStream, ::Int32; all::Bool)
     1         0 @Base/iostream.jl                                                                                          485 #readbytes!#546
     5         5 @Base/iostream.jl                                                                                          222 _eof_nolock
     1         1 @Base/iostream.jl                                                                                           42 bytesavailable
     5         0 @Base/iostream.jl                                                                                           43 eof
     1         0 @Base/iostream.jl                                                                                          346 open
     1         0 @Base/iostream.jl                                                                                          273 open##kw
     1         0 @Base/iostream.jl                                                                                          520 read
     1         0 @Base/iostream.jl                                                                                          485 readbytes!##kw
     1         1 @Base/iostream.jl                                                                                          444 readbytes_all!(::IOStream, ::Array{UInt8,1}, ::Int32)
     1         0 @Base/iostream.jl                                                                                           42 unsafe_read
     1         1 @Base/iostream.jl                                                                                           43 unsafe_read
     2         0 @Base/iostream.jl                                                                                           44 unsafe_read
     3         3 @Base/iostream.jl                                                                                           43 unsafe_write(::IOStream, ::Ptr{UInt8}, ::UInt64)
     1         0 @Base/iostream.jl                                                                                           44 unsafe_write(::IOStream, ::Ptr{UInt8}, ::UInt64)
     1         0 @Base/iterators.jl                                                                                         139 iterate
     6         6 @Base/libc.jl                                                                                              247 time
     1         1 @Base/libuv.jl                                                                                             104 process_events
     1         0 @Base/linked_list.jl                                                                                        95 list_deletefirst!(::Base.InvasiveLinkedList{Task}, ::Task)
     1         0 @Base/linked_list.jl                                                                                        86 popfirst!
     2         2 @Base/lock.jl                                                                                               67 lock(::ReentrantLock)
     3         0 @Base/lock.jl                                                                                               69 lock(::ReentrantLock)
     1         0 @Base/lock.jl                                                                                               86 lock(::ReentrantLock)
     1         1 @Base/lock.jl                                                                                              158 lock(::ProgressMeter.var"#13#14"{Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}},Progress}, ::ReentrantLock)
     5         0 @Base/lock.jl                                                                                              159 lock(::ProgressMeter.var"#13#14"{Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}},Progress}, ::ReentrantLock)
     2         2 @Base/lock.jl                                                                                              160 lock(::ProgressMeter.var"#13#14"{Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}},Progress}, ::ReentrantLock)
    62         1 @Base/lock.jl                                                                                              161 lock(::ProgressMeter.var"#13#14"{Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}},Progress}, ::ReentrantLock)
     4         0 @Base/lock.jl                                                                                              163 lock(::ProgressMeter.var"#13#14"{Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}},Progress}, ::ReentrantLock)
     1         1 @Base/lock.jl                                                                                               98 unlock(::ReentrantLock)
     4         0 @Base/lock.jl                                                                                              102 unlock(::ReentrantLock)
     1         0 @Base/lock.jl                                                                                              115 unlock(::ReentrantLock)
     1         1 @Base/locks-mt.jl                                                                                           50 _set!
     2         2 @Base/locks-mt.jl                                                                                           61 lock(::Base.Threads.SpinLock)
     4         0 @Base/locks-mt.jl                                                                                           65 lock(::Base.Threads.SpinLock)
     1         0 @Base/locks-mt.jl                                                                                           83 unlock
     2         2 @Base/logging.jl                                                                                           394 current_logger_for_env(::Base.CoreLogging.LogLevel, ::Symbol, ::Module)
     2         0 @Base/logging.jl                                                                                           395 current_logger_for_env(::Base.CoreLogging.LogLevel, ::Symbol, ::Module)
     5         0 @Base/logging.jl                                                                                           396 current_logger_for_env(::Base.CoreLogging.LogLevel, ::Symbol, ::Module)
     2         0 @Base/logging.jl                                                                                           389 current_logstate
     1         1 @Base/logging.jl                                                                                           431 env_override_minlevel(::Symbol, ::Module)
     5         0 @Base/logging.jl                                                                                           432 env_override_minlevel(::Symbol, ::Module)
     1         1 @Base/logging.jl                                                                                             ? macro expansion
     8         0 @Base/logging.jl                                                                                           322 macro expansion
     3         0 @Base/multidimensional.jl                                                                                  373 __inc
   143         0 @Base/multidimensional.jl                                                                                  743 _getindex
     1         1 @Base/multidimensional.jl                                                                                  752 _unsafe_getindex(::IndexLinear, ::BitArray{2}, ::Base.Slice{Base.OneTo{Int64}}, ::Int64)
    92         0 @Base/multidimensional.jl                                                                                  755 _unsafe_getindex(::IndexLinear, ::BitArray{2}, ::Base.Slice{Base.OneTo{Int64}}, ::Int64)
    50         0 @Base/multidimensional.jl                                                                                  757 _unsafe_getindex(::IndexLinear, ::BitArray{2}, ::Base.Slice{Base.OneTo{Int64}}, ::Int64)
    50         0 @Base/multidimensional.jl                                                                                 1114 _unsafe_getindex!
     3         3 @Base/multidimensional.jl                                                                                    ? copyto_unaliased!(::IndexCartesian, ::SubArray{Union{Missing, UInt8},2,Array{Union{Missing, UInt8},2},Tuple{Array{Union{Nothing, Int64},1},Base.Slice{Base.OneTo{Int64}}},false}, ::IndexLinear, ::Array{Union{Missing, UInt8},2})
    74         0 @Base/multidimensional.jl                                                                                  557 getindex
     2         2 @Base/multidimensional.jl                                                                                  349 iterate
     3         0 @Base/multidimensional.jl                                                                                  354 iterate
     6         6 @Base/multidimensional.jl                                                                                  355 iterate
     2         0 @Base/multidimensional.jl                                                                                 1138 macro expansion
    48         0 @Base/multidimensional.jl                                                                                 1139 macro expansion
    48         0 @Base/multidimensional.jl                                                                                 1143 macro expansion
     6         0 none                                                                                                         ? (::GeneticVariation.VCF.var"#2#3"{GeneticVariation.VCF.Record})(::UnitRange{Int64})
     1         0 none                                                                                                         ? (::GeneticVariation.VCF.var"#4#5"{GeneticVariation.VCF.Record})(::UnitRange{Int64})
     1         0 none                                                                                                         ? #43
   339         0 none                                                                                                         ? #55
    69         0 none                                                                                                         ? #56
     1         0 none                                                                                                         ? #9
     3         0 @Base/number.jl                                                                                            133 abs2
   531         0 @Base/number.jl                                                                                              7 convert
    39         0 @Base/operators.jl                                                                                         202 !=
   703         0 @Base/operators.jl                                                                                         538 +
     2         2 @Base/operators.jl                                                                                           ? ==
     2         2 @Base/operators.jl                                                                                          83 ==
  3920         0 @Base/operators.jl                                                                                         303 >
     5         0 @Base/operators.jl                                                                                         350 >=
     3         0 @Base/operators.jl                                                                                        1058 in
     3         3 @Base/operators.jl                                                                                        1061 in
   107         0 @Base/operators.jl                                                                                         355 isless
   107         0 @Base/ordering.jl                                                                                           57 lt
     1         1 @Base/pair.jl                                                                                               12 Pair
     2         0 @Base/parse.jl                                                                                             238 parse(::Type{Int64}, ::String; base::Nothing)
     2         0 @Base/parse.jl                                                                                             238 parse
     1         0 @Base/parse.jl                                                                                             127 tryparse_internal(::Type{Int64}, ::String, ::Int64, ::Int64, ::Int64, ::Bool)
     1         0 @Base/parse.jl                                                                                             136 tryparse_internal(::Type{Int64}, ::String, ::Int64, ::Int64, ::Int64, ::Bool)
     2         2 @Base/pointer.jl                                                                                           159 +
    42        42 @Base/pointer.jl                                                                                           105 unsafe_load
   153         0 @Base/promotion.jl                                                                                         312 *
   278         0 @Base/promotion.jl                                                                                         348 ==
  5905      5905 @Base/promotion.jl                                                                                         398 ==
    24         0 @Base/promotion.jl                                                                                         259 _promote
     3         3 @Base/promotion.jl                                                                                           ? haplopair!(::Array{Int32,1}, ::Array{Int32,1}, ::Array{Float32,1}, ::SubArray{Float32,2,Array{Float32,2},Tuple{UnitRange{Int64},UnitRange{Int64}},false}, ::SubArray{Float32,2,Array{Float32,2},Tuple{Base.Slice{Base.OneTo{Int64}},UnitRange{Int64}},true})
   131       130 @Base/promotion.jl                                                                                         409 max
    26         0 @Base/promotion.jl                                                                                         359 min
     3         2 @Base/promotion.jl                                                                                         410 min
    24         0 @Base/promotion.jl                                                                                         282 promote
     4         0 @Base/range.jl                                                                                              91 #range#43
     4         0 @Base/range.jl                                                                                               5 Colon
   130         0 @Base/range.jl                                                                                             317 OneTo
   130         0 @Base/range.jl                                                                                             326 OneTo
     4         0 @Base/range.jl                                                                                             280 UnitRange
     6         6 @Base/range.jl                                                                                             631 _in_unit_range
     1         1 @Base/range.jl                                                                                               ? getindex
   484         0 @Base/range.jl                                                                                             645 getindex
    12         6 @Base/range.jl                                                                                             646 getindex
     9         0 @Base/range.jl                                                                                            1042 in
  1021         0 @Base/range.jl                                                                                             503 isempty
  1303       282 @Base/range.jl                                                                                             620 iterate
  5524       359 @Base/range.jl                                                                                             624 iterate
     7         0 @Base/range.jl                                                                                             570 length
     4         0 @Base/range.jl                                                                                              91 range##kw
     4         0 @Base/range.jl                                                                                             285 unitrange_last
     4         4 @Base/reduce.jl                                                                                              ? _any
     7         0 @Base/reduce.jl                                                                                            781 _any
    27        27 @Base/reduce.jl                                                                                            784 _any
    19         0 @Base/reduce.jl                                                                                            785 _any
    57         0 @Base/reducedim.jl                                                                                         729 #any#636
    57         0 @Base/reducedim.jl                                                                                         729 any
     7         0 @Base/refpointer.jl                                                                                         96 Ref
     7         7 @Base/refvalue.jl                                                                                            8 RefValue
    13        13 @Base/simdloop.jl                                                                                            ? macro expansion
    26         1 @Base/simdloop.jl                                                                                           75 macro expansion
    72         0 @Base/simdloop.jl                                                                                           76 macro expansion
   300         0 @Base/simdloop.jl                                                                                           77 macro expansion
    12         0 @Base/simdloop.jl                                                                                           78 macro expansion
    72         0 @Base/simdloop.jl                                                                                           54 simd_index
   985         0 @Base/sort.jl                                                                                              326 #searchsortedlast#5
   438         0 @Base/sort.jl                                                                                              169 midpoint
    10         0 @Base/sort.jl                                                                                              197 searchsortedlast
   217         0 @Base/sort.jl                                                                                              198 searchsortedlast
   438         0 @Base/sort.jl                                                                                              199 searchsortedlast
   132         0 @Base/sort.jl                                                                                              200 searchsortedlast
   985         0 @Base/sort.jl                                                                                              324 searchsortedlast
   985         0 @Base/sort.jl                                                                                              326 searchsortedlast
    18         0 @Base/strings/io.jl                                                                                         46 print(::Base.GenericIOBuffer{Array{UInt8,1}}, ::String, ::String, ::Vararg{String,N} where N)
     1         1 @Base/strings/io.jl                                                                                         51 print(::Base.GenericIOBuffer{Array{UInt8,1}}, ::String, ::String, ::Vararg{String,N} where N)
   572         0 @Base/strings/io.jl                                                                                        185 print
   572        29 @Base/strings/io.jl                                                                                        183 write
     1         0 @Base/strings/string.jl                                                                                    108 ==(::String, ::String)
     4         4 @Base/strings/string.jl                                                                                     39 String
    16        16 @Base/strings/string.jl                                                                                     60 _string_n
    42        42 @Base/strings/string.jl                                                                                     85 sizeof
    97        97 @Base/strings/string.jl                                                                                     71 unsafe_wrap
   101         0 @Base/subarray.jl                                                                                          256 getindex
   995         0 @Base/subarray.jl                                                                                          257 getindex
    89         0 @Base/subarray.jl                                                                                          276 getindex
     1         0 @Base/subarray.jl                                                                                          284 getindex
   489         0 @Base/subarray.jl                                                                                          235 reindex
     2         0 @Base/subarray.jl                                                                                          297 setindex!
  1745         5 @Base/subarray.jl                                                                                          298 setindex!
   118         0 @Base/subarray.jl                                                                                          310 setindex!
202800         0 @Base/task.jl                                                                                              356 (::ThreadPools.var"#56#58"{typeof(ThreadPools._default_handler),ThreadPools.QueuePool})()
     1         0 @Base/task.jl                                                                                              356 (::ThreadPools.var"#64#66"{ThreadPools.QueuePool,Array{Int64,1},ThreadPools.var"#63#65"{MendelImpute.var"#32#37"{Array{HaplotypeMosaicPair,1},Array{Union{Missing, UInt8},2},MendelImpute.CompressedHaplotypes,Array{Array{Int32,1},1},Array{Array{Int32,1},1},Int64,Int64,Int64,Array{Array{Int32,1},1},Array{Array{Int32,1},1},Array{Array{Float64,1},1},Progress}}})()
     1         1 @Base/task.jl                                                                                              233 _wait(::Task)
     1         1 @Base/task.jl                                                                                              120 current_task
     1         0 @Base/task.jl                                                                                              535 enq_work(::Task)
     1         1 @Base/task.jl                                                                                              494 popfirst!(::Base.InvasiveLinkedListSynchronized{Task})
312557    312557 @Base/task.jl                                                                                              704 poptask(::Base.InvasiveLinkedListSynchronized{Task})
     1         0 @Base/task.jl                                                                                              552 schedule
     1         0 @Base/task.jl                                                                                              425 task_done_hook(::Task)
109352         0 @Base/task.jl                                                                                              442 task_done_hook(::Task)
     2         2 @Base/task.jl                                                                                              647 try_yieldto(::typeof(Base.ensure_rescheduled))
     3         3 @Base/task.jl                                                                                              656 try_yieldto(::typeof(Base.ensure_rescheduled))
312557         0 @Base/task.jl                                                                                              712 wait
     5         0 @Base/task.jl                                                                                              713 wait
     1         0 @Base/task.jl                                                                                              714 wait
  3168         0 @Base/threadingconstructs.jl                                                                               169 (::JLSO.var"#33#35"{JLSOFile,Dict{Symbol,Any},Symbol})()
     1         1 @Base/threadingconstructs.jl                                                                                10 threadid
    17         0 @Base/timing.jl                                                                                            232 macro expansion
381294         0 @Base/timing.jl                                                                                            233 macro expansion
     9         0 @Base/timing.jl                                                                                            234 macro expansion
     1         1 @Base/tuple.jl                                                                                              24 getindex
     1         0 @Base/tuple.jl                                                                                              61 iterate
     3         3 @Base/tuple.jl                                                                                              19 length
    90         0 @Base/tuple.jl                                                                                             157 map
    40         0 @Base/tuple.jl                                                                                             158 map
   533       533 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/LinearAlgebra/src/blas.jl           1374 gemm!(::Char, ::Char, ::Float32, ::Array{Float32,2}, ::SubArray{Float32,2,Array{Float32,2},Tuple{Base.Slice{Base.OneTo{Int64}},UnitRange{Int64}},true}, ::Float32, ::SubArray{Float32,2,Array{Float32,2},Tuple{Base.Slice{Base.OneTo{Int64}},UnitRange{Int64}},true})
   576       576 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/LinearAlgebra/src/blas.jl           1595 syrk!(::Char, ::Char, ::Float32, ::SubArray{Float32,2,Array{Float32,2},Tuple{Base.Slice{Base.OneTo{Int64}},UnitRange{Int64}},true}, ::Float32, ::SubArray{Float32,2,Array{Float32,2},Tuple{UnitRange{Int64},UnitRange{Int64}},false})
     2         2 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/LinearAlgebra/src/matmul.jl            ? copytri!
  1850         0 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/LinearAlgebra/src/matmul.jl          436 copytri!
     1         0 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/LinearAlgebra/src/matmul.jl          439 copytri!
  1847         1 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/LinearAlgebra/src/matmul.jl          440 copytri!
   533         0 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/LinearAlgebra/src/matmul.jl          597 gemm_wrapper!(::SubArray{Float32,2,Array{Float32,2},Tuple{Base.Slice{Base.OneTo{Int64}},UnitRange{Int64}},true}, ::Char, ::Char, ::Array{Float32,2}, ::SubArray{Float32,2,Array{Float32,2},Tuple{Base.Slice{Base.OneTo{Int64}},UnitRange{Int64}},true}, ::LinearAlgebra.MulAddMul{true,true,Bool,Bool})
  2961         0 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/LinearAlgebra/src/matmul.jl          208 mul!
  2428         0 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/LinearAlgebra/src/matmul.jl          308 mul!
   533         0 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/LinearAlgebra/src/matmul.jl          310 mul!
  2428         2 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/LinearAlgebra/src/matmul.jl          508 syrk_wrapper!(::SubArray{Float32,2,Array{Float32,2},Tuple{UnitRange{Int64},UnitRange{Int64}},false}, ::Char, ::SubArray{Float32,2,Array{Float32,2},Tuple{Base.Slice{Base.OneTo{Int64}},UnitRange{Int64}},true}, ::Bool, ::Bool)
     1         0 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/ext/TOML/src/TOML.jl              38 parse(::Base.GenericIOBuffer{Array{UInt8,1}})
     1         0 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/ext/TOML/src/TOML.jl              44 parse(::String)
     1         0 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/ext/TOML/src/TOML.jl              21 table2dict(::Pkg.TOML.Table)
     1         0 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/ext/TOML/src/TOML.jl              25 table2dict(::Pkg.TOML.Table)
  3168         0 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl   760 deserialize(::TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}})
     2         2 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl   772 deserialize(::Serialization.Serializer{TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}})
  3168         3 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl   773 deserialize
  3168         3 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl   773 deserialize(::Serialization.Serializer{TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}})
     3         0 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl  1334 deserialize(::Serialization.Serializer{TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}}, ::DataType)
   148         0 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl  1338 deserialize(::Serialization.Serializer{TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}}, ::DataType)
  3168         0 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl  1350 deserialize(::Serialization.Serializer{TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}}, ::DataType)
     1         1 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl  1356 deserialize(::Serialization.Serializer{TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}}, ::DataType)
  1452         1 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl  1373 deserialize(::Serialization.Serializer{TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}}, ::Type{Dict{Int32,Array{Int32,1}}})
     4         4 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl  1100 deserialize_array(::Serialization.Serializer{TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}})
     1         0 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl  1101 deserialize_array(::Serialization.Serializer{TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}})
    27         0 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl  1102 deserialize_array(::Serialization.Serializer{TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}})
     3         3 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl  1103 deserialize_array(::Serialization.Serializer{TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}})
    14         0 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl  1105 deserialize_array(::Serialization.Serializer{TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}})
     2         2 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl  1109 deserialize_array(::Serialization.Serializer{TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}})
   483       202 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl  1111 deserialize_array(::Serialization.Serializer{TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}})
   530         1 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl  1112 deserialize_array(::Serialization.Serializer{TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}})
  1085        11 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl  1113 deserialize_array(::Serialization.Serializer{TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}})
   166       144 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl  1142 deserialize_array(::Serialization.Serializer{TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}})
   721         1 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl  1143 deserialize_array(::Serialization.Serializer{TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}})
  3163         2 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl  1145 deserialize_array(::Serialization.Serializer{TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}})
     9         3 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl   778 deserialize_cycle
     2         0 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl  1362 deserialize_dict(::Serialization.Serializer{TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}}, ::Type{Dict{Int32,Array{Int32,1}}})
     6         0 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl  1363 deserialize_dict(::Serialization.Serializer{TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}}, ::Type{Dict{Int32,Array{Int32,1}}})
    27         0 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl  1365 deserialize_dict(::Serialization.Serializer{TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}}, ::Type{Dict{Int32,Array{Int32,1}}})
  1393         0 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl  1366 deserialize_dict(::Serialization.Serializer{TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}}, ::Type{Dict{Int32,Array{Int32,1}}})
    23         9 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl  1367 deserialize_dict(::Serialization.Serializer{TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}}, ::Type{Dict{Int32,Array{Int32,1}}})
     5         0 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl  1151 deserialize_fillarray!(::Array{String,1}, ::Serialization.Serializer{TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}})
  3163        11 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl  1153 deserialize_fillarray!(::Array{MendelImpute.CompressedWindow,1}, ::Serialization.Serializer{TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}})
     9         9 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl  1321 deserialize_string
     8         0 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl  1322 deserialize_string
     2         0 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl   794 gettable
    21        21 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl   809 handle_deserialize(::Serialization.Serializer{TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}}, ::Int32)
     1         0 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl   810 handle_deserialize(::Serialization.Serializer{TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}}, ::Int32)
    12         0 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl   811 handle_deserialize(::Serialization.Serializer{TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}}, ::Int32)
     3         1 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl   819 handle_deserialize(::Serialization.Serializer{TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}}, ::Int32)
  3168         4 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl   824 handle_deserialize(::Serialization.Serializer{TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}}, ::Int32)
     2         1 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl   833 handle_deserialize(::Serialization.Serializer{TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}}, ::Int32)
  3168         0 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl   837 handle_deserialize(::Serialization.Serializer{TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}}, ::Int32)
     1         0 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl   841 handle_deserialize(::Serialization.Serializer{TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}}, ::Int32)
  1606         3 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl   842 handle_deserialize(::Serialization.Serializer{TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}}, ::Int32)
     4         2 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl   851 handle_deserialize(::Serialization.Serializer{TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}}, ::Int32)
    22         0 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl   857 handle_deserialize(::Serialization.Serializer{TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}}, ::Int32)
  3168         0 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl   879 handle_deserialize(::Serialization.Serializer{TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}}, ::Int32)
    16         3 /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl   889 handle_deserialize(::Serialization.Serializer{TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}}, ::Int32)
  1993         0 @Automa/src/codegen.jl                                                                                     247 macro expansion
     8         8 @Automa/src/codegen.jl                                                                                     248 macro expansion
     2         0 @Automa/src/codegen.jl                                                                                     253 macro expansion
     1         0 @Automa/src/codegen.jl                                                                                     254 macro expansion
    16         0 @Automa/src/codegen.jl                                                                                     275 macro expansion
    29        20 @Automa/src/codegen.jl                                                                                     276 macro expansion
     1         0 @Automa/src/codegen.jl                                                                                     425 macro expansion
    16         0 @Automa/src/memory.jl                                                                                       57 getindex
     1         0 @BSON/src/read.jl                                                                                          104 load
     1         0 @BSON/src/read.jl                                                                                          101 parse
     1         0 @BSON/src/read.jl                                                                                           41 parse_array(::IOStream)
     1         0 @BSON/src/read.jl                                                                                           53 parse_doc(::IOStream)
     1         0 @BSON/src/read.jl                                                                                           15 parse_tag(::IOStream, ::BSON.BSONType)
     1         0 @BSON/src/read.jl                                                                                           17 parse_tag(::IOStream, ::BSON.BSONType)
     1         0 @BSON/src/read.jl                                                                                           26 parse_tag(::IOStream, ::BSON.BSONType)
     2         2 /home/biona001/.julia/packages/BioCore/YBJvb/src/Exceptions.jl                                              22 missingerror(::Symbol)
     1         0 /home/biona001/.julia/packages/BioCore/YBJvb/src/IO.jl                                                      34 eof(::GeneticVariation.VCF.Reader)
     2         0 /home/biona001/.julia/packages/BioCore/YBJvb/src/ReaderHelper.jl                                           147 _read!(::GeneticVariation.VCF.Reader, ::BioCore.Ragel.State{BufferedStreams.BufferedInputStream{TranscodingStreams.TranscodingStream{GzipDecompressor,IOStream}}}, ::GeneticVariation.VCF.Record)
     1         1 /home/biona001/.julia/packages/BioCore/YBJvb/src/ReaderHelper.jl                                           151 _read!(::GeneticVariation.VCF.Reader, ::BioCore.Ragel.State{BufferedStreams.BufferedInputStream{TranscodingStreams.TranscodingStream{GzipDecompressor,IOStream}}}, ::GeneticVariation.VCF.Record)
  2059         0 /home/biona001/.julia/packages/BioCore/YBJvb/src/ReaderHelper.jl                                           156 _read!(::GeneticVariation.VCF.Reader, ::BioCore.Ragel.State{BufferedStreams.BufferedInputStream{TranscodingStreams.TranscodingStream{GzipDecompressor,IOStream}}}, ::GeneticVariation.VCF.Record)
   124         0 /home/biona001/.julia/packages/BioCore/YBJvb/src/ReaderHelper.jl                                           172 _read!(::GeneticVariation.VCF.Reader, ::BioCore.Ragel.State{BufferedStreams.BufferedInputStream{TranscodingStreams.TranscodingStream{GzipDecompressor,IOStream}}}, ::GeneticVariation.VCF.Record)
     1         0 /home/biona001/.julia/packages/BioCore/YBJvb/src/ReaderHelper.jl                                            98 _readheader!(::GeneticVariation.VCF.Reader, ::BioCore.Ragel.State{BufferedStreams.BufferedInputStream{TranscodingStreams.TranscodingStream{GzipDecompressor,IOStream}}})
  2211        24 /home/biona001/.julia/packages/BioCore/YBJvb/src/ReaderHelper.jl                                           134 read!(::GeneticVariation.VCF.Reader, ::GeneticVariation.VCF.Record)
     1         0 /home/biona001/.julia/packages/BioCore/YBJvb/src/ReaderHelper.jl                                            80 readheader!(::GeneticVariation.VCF.Reader)
     5         0 /home/biona001/.julia/packages/BioCore/YBJvb/src/ReaderHelper.jl                                            36 resize_and_copy!
     4         0 /home/biona001/.julia/packages/BioCore/YBJvb/src/ReaderHelper.jl                                            44 resize_and_copy!
   124         0 /home/biona001/.julia/packages/BufferedStreams/hCA7W/src/bufferedinputstream.jl                             70 fillbuffer!(::BufferedStreams.BufferedInputStream{TranscodingStreams.TranscodingStream{GzipDecompressor,IOStream}})
   124         0 /home/biona001/.julia/packages/BufferedStreams/hCA7W/src/io.jl                                               5 readbytes!
  3331         0 @CodecZlib/src/compression.jl                                                                              175 process
  1692         0 @CodecZlib/src/decompression.jl                                                                            163 process
  3331      3331 @CodecZlib/src/libz.jl                                                                                      77 deflate!
  1692      1692 @CodecZlib/src/libz.jl                                                                                      93 inflate!
     9         0 @Distributions/src/univariate/continuous/chi.jl                                                             89 ccdf
     1         0 /home/biona001/.julia/packages/GeneticVariation/r8DAL/src/vcf/reader.jl                                     15 Reader
     1         0 /home/biona001/.julia/packages/GeneticVariation/r8DAL/src/vcf/reader.jl                                     28 GeneticVariation.VCF.Reader(::TranscodingStreams.TranscodingStream{GzipDecompressor,IOStream})
     5         0 /home/biona001/.julia/packages/GeneticVariation/r8DAL/src/vcf/reader.jl                                    290 macro expansion
     1         0 /home/biona001/.julia/packages/GeneticVariation/r8DAL/src/vcf/reader.jl                                     36 stream
     1         0 /home/biona001/.julia/packages/GeneticVariation/r8DAL/src/vcf/record.jl                                    622 #18
     3         0 /home/biona001/.julia/packages/GeneticVariation/r8DAL/src/vcf/record.jl                                    415 alt
     2         0 /home/biona001/.julia/packages/GeneticVariation/r8DAL/src/vcf/record.jl                                    350 chrom(::GeneticVariation.VCF.Record)
     1         0 /home/biona001/.julia/packages/GeneticVariation/r8DAL/src/vcf/record.jl                                    622 findgenokey
     2         0 /home/biona001/.julia/packages/GeneticVariation/r8DAL/src/vcf/record.jl                                    381 id
     7         0 /home/biona001/.julia/packages/GeneticVariation/r8DAL/src/vcf/record.jl                                    383 id
     2         0 /home/biona001/.julia/packages/GeneticVariation/r8DAL/src/vcf/record.jl                                     79 initialize!(::GeneticVariation.VCF.Record)
     1         0 /home/biona001/.julia/packages/GeneticVariation/r8DAL/src/vcf/record.jl                                    682 isequaldata(::String, ::Array{UInt8,1}, ::UnitRange{Int64})
     1         0 /home/biona001/.julia/packages/GeneticVariation/r8DAL/src/vcf/record.jl                                    686 memcmp
     4         0 /home/biona001/.julia/packages/GeneticVariation/r8DAL/src/vcf/record.jl                                    367 pos(::GeneticVariation.VCF.Record)
     3         0 /home/biona001/.julia/packages/GeneticVariation/r8DAL/src/vcf/record.jl                                    399 ref(::GeneticVariation.VCF.Record)
     2         0 @JLSO/src/file_io.jl                                                                                        88 #31
     2         0 @JLSO/src/file_io.jl                                                                                        88 load
     2         0 @JLSO/src/file_io.jl                                                                                        90 load(::IOStream)
  3168         0 @JLSO/src/file_io.jl                                                                                        97 macro expansion
     1         0 @JLSO/src/file_io.jl                                                                                        38 read(::IOStream, ::Type{JLSOFile})
     1         0 @JLSO/src/file_io.jl                                                                                        45 read(::IOStream, ::Type{JLSOFile})
  3168         0 @JLSO/src/serialization.jl                                                                                   4 deserialize(::Symbol, ::TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}})
  3168         0 @JLSO/src/serialization.jl                                                                                  10 deserialize(::JLSO.Formatter{:julia_serialize}, ::TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}})
  3168         0 @JLSO/src/serialization.jl                                                                                  53 getindex(::JLSOFile, ::Symbol)
     4         0 @MendelImpute/src/breakpoints.jl                                                                            27 continue_haplotype(::SubArray{Union{Missing, UInt8},1,Array{Union{Missing, UInt8},2},Tuple{UnitRange{Int64},Int64},true}, ::MendelImpute.CompressedHaplotypes, ::Int64, ::Tuple{Int32,Int32}, ::Tuple{Int32,Int32})
     2         0 @MendelImpute/src/breakpoints.jl                                                                            32 continue_haplotype(::SubArray{Union{Missing, UInt8},1,Array{Union{Missing, UInt8},2},Tuple{UnitRange{Int64},Int64},true}, ::MendelImpute.CompressedHaplotypes, ::Int64, ::Tuple{Int32,Int32}, ::Tuple{Int32,Int32})
     1         0 @MendelImpute/src/breakpoints.jl                                                                            33 continue_haplotype(::SubArray{Union{Missing, UInt8},1,Array{Union{Missing, UInt8},2},Tuple{UnitRange{Int64},Int64},true}, ::MendelImpute.CompressedHaplotypes, ::Int64, ::Tuple{Int32,Int32}, ::Tuple{Int32,Int32})
    10         0 @MendelImpute/src/breakpoints.jl                                                                            37 continue_haplotype(::SubArray{Union{Missing, UInt8},1,Array{Union{Missing, UInt8},2},Tuple{UnitRange{Int64},Int64},true}, ::MendelImpute.CompressedHaplotypes, ::Int64, ::Tuple{Int32,Int32}, ::Tuple{Int32,Int32})
    72         0 @MendelImpute/src/breakpoints.jl                                                                            39 continue_haplotype(::SubArray{Union{Missing, UInt8},1,Array{Union{Missing, UInt8},2},Tuple{UnitRange{Int64},Int64},true}, ::MendelImpute.CompressedHaplotypes, ::Int64, ::Tuple{Int32,Int32}, ::Tuple{Int32,Int32})
    12         0 @MendelImpute/src/breakpoints.jl                                                                            40 continue_haplotype(::SubArray{Union{Missing, UInt8},1,Array{Union{Missing, UInt8},2},Tuple{UnitRange{Int64},Int64},true}, ::MendelImpute.CompressedHaplotypes, ::Int64, ::Tuple{Int32,Int32}, ::Tuple{Int32,Int32})
    17         0 @MendelImpute/src/breakpoints.jl                                                                            41 continue_haplotype(::SubArray{Union{Missing, UInt8},1,Array{Union{Missing, UInt8},2},Tuple{UnitRange{Int64},Int64},true}, ::MendelImpute.CompressedHaplotypes, ::Int64, ::Tuple{Int32,Int32}, ::Tuple{Int32,Int32})
    11         0 @MendelImpute/src/breakpoints.jl                                                                            43 continue_haplotype(::SubArray{Union{Missing, UInt8},1,Array{Union{Missing, UInt8},2},Tuple{UnitRange{Int64},Int64},true}, ::MendelImpute.CompressedHaplotypes, ::Int64, ::Tuple{Int32,Int32}, ::Tuple{Int32,Int32})
     1         0 @MendelImpute/src/breakpoints.jl                                                                            74 continue_haplotype(::SubArray{Union{Missing, UInt8},1,Array{Union{Missing, UInt8},2},Tuple{UnitRange{Int64},Int64},true}, ::MendelImpute.CompressedHaplotypes, ::Int64, ::Tuple{Int32,Int32}, ::Tuple{Int32,Int32})
     3         0 @MendelImpute/src/breakpoints.jl                                                                            75 continue_haplotype(::SubArray{Union{Missing, UInt8},1,Array{Union{Missing, UInt8},2},Tuple{UnitRange{Int64},Int64},true}, ::MendelImpute.CompressedHaplotypes, ::Int64, ::Tuple{Int32,Int32}, ::Tuple{Int32,Int32})
     7         0 @MendelImpute/src/breakpoints.jl                                                                            79 continue_haplotype(::SubArray{Union{Missing, UInt8},1,Array{Union{Missing, UInt8},2},Tuple{UnitRange{Int64},Int64},true}, ::MendelImpute.CompressedHaplotypes, ::Int64, ::Tuple{Int32,Int32}, ::Tuple{Int32,Int32})
    36         0 @MendelImpute/src/breakpoints.jl                                                                            81 continue_haplotype(::SubArray{Union{Missing, UInt8},1,Array{Union{Missing, UInt8},2},Tuple{UnitRange{Int64},Int64},true}, ::MendelImpute.CompressedHaplotypes, ::Int64, ::Tuple{Int32,Int32}, ::Tuple{Int32,Int32})
    14         0 @MendelImpute/src/breakpoints.jl                                                                            82 continue_haplotype(::SubArray{Union{Missing, UInt8},1,Array{Union{Missing, UInt8},2},Tuple{UnitRange{Int64},Int64},true}, ::MendelImpute.CompressedHaplotypes, ::Int64, ::Tuple{Int32,Int32}, ::Tuple{Int32,Int32})
    15         0 @MendelImpute/src/breakpoints.jl                                                                            83 continue_haplotype(::SubArray{Union{Missing, UInt8},1,Array{Union{Missing, UInt8},2},Tuple{UnitRange{Int64},Int64},true}, ::MendelImpute.CompressedHaplotypes, ::Int64, ::Tuple{Int32,Int32}, ::Tuple{Int32,Int32})
    10         0 @MendelImpute/src/breakpoints.jl                                                                            85 continue_haplotype(::SubArray{Union{Missing, UInt8},1,Array{Union{Missing, UInt8},2},Tuple{UnitRange{Int64},Int64},true}, ::MendelImpute.CompressedHaplotypes, ::Int64, ::Tuple{Int32,Int32}, ::Tuple{Int32,Int32})
     1         1 @MendelImpute/src/breakpoints.jl                                                                             ? search_breakpoint(::SubArray{Union{Missing, UInt8},1,Array{Union{Missing, UInt8},2},Tuple{UnitRange{Int64},Int64},true}, ::BitArray{1}, ::BitArray{1}, ::BitArray{1})
     3         3 @MendelImpute/src/breakpoints.jl                                                                           121 search_breakpoint(::SubArray{Union{Missing, UInt8},1,Array{Union{Missing, UInt8},2},Tuple{UnitRange{Int64},Int64},true}, ::BitArray{1}, ::BitArray{1}, ::BitArray{1})
    15         0 @MendelImpute/src/breakpoints.jl                                                                           122 search_breakpoint(::SubArray{Union{Missing, UInt8},1,Array{Union{Missing, UInt8},2},Tuple{UnitRange{Int64},Int64},true}, ::BitArray{1}, ::BitArray{1}, ::BitArray{1})
     1         1 @MendelImpute/src/breakpoints.jl                                                                           131 search_breakpoint(::SubArray{Union{Missing, UInt8},1,Array{Union{Missing, UInt8},2},Tuple{UnitRange{Int64},Int64},true}, ::BitArray{1}, ::BitArray{1}, ::BitArray{1})
     2         0 @MendelImpute/src/breakpoints.jl                                                                           132 search_breakpoint(::SubArray{Union{Missing, UInt8},1,Array{Union{Missing, UInt8},2},Tuple{UnitRange{Int64},Int64},true}, ::BitArray{1}, ::BitArray{1}, ::BitArray{1})
    55         0 @MendelImpute/src/compress.jl                                                                              125 complete_idx_to_unique_all_idx
    24         0 @MendelImpute/src/compress.jl                                                                              134 complete_idx_to_unique_typed_idx
     7         0 @MendelImpute/src/compress.jl                                                                              116 unique_idx_to_complete_idx
    37         0 @MendelImpute/src/haplotype_pair.jl                                                                        416 haplopair!(::SubArray{Union{Missing, UInt8},2,Array{Union{Missing, UInt8},2},Tuple{UnitRange{Int64},Base.Slice{Base.OneTo{Int64}}},false}, ::BitArray{2}; happair1::Array{Int32,1}, happair2::Array{Int32,1}, hapscore::Array{Float32,1}, inv_sqrt_allele_var::Nothing, Xwork::Array{Float32,2}, Hwork::Array{Float32,2}, M::Array{Float32,2}, N::Array{Float32,2})
   780         0 @MendelImpute/src/haplotype_pair.jl                                                                        428 haplopair!(::SubArray{Union{Missing, UInt8},2,Array{Union{Missing, UInt8},2},Tuple{UnitRange{Int64},Base.Slice{Base.OneTo{Int64}}},false}, ::BitArray{2}; happair1::Array{Int32,1}, happair2::Array{Int32,1}, hapscore::Array{Float32,1}, inv_sqrt_allele_var::Nothing, Xwork::Array{Float32,2}, Hwork::Array{Float32,2}, M::Array{Float32,2}, N::Array{Float32,2})
363564         0 @MendelImpute/src/haplotype_pair.jl                                                                        430 haplopair!(::SubArray{Union{Missing, UInt8},2,Array{Union{Missing, UInt8},2},Tuple{UnitRange{Int64},Base.Slice{Base.OneTo{Int64}}},false}, ::BitArray{2}; happair1::Array{Int32,1}, happair2::Array{Int32,1}, hapscore::Array{Float32,1}, inv_sqrt_allele_var::Nothing, Xwork::Array{Float32,2}, Hwork::Array{Float32,2}, M::Array{Float32,2}, N::Array{Float32,2})
   410         0 @MendelImpute/src/haplotype_pair.jl                                                                         57 compute_optimal_haplotypes!(::Array{Array{Int32,1},1}, ::Array{Array{Int32,1},1}, ::MendelImpute.CompressedHaplotypes, ::Array{Union{Missing, UInt8},2}, ::Array{Int64,1}, ::Nothing, ::Nothing, ::Bool, ::Int64, ::Bool)
   397         0 @MendelImpute/src/haplotype_pair.jl                                                                         84 compute_optimal_haplotypes!(::Array{Array{Int32,1},1}, ::Array{Array{Int32,1},1}, ::MendelImpute.CompressedHaplotypes, ::Array{Union{Missing, UInt8},2}, ::Array{Int64,1}, ::Nothing, ::Nothing, ::Bool, ::Int64, ::Bool)
    10        10 @MendelImpute/src/haplotype_pair.jl                                                                          ? getindex
   136       136 @MendelImpute/src/haplotype_pair.jl                                                                          ? haplopair!(::Array{Int32,1}, ::Array{Int32,1}, ::Array{Float32,1}, ::SubArray{Float32,2,Array{Float32,2},Tuple{UnitRange{Int64},UnitRange{Int64}},false}, ::SubArray{Float32,2,Array{Float32,2},Tuple{Base.Slice{Base.OneTo{Int64}},UnitRange{Int64}},true})
  4404         0 @MendelImpute/src/haplotype_pair.jl                                                                        469 haplopair!(::Array{Float32,2}, ::SubArray{Float32,2,Array{Float32,2},Tuple{Base.Slice{Base.OneTo{Int64}},UnitRange{Int64}},true}, ::SubArray{Float32,2,Array{Float32,2},Tuple{UnitRange{Int64},UnitRange{Int64}},false}, ::SubArray{Float32,2,Array{Float32,2},Tuple{Base.Slice{Base.OneTo{Int64}},UnitRange{Int64}},true}, ::Array{Int32,1}, ::Array{Int32,1}, ::Array{Float32,1}, ::Nothing)
359129         0 @MendelImpute/src/haplotype_pair.jl                                                                        496 haplopair!(::Array{Float32,2}, ::SubArray{Float32,2,Array{Float32,2},Tuple{Base.Slice{Base.OneTo{Int64}},UnitRange{Int64}},true}, ::SubArray{Float32,2,Array{Float32,2},Tuple{UnitRange{Int64},UnitRange{Int64}},false}, ::SubArray{Float32,2,Array{Float32,2},Tuple{Base.Slice{Base.OneTo{Int64}},UnitRange{Int64}},true}, ::Array{Int32,1}, ::Array{Int32,1}, ::Array{Float32,1}, ::Nothing)
    31         0 @MendelImpute/src/haplotype_pair.jl                                                                        499 haplopair!(::Array{Float32,2}, ::SubArray{Float32,2,Array{Float32,2},Tuple{Base.Slice{Base.OneTo{Int64}},UnitRange{Int64}},true}, ::SubArray{Float32,2,Array{Float32,2},Tuple{UnitRange{Int64},UnitRange{Int64}},false}, ::SubArray{Float32,2,Array{Float32,2},Tuple{Base.Slice{Base.OneTo{Int64}},UnitRange{Int64}},true}, ::Array{Int32,1}, ::Array{Int32,1}, ::Array{Float32,1}, ::Nothing)
   836         0 @MendelImpute/src/haplotype_pair.jl                                                                        541 haplopair!(::Array{Int32,1}, ::Array{Int32,1}, ::Array{Float32,1}, ::SubArray{Float32,2,Array{Float32,2},Tuple{UnitRange{Int64},UnitRange{Int64}},false}, ::SubArray{Float32,2,Array{Float32,2},Tuple{Base.Slice{Base.OneTo{Int64}},UnitRange{Int64}},true})
  1060        40 @MendelImpute/src/haplotype_pair.jl                                                                        544 haplopair!(::Array{Int32,1}, ::Array{Int32,1}, ::Array{Float32,1}, ::SubArray{Float32,2,Array{Float32,2},Tuple{UnitRange{Int64},UnitRange{Int64}},false}, ::SubArray{Float32,2,Array{Float32,2},Tuple{Base.Slice{Base.OneTo{Int64}},UnitRange{Int64}},true})
 41879         0 @MendelImpute/src/haplotype_pair.jl                                                                        545 haplopair!(::Array{Int32,1}, ::Array{Int32,1}, ::Array{Float32,1}, ::SubArray{Float32,2,Array{Float32,2},Tuple{UnitRange{Int64},UnitRange{Int64}},false}, ::SubArray{Float32,2,Array{Float32,2},Tuple{Base.Slice{Base.OneTo{Int64}},UnitRange{Int64}},true})
 55706     34899 @MendelImpute/src/haplotype_pair.jl                                                                        546 haplopair!(::Array{Int32,1}, ::Array{Int32,1}, ::Array{Float32,1}, ::SubArray{Float32,2,Array{Float32,2},Tuple{UnitRange{Int64},UnitRange{Int64}},false}, ::SubArray{Float32,2,Array{Float32,2},Tuple{Base.Slice{Base.OneTo{Int64}},UnitRange{Int64}},true})
   146         0 @MendelImpute/src/haplotype_pair.jl                                                                        547 haplopair!(::Array{Int32,1}, ::Array{Int32,1}, ::Array{Float32,1}, ::SubArray{Float32,2,Array{Float32,2},Tuple{UnitRange{Int64},UnitRange{Int64}},false}, ::SubArray{Float32,2,Array{Float32,2},Tuple{Base.Slice{Base.OneTo{Int64}},UnitRange{Int64}},true})
 25109         0 @MendelImpute/src/haplotype_pair.jl                                                                        549 haplopair!(::Array{Int32,1}, ::Array{Int32,1}, ::Array{Float32,1}, ::SubArray{Float32,2,Array{Float32,2},Tuple{UnitRange{Int64},UnitRange{Int64}},false}, ::SubArray{Float32,2,Array{Float32,2},Tuple{Base.Slice{Base.OneTo{Int64}},UnitRange{Int64}},true})
 46043     12575 @MendelImpute/src/haplotype_pair.jl                                                                        550 haplopair!(::Array{Int32,1}, ::Array{Int32,1}, ::Array{Float32,1}, ::SubArray{Float32,2,Array{Float32,2},Tuple{UnitRange{Int64},UnitRange{Int64}},false}, ::SubArray{Float32,2,Array{Float32,2},Tuple{Base.Slice{Base.OneTo{Int64}},UnitRange{Int64}},true})
     3         0 @MendelImpute/src/haplotype_pair.jl                                                                        551 haplopair!(::Array{Int32,1}, ::Array{Int32,1}, ::Array{Float32,1}, ::SubArray{Float32,2,Array{Float32,2},Tuple{UnitRange{Int64},UnitRange{Int64}},false}, ::SubArray{Float32,2,Array{Float32,2},Tuple{Base.Slice{Base.OneTo{Int64}},UnitRange{Int64}},true})
 29907         0 @MendelImpute/src/haplotype_pair.jl                                                                        553 haplopair!(::Array{Int32,1}, ::Array{Int32,1}, ::Array{Float32,1}, ::SubArray{Float32,2,Array{Float32,2},Tuple{UnitRange{Int64},UnitRange{Int64}},false}, ::SubArray{Float32,2,Array{Float32,2},Tuple{Base.Slice{Base.OneTo{Int64}},UnitRange{Int64}},true})
 48588     11412 @MendelImpute/src/haplotype_pair.jl                                                                        554 haplopair!(::Array{Int32,1}, ::Array{Int32,1}, ::Array{Float32,1}, ::SubArray{Float32,2,Array{Float32,2},Tuple{UnitRange{Int64},UnitRange{Int64}},false}, ::SubArray{Float32,2,Array{Float32,2},Tuple{Base.Slice{Base.OneTo{Int64}},UnitRange{Int64}},true})
     6         0 @MendelImpute/src/haplotype_pair.jl                                                                        555 haplopair!(::Array{Int32,1}, ::Array{Int32,1}, ::Array{Float32,1}, ::SubArray{Float32,2,Array{Float32,2},Tuple{UnitRange{Int64},UnitRange{Int64}},false}, ::SubArray{Float32,2,Array{Float32,2},Tuple{Base.Slice{Base.OneTo{Int64}},UnitRange{Int64}},true})
 33118         0 @MendelImpute/src/haplotype_pair.jl                                                                        557 haplopair!(::Array{Int32,1}, ::Array{Int32,1}, ::Array{Float32,1}, ::SubArray{Float32,2,Array{Float32,2},Tuple{UnitRange{Int64},UnitRange{Int64}},false}, ::SubArray{Float32,2,Array{Float32,2},Tuple{Base.Slice{Base.OneTo{Int64}},UnitRange{Int64}},true})
 47511     22872 @MendelImpute/src/haplotype_pair.jl                                                                        558 haplopair!(::Array{Int32,1}, ::Array{Int32,1}, ::Array{Float32,1}, ::SubArray{Float32,2,Array{Float32,2},Tuple{UnitRange{Int64},UnitRange{Int64}},false}, ::SubArray{Float32,2,Array{Float32,2},Tuple{Base.Slice{Base.OneTo{Int64}},UnitRange{Int64}},true})
     1         0 @MendelImpute/src/haplotype_pair.jl                                                                        559 haplopair!(::Array{Int32,1}, ::Array{Int32,1}, ::Array{Float32,1}, ::SubArray{Float32,2,Array{Float32,2},Tuple{UnitRange{Int64},UnitRange{Int64}},false}, ::SubArray{Float32,2,Array{Float32,2},Tuple{Base.Slice{Base.OneTo{Int64}},UnitRange{Int64}},true})
 28274         5 @MendelImpute/src/haplotype_pair.jl                                                                        561 haplopair!(::Array{Int32,1}, ::Array{Int32,1}, ::Array{Float32,1}, ::SubArray{Float32,2,Array{Float32,2},Tuple{UnitRange{Int64},UnitRange{Int64}},false}, ::SubArray{Float32,2,Array{Float32,2},Tuple{Base.Slice{Base.OneTo{Int64}},UnitRange{Int64}},true})
   150         3 @MendelImpute/src/haplotype_pair.jl                                                                        564 haplopair!(::Array{Int32,1}, ::Array{Int32,1}, ::Array{Float32,1}, ::SubArray{Float32,2,Array{Float32,2},Tuple{UnitRange{Int64},UnitRange{Int64}},false}, ::SubArray{Float32,2,Array{Float32,2},Tuple{Base.Slice{Base.OneTo{Int64}},UnitRange{Int64}},true})
   653       199 @MendelImpute/src/haplotype_pair.jl                                                                        569 haplopair!(::Array{Int32,1}, ::Array{Int32,1}, ::Array{Float32,1}, ::SubArray{Float32,2,Array{Float32,2},Tuple{UnitRange{Int64},UnitRange{Int64}},false}, ::SubArray{Float32,2,Array{Float32,2},Tuple{Base.Slice{Base.OneTo{Int64}},UnitRange{Int64}},true})
364381         0 @MendelImpute/src/haplotype_pair.jl                                                                        412 (::MendelImpute.var"#haplopair!##kw")(::NamedTuple{(:inv_sqrt_allele_var, :happair1, :happair2, :hapscore, :Xwork, :Hwork, :M, :N),Tuple{Nothing,Array{Int32,1},Array{Int32,1},Array{Float32,1},Array{Float32,2},Array{Float32,2},Array{Float32,2},Array{Float32,2}}}, ::typeof(haplopair!), ::SubArray{Union{Missing, UInt8},2,Array{Union{Missing, UInt8},2},Tuple{UnitRange{Int64},Base.Slice{Base.OneTo{Int64}}},false}, ::Bi...
   159       158 @MendelImpute/src/haplotype_pair.jl                                                                        640 initXfloat!(::Array{Float32,2}, ::SubArray{Union{Missing, UInt8},2,Array{Union{Missing, UInt8},2},Tuple{UnitRange{Int64},Base.Slice{Base.OneTo{Int64}}},false})
     3         0 @MendelImpute/src/haplotype_pair.jl                                                                        641 initXfloat!(::Array{Float32,2}, ::SubArray{Union{Missing, UInt8},2,Array{Union{Missing, UInt8},2},Tuple{UnitRange{Int64},Base.Slice{Base.OneTo{Int64}}},false})
   207         0 @MendelImpute/src/haplotype_pair.jl                                                                        642 initXfloat!(::Array{Float32,2}, ::SubArray{Union{Missing, UInt8},2,Array{Union{Missing, UInt8},2},Tuple{UnitRange{Int64},Base.Slice{Base.OneTo{Int64}}},false})
   142       142 @MendelImpute/src/haplotype_pair.jl                                                                        648 initXfloat!(::Array{Float32,2}, ::SubArray{Union{Missing, UInt8},2,Array{Union{Missing, UInt8},2},Tuple{UnitRange{Int64},Base.Slice{Base.OneTo{Int64}}},false})
   211         0 @MendelImpute/src/haplotype_pair.jl                                                                        651 initXfloat!(::Array{Float32,2}, ::SubArray{Union{Missing, UInt8},2,Array{Union{Missing, UInt8},2},Tuple{UnitRange{Int64},Base.Slice{Base.OneTo{Int64}}},false})
    17         0 @MendelImpute/src/haplotype_pair.jl                                                                        656 initXfloat!(::Array{Float32,2}, ::SubArray{Union{Missing, UInt8},2,Array{Union{Missing, UInt8},2},Tuple{UnitRange{Int64},Base.Slice{Base.OneTo{Int64}}},false})
    40         0 @MendelImpute/src/haplotype_pair.jl                                                                        657 initXfloat!(::Array{Float32,2}, ::SubArray{Union{Missing, UInt8},2,Array{Union{Missing, UInt8},2},Tuple{UnitRange{Int64},Base.Slice{Base.OneTo{Int64}}},false})
     2         0 @MendelImpute/src/haplotype_pair.jl                                                                         62 macro expansion
   339         0 @MendelImpute/src/haplotype_pair.jl                                                                         77 macro expansion
    69         0 @MendelImpute/src/haplotype_pair.jl                                                                         78 macro expansion
364383         2 @MendelImpute/src/haplotype_pair.jl                                                                        129 macro expansion
    70         0 @MendelImpute/src/haplotype_pair.jl                                                                        136 macro expansion
     6         0 @MendelImpute/src/haplotype_pair.jl                                                                        149 macro expansion
    37         0 @MendelImpute/src/haplotype_pair.jl                                                                        424 macro expansion
  2428         0 @MendelImpute/src/haplotype_pair.jl                                                                        474 macro expansion
  1101         2 @MendelImpute/src/haplotype_pair.jl                                                                        479 macro expansion
   533         0 @MendelImpute/src/haplotype_pair.jl                                                                        489 macro expansion
   342         0 @MendelImpute/src/haplotype_pair.jl                                                                        490 macro expansion
   235         0 @MendelImpute/src/haplotype_pair.jl                                                                        491 macro expansion
    31         0 @MendelImpute/src/haplotype_pair.jl                                                                        501 macro expansion
    22         0 @MendelImpute/src/haplotype_pair.jl                                                                        502 macro expansion
    32         0 @MendelImpute/src/haplotype_pair.jl                                                                        181 save_haplotypes!(::Array{Array{Int32,1},1}, ::Array{Array{Int32,1},1}, ::Array{Int32,1}, ::Array{Int32,1}, ::MendelImpute.CompressedHaplotypes, ::Int64)
    38         0 @MendelImpute/src/haplotype_pair.jl                                                                        183 save_haplotypes!(::Array{Array{Int32,1},1}, ::Array{Array{Int32,1},1}, ::Array{Int32,1}, ::Array{Int32,1}, ::MendelImpute.CompressedHaplotypes, ::Int64)
     1         1 @MendelImpute/src/impute.jl                                                                                  ? getindex
     3         0 @MendelImpute/src/impute.jl                                                                                239 impute_discard_phase!(::Array{Union{Missing, UInt8},2}, ::MendelImpute.CompressedHaplotypes, ::Array{HaplotypeMosaicPair,1})
    29        29 @MendelImpute/src/impute.jl                                                                                  ? macro expansion
   279         0 @MendelImpute/src/impute.jl                                                                                240 macro expansion
    65        62 @MendelImpute/src/impute.jl                                                                                241 macro expansion
   531         0 @MendelImpute/src/impute.jl                                                                                243 macro expansion
   501         0 @MendelImpute/src/impute.jl                                                                                244 macro expansion
    21         0 @MendelImpute/src/impute.jl                                                                                249 macro expansion
    39         0 @MendelImpute/src/impute.jl                                                                                251 macro expansion
    51         0 @MendelImpute/src/impute.jl                                                                                255 macro expansion
    35         0 @MendelImpute/src/impute.jl                                                                                256 macro expansion
   362        14 @MendelImpute/src/impute.jl                                                                                257 macro expansion
     3         1 @MendelImpute/src/impute.jl                                                                                285 update_marker_position!(::Array{HaplotypeMosaicPair,1}, ::Array{Union{Nothing, Int64},1})
  4875         1 @MendelImpute/src/impute.jl                                                                                 17 write(::String, ::Array{Union{Missing, UInt8},2}, ::MendelImpute.CompressedHaplotypes, ::Array{String,1})
     1         0 @MendelImpute/src/impute.jl                                                                                 29 write(::String, ::Array{Union{Missing, UInt8},2}, ::MendelImpute.CompressedHaplotypes, ::Array{String,1}, ::Nothing)
    43         0 @MendelImpute/src/impute.jl                                                                                 46 write(::String, ::Array{Union{Missing, UInt8},2}, ::MendelImpute.CompressedHaplotypes, ::Array{String,1}, ::Nothing)
  1280         0 @MendelImpute/src/impute.jl                                                                                 50 write(::String, ::Array{Union{Missing, UInt8},2}, ::MendelImpute.CompressedHaplotypes, ::Array{String,1}, ::Nothing)
  3494         2 @MendelImpute/src/impute.jl                                                                                 52 write(::String, ::Array{Union{Missing, UInt8},2}, ::MendelImpute.CompressedHaplotypes, ::Array{String,1}, ::Nothing)
    56         0 @MendelImpute/src/impute.jl                                                                                 53 write(::String, ::Array{Union{Missing, UInt8},2}, ::MendelImpute.CompressedHaplotypes, ::Array{String,1}, ::Nothing)
    16        16 @MendelImpute/src/impute.jl                                                                                  ? write_snp!(::Base.GenericIOBuffer{Array{UInt8,1}}, ::SubArray{Union{Missing, UInt8},1,Array{Union{Missing, UInt8},2},Tuple{Int64,Base.Slice{Base.OneTo{Int64}}},true})
   697       429 @MendelImpute/src/impute.jl                                                                                127 write_snp!(::Base.GenericIOBuffer{Array{UInt8,1}}, ::SubArray{Union{Missing, UInt8},1,Array{Union{Missing, UInt8},2},Tuple{Int64,Base.Slice{Base.OneTo{Int64}}},true})
   513         0 @MendelImpute/src/impute.jl                                                                                128 write_snp!(::Base.GenericIOBuffer{Array{UInt8,1}}, ::SubArray{Union{Missing, UInt8},1,Array{Union{Missing, UInt8},2},Tuple{Int64,Base.Slice{Base.OneTo{Int64}}},true})
    10         2 @MendelImpute/src/impute.jl                                                                                129 write_snp!(::Base.GenericIOBuffer{Array{UInt8,1}}, ::SubArray{Union{Missing, UInt8},1,Array{Union{Missing, UInt8},2},Tuple{Int64,Base.Slice{Base.OneTo{Int64}}},true})
    31         0 @MendelImpute/src/impute.jl                                                                                130 write_snp!(::Base.GenericIOBuffer{Array{UInt8,1}}, ::SubArray{Union{Missing, UInt8},1,Array{Union{Missing, UInt8},2},Tuple{Int64,Base.Slice{Base.OneTo{Int64}}},true})
     2         0 @MendelImpute/src/impute.jl                                                                                131 write_snp!(::Base.GenericIOBuffer{Array{UInt8,1}}, ::SubArray{Union{Missing, UInt8},1,Array{Union{Missing, UInt8},2},Tuple{Int64,Base.Slice{Base.OneTo{Int64}}},true})
     9         0 @MendelImpute/src/impute.jl                                                                                132 write_snp!(::Base.GenericIOBuffer{Array{UInt8,1}}, ::SubArray{Union{Missing, UInt8},1,Array{Union{Missing, UInt8},2},Tuple{Int64,Base.Slice{Base.OneTo{Int64}}},true})
     2         0 @MendelImpute/src/impute.jl                                                                                137 write_snp!(::Base.GenericIOBuffer{Array{UInt8,1}}, ::SubArray{Union{Missing, UInt8},1,Array{Union{Missing, UInt8},2},Tuple{Int64,Base.Slice{Base.OneTo{Int64}}},true})
     6         6 @MendelImpute/src/intersect.jl                                                                               ? getindex
     2         2 @MendelImpute/src/intersect.jl                                                                             199 intersect_lange!(::Array{Int32,1}, ::Array{Int32,1})
     5         0 @MendelImpute/src/intersect.jl                                                                             200 intersect_lange!(::Array{Int32,1}, ::Array{Int32,1})
  1488      1350 @MendelImpute/src/intersect.jl                                                                             205 intersect_lange!(::Array{Int32,1}, ::Array{Int32,1})
   945         0 @MendelImpute/src/intersect.jl                                                                             206 intersect_lange!(::Array{Int32,1}, ::Array{Int32,1})
   383         0 @MendelImpute/src/intersect.jl                                                                             207 intersect_lange!(::Array{Int32,1}, ::Array{Int32,1})
   442         0 @MendelImpute/src/intersect.jl                                                                             208 intersect_lange!(::Array{Int32,1}, ::Array{Int32,1})
     1         0 @MendelImpute/src/intersect.jl                                                                             209 intersect_lange!(::Array{Int32,1}, ::Array{Int32,1})
   915         0 @MendelImpute/src/intersect.jl                                                                             211 intersect_lange!(::Array{Int32,1}, ::Array{Int32,1})
   259         0 @MendelImpute/src/intersect.jl                                                                             212 intersect_lange!(::Array{Int32,1}, ::Array{Int32,1})
   216         0 @MendelImpute/src/intersect.jl                                                                             214 intersect_lange!(::Array{Int32,1}, ::Array{Int32,1})
    13         0 @MendelImpute/src/intersect.jl                                                                             217 intersect_lange!(::Array{Int32,1}, ::Array{Int32,1})
     2         2 @MendelImpute/src/intersect.jl                                                                             218 intersect_lange!(::Array{Int32,1}, ::Array{Int32,1})
     3         3 @MendelImpute/src/intersect.jl                                                                               ? intersect_size_sorted
  2625      2152 @MendelImpute/src/intersect.jl                                                                             178 intersect_size_sorted
  2948         0 @MendelImpute/src/intersect.jl                                                                             179 intersect_size_sorted
   524         0 @MendelImpute/src/intersect.jl                                                                             180 intersect_size_sorted
   363         0 @MendelImpute/src/intersect.jl                                                                             181 intersect_size_sorted
  1886         0 @MendelImpute/src/intersect.jl                                                                             183 intersect_size_sorted
   729         0 @MendelImpute/src/intersect.jl                                                                             184 intersect_size_sorted
   756         0 @MendelImpute/src/intersect.jl                                                                             186 intersect_size_sorted
     6         0 @MendelImpute/src/intersect.jl                                                                             191 intersect_size_sorted
     4         4 @MendelImpute/src/intersect.jl                                                                               ? phase_sample!(::Array{Int32,1}, ::Array{Int32,1}, ::MendelImpute.CompressedHaplotypes, ::Array{Int32,1}, ::Array{Int32,1})
     2         0 @MendelImpute/src/intersect.jl                                                                              34 phase_sample!(::Array{Int32,1}, ::Array{Int32,1}, ::MendelImpute.CompressedHaplotypes, ::Array{Int32,1}, ::Array{Int32,1})
     3         0 @MendelImpute/src/intersect.jl                                                                              37 phase_sample!(::Array{Int32,1}, ::Array{Int32,1}, ::MendelImpute.CompressedHaplotypes, ::Array{Int32,1}, ::Array{Int32,1})
   102         0 @MendelImpute/src/intersect.jl                                                                              41 phase_sample!(::Array{Int32,1}, ::Array{Int32,1}, ::MendelImpute.CompressedHaplotypes, ::Array{Int32,1}, ::Array{Int32,1})
     6         0 @MendelImpute/src/intersect.jl                                                                              42 phase_sample!(::Array{Int32,1}, ::Array{Int32,1}, ::MendelImpute.CompressedHaplotypes, ::Array{Int32,1}, ::Array{Int32,1})
  2991        11 @MendelImpute/src/intersect.jl                                                                              48 phase_sample!(::Array{Int32,1}, ::Array{Int32,1}, ::MendelImpute.CompressedHaplotypes, ::Array{Int32,1}, ::Array{Int32,1})
  1919        21 @MendelImpute/src/intersect.jl                                                                              49 phase_sample!(::Array{Int32,1}, ::Array{Int32,1}, ::MendelImpute.CompressedHaplotypes, ::Array{Int32,1}, ::Array{Int32,1})
  2220         0 @MendelImpute/src/intersect.jl                                                                              50 phase_sample!(::Array{Int32,1}, ::Array{Int32,1}, ::MendelImpute.CompressedHaplotypes, ::Array{Int32,1}, ::Array{Int32,1})
  2742         0 @MendelImpute/src/intersect.jl                                                                              51 phase_sample!(::Array{Int32,1}, ::Array{Int32,1}, ::MendelImpute.CompressedHaplotypes, ::Array{Int32,1}, ::Array{Int32,1})
     1         1 @MendelImpute/src/intersect.jl                                                                              53 phase_sample!(::Array{Int32,1}, ::Array{Int32,1}, ::MendelImpute.CompressedHaplotypes, ::Array{Int32,1}, ::Array{Int32,1})
     1         0 @MendelImpute/src/intersect.jl                                                                              62 phase_sample!(::Array{Int32,1}, ::Array{Int32,1}, ::MendelImpute.CompressedHaplotypes, ::Array{Int32,1}, ::Array{Int32,1})
    90         1 @MendelImpute/src/intersect.jl                                                                              63 phase_sample!(::Array{Int32,1}, ::Array{Int32,1}, ::MendelImpute.CompressedHaplotypes, ::Array{Int32,1}, ::Array{Int32,1})
   538         1 @MendelImpute/src/intersect.jl                                                                              66 phase_sample!(::Array{Int32,1}, ::Array{Int32,1}, ::MendelImpute.CompressedHaplotypes, ::Array{Int32,1}, ::Array{Int32,1})
     1         0 @MendelImpute/src/intersect.jl                                                                              67 phase_sample!(::Array{Int32,1}, ::Array{Int32,1}, ::MendelImpute.CompressedHaplotypes, ::Array{Int32,1}, ::Array{Int32,1})
   154         4 @MendelImpute/src/intersect.jl                                                                              71 phase_sample!(::Array{Int32,1}, ::Array{Int32,1}, ::MendelImpute.CompressedHaplotypes, ::Array{Int32,1}, ::Array{Int32,1})
  1128         0 @MendelImpute/src/intersect.jl                                                                              74 phase_sample!(::Array{Int32,1}, ::Array{Int32,1}, ::MendelImpute.CompressedHaplotypes, ::Array{Int32,1}, ::Array{Int32,1})
     1         1 @MendelImpute/src/intersect.jl                                                                              78 phase_sample!(::Array{Int32,1}, ::Array{Int32,1}, ::MendelImpute.CompressedHaplotypes, ::Array{Int32,1}, ::Array{Int32,1})
   298         9 @MendelImpute/src/intersect.jl                                                                              80 phase_sample!(::Array{Int32,1}, ::Array{Int32,1}, ::MendelImpute.CompressedHaplotypes, ::Array{Int32,1}, ::Array{Int32,1})
  1852         0 @MendelImpute/src/intersect.jl                                                                              83 phase_sample!(::Array{Int32,1}, ::Array{Int32,1}, ::MendelImpute.CompressedHaplotypes, ::Array{Int32,1}, ::Array{Int32,1})
   237         4 @MendelImpute/src/intersect.jl                                                                              88 phase_sample!(::Array{Int32,1}, ::Array{Int32,1}, ::MendelImpute.CompressedHaplotypes, ::Array{Int32,1}, ::Array{Int32,1})
  1150         0 @MendelImpute/src/intersect.jl                                                                              91 phase_sample!(::Array{Int32,1}, ::Array{Int32,1}, ::MendelImpute.CompressedHaplotypes, ::Array{Int32,1}, ::Array{Int32,1})
   761         0 @MendelImpute/src/intersect.jl                                                                             112 store!(::Array{Int32,1}, ::Array{Int32,1})
     1         0 @MendelImpute/src/intersect.jl                                                                             112 store!
     2         0 @MendelImpute/src/phasing.jl                                                                                66 phase(::String, ::String; outfile::String, impute::Bool, phase::Bool, width::Int64, rescreen::Bool, max_haplotypes::Int64, stepwise::Nothing, thinning_factor::Nothing, scale_allelefreq::Bool, dynamic_programming::Bool)
  3356         0 @MendelImpute/src/phasing.jl                                                                                82 phase(::String, ::String; outfile::String, impute::Bool, phase::Bool, width::Int64, rescreen::Bool, max_haplotypes::Int64, stepwise::Nothing, thinning_factor::Nothing, scale_allelefreq::Bool, dynamic_programming::Bool)
     1         0 @MendelImpute/src/phasing.jl                                                                               111 phase(::String, ::String; outfile::String, impute::Bool, phase::Bool, width::Int64, rescreen::Bool, max_haplotypes::Int64, stepwise::Nothing, thinning_factor::Nothing, scale_allelefreq::Bool, dynamic_programming::Bool)
   807         0 @MendelImpute/src/phasing.jl                                                                               124 phase(::String, ::String; outfile::String, impute::Bool, phase::Bool, width::Int64, rescreen::Bool, max_haplotypes::Int64, stepwise::Nothing, thinning_factor::Nothing, scale_allelefreq::Bool, dynamic_programming::Bool)
    16         0 @MendelImpute/src/phasing.jl                                                                               138 phase(::String, ::String; outfile::String, impute::Bool, phase::Bool, width::Int64, rescreen::Bool, max_haplotypes::Int64, stepwise::Nothing, thinning_factor::Nothing, scale_allelefreq::Bool, dynamic_programming::Bool)
    41         0 @MendelImpute/src/phasing.jl                                                                               147 phase(::String, ::String; outfile::String, impute::Bool, phase::Bool, width::Int64, rescreen::Bool, max_haplotypes::Int64, stepwise::Nothing, thinning_factor::Nothing, scale_allelefreq::Bool, dynamic_programming::Bool)
     3         0 @MendelImpute/src/phasing.jl                                                                               150 phase(::String, ::String; outfile::String, impute::Bool, phase::Bool, width::Int64, rescreen::Bool, max_haplotypes::Int64, stepwise::Nothing, thinning_factor::Nothing, scale_allelefreq::Bool, dynamic_programming::Bool)
   103         0 @MendelImpute/src/phasing.jl                                                                               160 phase(::String, ::String; outfile::String, impute::Bool, phase::Bool, width::Int64, rescreen::Bool, max_haplotypes::Int64, stepwise::Nothing, thinning_factor::Nothing, scale_allelefreq::Bool, dynamic_programming::Bool)
    53         0 @MendelImpute/src/phasing.jl                                                                               161 phase(::String, ::String; outfile::String, impute::Bool, phase::Bool, width::Int64, rescreen::Bool, max_haplotypes::Int64, stepwise::Nothing, thinning_factor::Nothing, scale_allelefreq::Bool, dynamic_programming::Bool)
     3         0 @MendelImpute/src/phasing.jl                                                                               164 phase(::String, ::String; outfile::String, impute::Bool, phase::Bool, width::Int64, rescreen::Bool, max_haplotypes::Int64, stepwise::Nothing, thinning_factor::Nothing, scale_allelefreq::Bool, dynamic_programming::Bool)
  4875         1 @MendelImpute/src/phasing.jl                                                                               165 phase(::String, ::String; outfile::String, impute::Bool, phase::Bool, width::Int64, rescreen::Bool, max_haplotypes::Int64, stepwise::Nothing, thinning_factor::Nothing, scale_allelefreq::Bool, dynamic_programming::Bool)
 15445         0 @MendelImpute/src/phasing.jl                                                                               459 macro expansion
   536         0 @MendelImpute/src/phasing.jl                                                                               463 macro expansion
   536         0 @MendelImpute/src/phasing.jl                                                                               468 macro expansion
   228         0 @MendelImpute/src/phasing.jl                                                                               490 macro expansion
   252         0 @MendelImpute/src/phasing.jl                                                                               494 macro expansion
   167         2 @MendelImpute/src/phasing.jl                                                                               496 macro expansion
    71         0 @MendelImpute/src/phasing.jl                                                                               499 macro expansion
     2         0 @MendelImpute/src/phasing.jl                                                                               503 macro expansion
  9260         0 @MendelImpute/src/phasing.jl                                                                                55 (::MendelImpute.var"#phase##kw")(::NamedTuple{(:outfile, :impute, :width, :dynamic_programming),Tuple{String,Bool,Int64,Bool}}, ::typeof(phase), ::String, ::String)
    16         0 @MendelImpute/src/phasing.jl                                                                               455 phase_fast!(::Array{HaplotypeMosaicPair,1}, ::Array{Union{Missing, UInt8},2}, ::MendelImpute.CompressedHaplotypes, ::Array{Array{Int32,1},1}, ::Array{Array{Int32,1},1})
    32         0 @MendelImpute/src/phasing.jl                                                                               353 update_phase!(::HaplotypeMosaic, ::MendelImpute.CompressedHaplotypes, ::Int64, ::Int32, ::Int32, ::Int64, ::Int64, ::Int64, ::Int64)
   108         0 @MendelImpute/src/phasing.jl                                                                               354 update_phase!(::HaplotypeMosaic, ::MendelImpute.CompressedHaplotypes, ::Int64, ::Int32, ::Int32, ::Int64, ::Int64, ::Int64, ::Int64)
     5         0 @MendelImpute/src/phasing.jl                                                                               355 update_phase!(::HaplotypeMosaic, ::MendelImpute.CompressedHaplotypes, ::Int64, ::Int32, ::Int32, ::Int64, ::Int64, ::Int64, ::Int64)
    63         0 @MendelImpute/src/phasing.jl                                                                               356 update_phase!(::HaplotypeMosaic, ::MendelImpute.CompressedHaplotypes, ::Int64, ::Int32, ::Int32, ::Int64, ::Int64, ::Int64, ::Int64)
     1         0 @MendelImpute/src/phasing.jl                                                                               374 update_phase!(::HaplotypeMosaic, ::MendelImpute.CompressedHaplotypes, ::Int64, ::Int32, ::Int32, ::Int64, ::Int64, ::Int64, ::Int64)
     1         0 @MendelImpute/src/phasing.jl                                                                               380 update_phase!(::HaplotypeMosaic, ::MendelImpute.CompressedHaplotypes, ::Int64, ::Int32, ::Int32, ::Int64, ::Int64, ::Int64, ::Int64)
    10         0 @MendelImpute/src/phasing.jl                                                                               387 update_phase!(::HaplotypeMosaic, ::MendelImpute.CompressedHaplotypes, ::Int64, ::Int32, ::Int32, ::Int64, ::Int64, ::Int64, ::Int64)
     1         0 @MendelImpute/src/phasing.jl                                                                               389 update_phase!(::HaplotypeMosaic, ::MendelImpute.CompressedHaplotypes, ::Int64, ::Int32, ::Int32, ::Int64, ::Int64, ::Int64, ::Int64)
     2         0 @MendelImpute/src/phasing.jl                                                                               391 update_phase!(::HaplotypeMosaic, ::MendelImpute.CompressedHaplotypes, ::Int64, ::Int32, ::Int32, ::Int64, ::Int64, ::Int64, ::Int64)
    11         0 @MendelImpute/src/phasing.jl                                                                               393 update_phase!(::HaplotypeMosaic, ::MendelImpute.CompressedHaplotypes, ::Int64, ::Int32, ::Int32, ::Int64, ::Int64, ::Int64, ::Int64)
     1         0 @MendelImpute/src/phasing.jl                                                                               395 update_phase!(::HaplotypeMosaic, ::MendelImpute.CompressedHaplotypes, ::Int64, ::Int32, ::Int32, ::Int64, ::Int64, ::Int64, ::Int64)
    61         0 @ProgressMeter/src/ProgressMeter.jl                                                                        336 #13
    77         3 @ProgressMeter/src/ProgressMeter.jl                                                                        334 #next!#12
     1         1 @ProgressMeter/src/ProgressMeter.jl                                                                        200 updateProgress!(::Progress; showvalues::Tuple{}, valuecolor::Symbol, offset::Int64, keep::Bool, desc::String)
    42        16 @ProgressMeter/src/ProgressMeter.jl                                                                        202 updateProgress!(::Progress; showvalues::Tuple{}, valuecolor::Symbol, offset::Int64, keep::Bool, desc::String)
     6         0 @ProgressMeter/src/ProgressMeter.jl                                                                        204 updateProgress!(::Progress; showvalues::Tuple{}, valuecolor::Symbol, offset::Int64, keep::Bool, desc::String)
    77         0 @ProgressMeter/src/ProgressMeter.jl                                                                        334 next!
    61        12 @ProgressMeter/src/ProgressMeter.jl                                                                        201 updateProgress!(::Progress)
     9         9 @StatsFuns/src/rmath.jl                                                                                     80 chisqccdf
   416         0 @ThreadPools/src/interface.jl                                                                              103 pwith
   416         0 @ThreadPools/src/interface.jl                                                                               39 tforeach
   416         0 @ThreadPools/src/interface.jl                                                                               43 tforeach
     3         0 @ThreadPools/src/macros.jl                                                                                  18 #139
  1973         0 @ThreadPools/src/macros.jl                                                                                  19 (::MendelImpute.var"#140#142"{Array{Union{Missing, UInt8},2},MendelImpute.CompressedHaplotypes,Array{HaplotypeMosaicPair,1},Int64})(::Int64)
    16         0 @ThreadPools/src/macros.jl                                                                                  18 #31
 16463         0 @ThreadPools/src/macros.jl                                                                                  19 (::MendelImpute.var"#32#37"{Array{HaplotypeMosaicPair,1},Array{Union{Missing, UInt8},2},MendelImpute.CompressedHaplotypes,Array{Array{Int32,1},1},Array{Array{Int32,1},1},Int64,Int64,Int64,Array{Array{Int32,1},1},Array{Array{Int32,1},1},Array{Array{Float64,1},1},Progress})(::Int64)
   397         0 @ThreadPools/src/macros.jl                                                                                  18 #57
364459         0 @ThreadPools/src/macros.jl                                                                                  19 (::MendelImpute.var"#58#80"{Array{Array{Int32,1},1},Array{Array{Int32,1},1},MendelImpute.CompressedHaplotypes,Array{Union{Missing, UInt8},2},Array{Int64,1},Nothing,Nothing,Bool,Int64,Bool,Int64,Int64,Int64,Array{Array{Float64,1},1},Array{Array{Int32,1},1},Array{Array{Int32,1},1},Array{Array{Float32,1},1},Array{Array{Float32,2},1},Array{Array{Float32,2},1},Progress})(::Int64)
   416         0 @ThreadPools/src/macros.jl                                                                                  17 macro expansion
382895         0 @ThreadPools/src/qpool.jl                                                                                   83 (::ThreadPools.var"#59#60"{ThreadPools.var"#63#65"{MendelImpute.var"#58#80"{Array{Array{Int32,1},1},Array{Array{Int32,1},1},MendelImpute.CompressedHaplotypes,Array{Union{Missing, UInt8},2},Array{Int64,1},Nothing,Nothing,Bool,Int64,Bool,Int64,Int64,Int64,Array{Array{Float64,1},1},Array{Array{Int32,1},1},Array{Array{Int32,1},1},Array{Array{Float32,1},1},Array{Array{Float32,2},1},Array{Array{Float32,2},1},Progress}},...
382895         0 @ThreadPools/src/qpool.jl                                                                                  192 #63
    12         0 @ThreadPools/src/qpool.jl                                                                                   26 _default_handler(::ThreadPools.QueuePool)
     1         0 @ThreadPools/src/qpool.jl                                                                                   27 _default_handler(::ThreadPools.QueuePool)
200462         0 @ThreadPools/src/qpool.jl                                                                                   29 _default_handler(::ThreadPools.QueuePool)
  2324         0 @ThreadPools/src/qpool.jl                                                                                   30 _default_handler(::ThreadPools.QueuePool)
     1         1 @ThreadPools/src/qpool.jl                                                                                    ? macro expansion
   414         0 @ThreadPools/src/qpool.jl                                                                                   93 take!
   416         2 @ThreadPools/src/qpool.jl                                                                                  199 tmap(::ThreadPools.QueuePool, ::MendelImpute.var"#58#80"{Array{Array{Int32,1},1},Array{Array{Int32,1},1},MendelImpute.CompressedHaplotypes,Array{Union{Missing, UInt8},2},Array{Int64,1},Nothing,Nothing,Bool,Int64,Bool,Int64,Int64,Int64,Array{Array{Float64,1},1},Array{Array{Int32,1},1},Array{Array{Int32,1},1},Array{Array{Float32,1},1},Array{Array{Float32,2},1},Array{Array{Float32,2},1},Progress}, ::UnitRange{Int64})
     7         0 @TranscodingStreams/src/buffer.jl                                                                           96 #consumed!#1
     1         0 @TranscodingStreams/src/buffer.jl                                                                          129 makemargin!(::TranscodingStreams.Buffer, ::Int64; eager::Bool)
    10         0 @TranscodingStreams/src/buffer.jl                                                                          141 makemargin!(::TranscodingStreams.Buffer, ::Int64; eager::Bool)
     1         0 @TranscodingStreams/src/buffer.jl                                                                          149 makemargin!(::TranscodingStreams.Buffer, ::Int64; eager::Bool)
     1         0 @TranscodingStreams/src/buffer.jl                                                                           47 bufferptr
     1         0 @TranscodingStreams/src/buffer.jl                                                                           51 buffersize
     7         0 @TranscodingStreams/src/buffer.jl                                                                           96 consumed!
    12         0 @TranscodingStreams/src/buffer.jl                                                                          190 copydata!
   116         0 @TranscodingStreams/src/buffer.jl                                                                          200 copydata!
     1         0 @TranscodingStreams/src/buffer.jl                                                                          201 copydata!
    12         0 @TranscodingStreams/src/buffer.jl                                                                          128 makemargin!
     1         0 @TranscodingStreams/src/buffer.jl                                                                           63 marginsize
     2         0 @TranscodingStreams/src/buffer.jl                                                                          159 readbyte!
     6         0 @TranscodingStreams/src/buffer.jl                                                                          160 readbyte!
    19         0 @TranscodingStreams/src/io.jl                                                                               25 unsafe_read(::TranscodingStreams.TranscodingStream{GzipDecompressor,IOStream}, ::Ptr{UInt8}, ::Int64)
     1         0 @TranscodingStreams/src/io.jl                                                                               27 unsafe_read(::TranscodingStreams.TranscodingStream{GzipDecompressor,IOStream}, ::Ptr{UInt8}, ::Int64)
     1         1 @TranscodingStreams/src/stream.jl                                                                            ? fillbuffer(::TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}; eager::Bool)
     1         1 @TranscodingStreams/src/stream.jl                                                                          563 fillbuffer(::TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}; eager::Bool)
     3         3 @TranscodingStreams/src/stream.jl                                                                          564 fillbuffer(::TranscodingStreams.TranscodingStream{GzipDecompressor,IOStream}; eager::Bool)
     1         0 @TranscodingStreams/src/stream.jl                                                                          565 fillbuffer(::TranscodingStreams.TranscodingStream{GzipDecompressor,IOStream}; eager::Bool)
    12         0 @TranscodingStreams/src/stream.jl                                                                          575 fillbuffer(::TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}; eager::Bool)
    21         0 @TranscodingStreams/src/stream.jl                                                                          576 fillbuffer(::TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}; eager::Bool)
  1695         0 @TranscodingStreams/src/stream.jl                                                                          577 fillbuffer(::TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}; eager::Bool)
  5024         0 @TranscodingStreams/src/stream.jl                                                                          637 callprocess(::TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}, ::TranscodingStreams.Buffer, ::TranscodingStreams.Buffer)
     9         0 @TranscodingStreams/src/stream.jl                                                                          638 callprocess(::TranscodingStreams.TranscodingStream{GzipDecompressor,IOStream}, ::TranscodingStreams.Buffer, ::TranscodingStreams.Buffer)
     1         1 @TranscodingStreams/src/stream.jl                                                                            ? eof
     1         1 @TranscodingStreams/src/stream.jl                                                                            ? eof(::TranscodingStreams.TranscodingStream{GzipDecompressor,IOStream})
     1         1 @TranscodingStreams/src/stream.jl                                                                          182 eof(::TranscodingStreams.TranscodingStream{GzipDecompressor,IOStream})
     1         0 @TranscodingStreams/src/stream.jl                                                                          183 eof(::TranscodingStreams.TranscodingStream{GzipDecompressor,IOStream})
     1         0 @TranscodingStreams/src/stream.jl                                                                          184 eof
     1         0 @TranscodingStreams/src/stream.jl                                                                          187 eof
  1000         0 @TranscodingStreams/src/stream.jl                                                                          188 eof
   735         1 @TranscodingStreams/src/stream.jl                                                                          188 eof(::TranscodingStreams.TranscodingStream{GzipDecompressor,IOStream})
  1733         0 @TranscodingStreams/src/stream.jl                                                                          564 fillbuffer
  3343         0 @TranscodingStreams/src/stream.jl                                                                          584 flushbuffer
     4         0 @TranscodingStreams/src/stream.jl                                                                          593 flushbuffer(::TranscodingStreams.TranscodingStream{GzipCompressor,IOStream}, ::Bool)
  3339         0 @TranscodingStreams/src/stream.jl                                                                          594 flushbuffer(::TranscodingStreams.TranscodingStream{GzipCompressor,IOStream}, ::Bool)
     3         3 @TranscodingStreams/src/stream.jl                                                                            ? read(::TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}, ::Type{UInt8})
     5         5 @TranscodingStreams/src/stream.jl                                                                          302 read(::TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}, ::Type{UInt8})
     3         0 @TranscodingStreams/src/stream.jl                                                                          303 read(::TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}, ::Type{UInt8})
    18         0 @TranscodingStreams/src/stream.jl                                                                          304 read(::TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}, ::Type{UInt8})
    10         2 @TranscodingStreams/src/stream.jl                                                                          307 read(::TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}, ::Type{UInt8})
    16         1 @TranscodingStreams/src/stream.jl                                                                          368 readbytes!
   118         0 @TranscodingStreams/src/stream.jl                                                                          371 readbytes!(::TranscodingStreams.TranscodingStream{GzipDecompressor,IOStream}, ::Array{UInt8,1}, ::Int64)
    20         0 @TranscodingStreams/src/stream.jl                                                                          376 readbytes!(::TranscodingStreams.TranscodingStream{GzipDecompressor,IOStream}, ::Array{UInt8,1}, ::Int64)
     1         1 @TranscodingStreams/src/stream.jl                                                                          381 readbytes!(::TranscodingStreams.TranscodingStream{GzipDecompressor,IOStream}, ::Array{UInt8,1}, ::Int64)
     1         1 @TranscodingStreams/src/stream.jl                                                                          665 readdata!(::IOStream, ::TranscodingStreams.Buffer)
     1         0 @TranscodingStreams/src/stream.jl                                                                          671 readdata!(::IOStream, ::TranscodingStreams.Buffer)
     5         0 @TranscodingStreams/src/stream.jl                                                                          672 readdata!(::IOStream, ::TranscodingStreams.Buffer)
    14         0 @TranscodingStreams/src/stream.jl                                                                          677 readdata!(::Base.GenericIOBuffer{Array{UInt8,1}}, ::TranscodingStreams.Buffer)
     3         0 @TranscodingStreams/src/stream.jl                                                                          427 ready_to_read!
     2         2 @TranscodingStreams/src/stream.jl                                                                            ? unsafe_read(::TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}, ::Ptr{UInt8}, ::UInt64)
     2         2 @TranscodingStreams/src/stream.jl                                                                          351 unsafe_read(::TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}, ::Ptr{UInt8}, ::UInt64)
   986         0 @TranscodingStreams/src/stream.jl                                                                          356 unsafe_read(::TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}, ::Ptr{UInt8}, ::UInt64)
   117         0 @TranscodingStreams/src/stream.jl                                                                          358 unsafe_read(::TranscodingStreams.TranscodingStream{GzipDecompressor,Base.GenericIOBuffer{Array{UInt8,1}}}, ::Ptr{UInt8}, ::UInt64)
  3343         0 @TranscodingStreams/src/stream.jl                                                                          458 unsafe_write(::TranscodingStreams.TranscodingStream{GzipCompressor,IOStream}, ::Ptr{UInt8}, ::UInt64)
     1         0 @TranscodingStreams/src/stream.jl                                                                          459 unsafe_write(::TranscodingStreams.TranscodingStream{GzipCompressor,IOStream}, ::Ptr{UInt8}, ::UInt64)
    12         0 @TranscodingStreams/src/stream.jl                                                                          460 unsafe_write(::TranscodingStreams.TranscodingStream{GzipCompressor,IOStream}, ::Ptr{UInt8}, ::UInt64)
     4         0 @TranscodingStreams/src/stream.jl                                                                          691 writedata!(::IOStream, ::TranscodingStreams.Buffer)
     1         0 @VCFTools/src/convert.jl                                                                                   232 convert_gt(::Type{UInt8}, ::String; model::Symbol, impute::Bool, center::Bool, scale::Bool, trans::Bool, msg::String, save_snp_info::Bool)
   686         0 @VCFTools/src/convert.jl                                                                                   233 convert_gt(::Type{UInt8}, ::String; model::Symbol, impute::Bool, center::Bool, scale::Bool, trans::Bool, msg::String, save_snp_info::Bool)
    65         0 @VCFTools/src/convert.jl                                                                                   243 convert_gt(::Type{UInt8}, ::String; model::Symbol, impute::Bool, center::Bool, scale::Bool, trans::Bool, msg::String, save_snp_info::Bool)
  2604         0 @VCFTools/src/convert.jl                                                                                   244 convert_gt(::Type{UInt8}, ::String; model::Symbol, impute::Bool, center::Bool, scale::Bool, trans::Bool, msg::String, save_snp_info::Bool)
    31        31 @VCFTools/src/convert.jl                                                                                     ? copy_gt_trans!(::Array{Union{Missing, UInt8},2}, ::GeneticVariation.VCF.Reader; model::Symbol, impute::Bool, center::Bool, scale::Bool, msg::String, sampleID::Array{String,1}, record_chr::Array{String,1}, record_pos::Array{Int64,1}, record_ids::Array{Array{String,1},1}, record_ref::Array{String,1}, record_alt::Array{Array{String,1},1})
     1         0 @VCFTools/src/convert.jl                                                                                   145 copy_gt_trans!(::Array{Union{Missing, UInt8},2}, ::GeneticVariation.VCF.Reader; model::Symbol, impute::Bool, center::Bool, scale::Bool, msg::String, sampleID::Array{String,1}, record_chr::Array{String,1}, record_pos::Array{Int64,1}, record_ids::Array{Array{String,1},1}, record_ref::Array{String,1}, record_alt::Array{Array{String,1},1})
  2211         0 @VCFTools/src/convert.jl                                                                                   150 copy_gt_trans!(::Array{Union{Missing, UInt8},2}, ::GeneticVariation.VCF.Reader; model::Symbol, impute::Bool, center::Bool, scale::Bool, msg::String, sampleID::Array{String,1}, record_chr::Array{String,1}, record_pos::Array{Int64,1}, record_ids::Array{Array{String,1},1}, record_ref::Array{String,1}, record_alt::Array{Array{String,1},1})
     1         0 @VCFTools/src/convert.jl                                                                                   152 copy_gt_trans!(::Array{Union{Missing, UInt8},2}, ::GeneticVariation.VCF.Reader; model::Symbol, impute::Bool, center::Bool, scale::Bool, msg::String, sampleID::Array{String,1}, record_chr::Array{String,1}, record_pos::Array{Int64,1}, record_ids::Array{Array{String,1},1}, record_ref::Array{String,1}, record_alt::Array{Array{String,1},1})
     2         0 @VCFTools/src/convert.jl                                                                                   158 copy_gt_trans!(::Array{Union{Missing, UInt8},2}, ::GeneticVariation.VCF.Reader; model::Symbol, impute::Bool, center::Bool, scale::Bool, msg::String, sampleID::Array{String,1}, record_chr::Array{String,1}, record_pos::Array{Int64,1}, record_ids::Array{Array{String,1},1}, record_ref::Array{String,1}, record_alt::Array{Array{String,1},1})
     4         0 @VCFTools/src/convert.jl                                                                                   159 copy_gt_trans!(::Array{Union{Missing, UInt8},2}, ::GeneticVariation.VCF.Reader; model::Symbol, impute::Bool, center::Bool, scale::Bool, msg::String, sampleID::Array{String,1}, record_chr::Array{String,1}, record_pos::Array{Int64,1}, record_ids::Array{Array{String,1},1}, record_ref::Array{String,1}, record_alt::Array{Array{String,1},1})
     9         0 @VCFTools/src/convert.jl                                                                                   160 copy_gt_trans!(::Array{Union{Missing, UInt8},2}, ::GeneticVariation.VCF.Reader; model::Symbol, impute::Bool, center::Bool, scale::Bool, msg::String, sampleID::Array{String,1}, record_chr::Array{String,1}, record_pos::Array{Int64,1}, record_ids::Array{Array{String,1},1}, record_ref::Array{String,1}, record_alt::Array{Array{String,1},1})
     3         0 @VCFTools/src/convert.jl                                                                                   161 copy_gt_trans!(::Array{Union{Missing, UInt8},2}, ::GeneticVariation.VCF.Reader; model::Symbol, impute::Bool, center::Bool, scale::Bool, msg::String, sampleID::Array{String,1}, record_chr::Array{String,1}, record_pos::Array{Int64,1}, record_ids::Array{Array{String,1},1}, record_ref::Array{String,1}, record_alt::Array{Array{String,1},1})
     3         0 @VCFTools/src/convert.jl                                                                                   162 copy_gt_trans!(::Array{Union{Missing, UInt8},2}, ::GeneticVariation.VCF.Reader; model::Symbol, impute::Bool, center::Bool, scale::Bool, msg::String, sampleID::Array{String,1}, record_chr::Array{String,1}, record_pos::Array{Int64,1}, record_ids::Array{Array{String,1},1}, record_ref::Array{String,1}, record_alt::Array{Array{String,1},1})
   178         0 @VCFTools/src/convert.jl                                                                                   164 copy_gt_trans!(::Array{Union{Missing, UInt8},2}, ::GeneticVariation.VCF.Reader; model::Symbol, impute::Bool, center::Bool, scale::Bool, msg::String, sampleID::Array{String,1}, record_chr::Array{String,1}, record_pos::Array{Int64,1}, record_ids::Array{Array{String,1},1}, record_ref::Array{String,1}, record_alt::Array{Array{String,1},1})
     7         0 @VCFTools/src/convert.jl                                                                                   168 copy_gt_trans!(::Array{Union{Missing, UInt8},2}, ::GeneticVariation.VCF.Reader; model::Symbol, impute::Bool, center::Bool, scale::Bool, msg::String, sampleID::Array{String,1}, record_chr::Array{String,1}, record_pos::Array{Int64,1}, record_ids::Array{Array{String,1},1}, record_ref::Array{String,1}, record_alt::Array{Array{String,1},1})
    38         1 @VCFTools/src/convert.jl                                                                                   170 copy_gt_trans!(::Array{Union{Missing, UInt8},2}, ::GeneticVariation.VCF.Reader; model::Symbol, impute::Bool, center::Bool, scale::Bool, msg::String, sampleID::Array{String,1}, record_chr::Array{String,1}, record_pos::Array{Int64,1}, record_ids::Array{Array{String,1},1}, record_ref::Array{String,1}, record_alt::Array{Array{String,1},1})
     7         0 @VCFTools/src/convert.jl                                                                                   179 copy_gt_trans!(::Array{Union{Missing, UInt8},2}, ::GeneticVariation.VCF.Reader; model::Symbol, impute::Bool, center::Bool, scale::Bool, msg::String, sampleID::Array{String,1}, record_chr::Array{String,1}, record_pos::Array{Int64,1}, record_ids::Array{Array{String,1},1}, record_ref::Array{String,1}, record_alt::Array{Array{String,1},1})
    15         0 @VCFTools/src/convert.jl                                                                                   180 copy_gt_trans!(::Array{Union{Missing, UInt8},2}, ::GeneticVariation.VCF.Reader; model::Symbol, impute::Bool, center::Bool, scale::Bool, msg::String, sampleID::Array{String,1}, record_chr::Array{String,1}, record_pos::Array{Int64,1}, record_ids::Array{Array{String,1},1}, record_ref::Array{String,1}, record_alt::Array{Array{String,1},1})
    77         0 @VCFTools/src/convert.jl                                                                                   181 copy_gt_trans!(::Array{Union{Missing, UInt8},2}, ::GeneticVariation.VCF.Reader; model::Symbol, impute::Bool, center::Bool, scale::Bool, msg::String, sampleID::Array{String,1}, record_chr::Array{String,1}, record_pos::Array{Int64,1}, record_ids::Array{Array{String,1},1}, record_ref::Array{String,1}, record_alt::Array{Array{String,1},1})
     3         2 @VCFTools/src/convert.jl                                                                                   185 copy_gt_trans!(::Array{Union{Missing, UInt8},2}, ::GeneticVariation.VCF.Reader; model::Symbol, impute::Bool, center::Bool, scale::Bool, msg::String, sampleID::Array{String,1}, record_chr::Array{String,1}, record_pos::Array{Int64,1}, record_ids::Array{Array{String,1},1}, record_ref::Array{String,1}, record_alt::Array{Array{String,1},1})
    14         0 @VCFTools/src/convert.jl                                                                                   188 copy_gt_trans!(::Array{Union{Missing, UInt8},2}, ::GeneticVariation.VCF.Reader; model::Symbol, impute::Bool, center::Bool, scale::Bool, msg::String, sampleID::Array{String,1}, record_chr::Array{String,1}, record_pos::Array{Int64,1}, record_ids::Array{Array{String,1},1}, record_ref::Array{String,1}, record_alt::Array{Array{String,1},1})
     5         3 @VCFTools/src/convert.jl                                                                                    10 convert_gt
     4         0 @VCFTools/src/convert.jl                                                                                    11 convert_gt
  3356         0 @VCFTools/src/convert.jl                                                                                   232 convert_gt##kw
  2604         0 @VCFTools/src/convert.jl                                                                                   140 (::VCFTools.var"#copy_gt_trans!##kw")(::NamedTuple{(:model, :impute, :center, :scale, :msg, :sampleID, :record_chr, :record_pos, :record_ids, :record_ref, :record_alt),Tuple{Symbol,Bool,Bool,Bool,String,Array{String,1},Array{String,1},Array{Int64,1},Array{Array{String,1},1},Array{String,1},Array{Array{String,1},1}}}, ::typeof(copy_gt_trans!), ::Array{Union{Missing, UInt8},2}, ::GeneticVariation.VCF.Reader)
    34        15 @VCFTools/src/convert.jl                                                                                   194 geno_ismissing
   686         0 @VCFTools/src/gtstats.jl                                                                                   166 countvcflines(::String)
    43        43 @VCFTools/src/gtstats.jl                                                                                     ? gtstats(::GeneticVariation.VCF.Record, ::Nothing)
     8         0 @VCFTools/src/gtstats.jl                                                                                   113 gtstats(::GeneticVariation.VCF.Record, ::Nothing)
    62        18 @VCFTools/src/gtstats.jl                                                                                   115 gtstats(::GeneticVariation.VCF.Record, ::Nothing)
     3         0 @VCFTools/src/gtstats.jl                                                                                   116 gtstats(::GeneticVariation.VCF.Record, ::Nothing)
     2         0 @VCFTools/src/gtstats.jl                                                                                   120 gtstats(::GeneticVariation.VCF.Record, ::Nothing)
    19         0 @VCFTools/src/gtstats.jl                                                                                   121 gtstats(::GeneticVariation.VCF.Record, ::Nothing)
    14         1 @VCFTools/src/gtstats.jl                                                                                   122 gtstats(::GeneticVariation.VCF.Record, ::Nothing)
    16         2 @VCFTools/src/gtstats.jl                                                                                   123 gtstats(::GeneticVariation.VCF.Record, ::Nothing)
    11         0 @VCFTools/src/gtstats.jl                                                                                   134 gtstats(::GeneticVariation.VCF.Record, ::Nothing)
     2         2 @VCFTools/src/gtstats.jl                                                                                   148 hwe(::Int64, ::Int64, ::Int64)
     9         0 @VCFTools/src/gtstats.jl                                                                                   155 hwe(::Int64, ::Int64, ::Int64)
   686         0 @VCFTools/src/gtstats.jl                                                                                   195 nrecords(::String)
     1         0 @VCFTools/src/gtstats.jl                                                                                   180 openvcf(::String, ::String)
Total snapshots: 1406027
