The metabolic world of Escherichia coli is not small
Reverse Engineering of Biological Complexity
Exploring complex networks
Comparative assessment of large-scale data sets of protein-protein interactions.
Navigation in a small world
Random graphs with arbitrary degree distributions and their applications.
Artificial gene networks for objective comparison of analysis  algorithms
The segment polarity network is a robust developmental module
The evolutionary origin of complex features.
Early language acquisition: cracking the speech code.
Organization, development and function of complex brain networks
Motifs in brain networks.
Diffusion on Complex Networks : A way to probe their large scale topological structures
Topological Generalizations of network motifs
Collective dynamics of 'small-world' networks.
Network motifs: simple building blocks of complex networks.
Authoritative sources in a hyperlinked environment
The anatomy of a large-scale hypertextual Web search engine
Spectra and eigenvectors of scale-free networks.
Spectra of random graphs with given expected degrees
Functional discovery via a compendium of expression profiles.
Growing and navigating the small world Web by local content.
The structure of scientific collaboration networks
Classes of small-world networks
"Spectra of ""real-world"" graphs: beyond the semicircle law."
Multistability in the lactose utilization network of Escherichia coli
Protein complexes and functional modules in molecular networks
Finding and evaluating community structure in networks
The structure and function of complex networks
Matching words and pictures
An overview of audio information retrieval
Programmed population control by cellâ€“cell communication and regulated killing
Mobility in collaboration
The sociocognitive psychology of computer-mediated communication: the present and future of technology-based interactions.
Oscillations in NF-{kappa}B Signaling Control the Dynamics of Gene Expression
Design of artificial cell-cell communication using gene and metabolic networks.
Initial sequencing and comparative analysis of the mouse genome.
Dynamic conditional random fields
Large N Field Theories, String Theory and Gravity
The large-scale organization of metabolic networks.
Functional and topological characterization of protein interaction networks.
XML, bioinformatics and data integration.
Systems Biology: A Brief Overview
Computational systems biology
Mapping weblog communities
Understanding mobile contexts
Shortest paths and load scaling in scale-free trees.
Network biology: understanding the cell's functional organization.
The small world of human language.
Metabolomics and systems biology: making sense of the soup.
Genomic analysis of regulatory network dynamics reveals large topological changes
Fluctuations in network dynamics.
Analysis of weighted networks
Inferring Network Mechanisms: The Drosophila melanogaster Protein Interaction Network
Metabolomics by numbers: acquiring and understanding global metabolite data
Functional genomic hypothesis generation and experimentation by a robot scientist
Here is the evidence, now what is the hypothesis? The complementary roles of inductive and hypothesis-driven science in the post-genomic era
High-throughput classification of yeast mutants for functional genomics using metabolic footprinting.
A systematic approach to modeling, capturing, and disseminating proteomics experimental data.
Schemes of flux control in a model of Saccharomyces cerevisiae glycolysis.
Motifs, modules and games in bacteria.
Network dynamics and cell physiology
A synthetic oscillatory network of transcriptional regulators.
Construction of a genetic toggle switch in Escherichia coli.
Engineering stability in gene networks by autoregulation.
A functional genomics strategy that uses metabolome data to reveal the phenotype of silent mutations.
Document co-organization in an online knowledge community
Inferring Web Communities from Link Topology
Footprints: History-Rich Tools for Information Foraging
Information foraging
Exploiting generative models in discriminative classifiers
Spreading Activation Models for Trust Propagation
Design and implementation of microarray gene expression markup language (MAGE-ML).
Network reachability of real-world contact sequences
A Theory of Problem-Solving Behavior
Sticky Information and the Locus of Problem Solving: Implications for Innovation
Information diffusion through blogspace
Problems with Fitting to the Power-Law Distribution
The shortest path to complex networks
Coevolution of dynamical states and interactions in dynamic networks
Coarse-Graining and Self-Dissimilarity of Complex Networks
MIPS: a database for genomes and protein sequences
MIPS: analysis and annotation of proteins from whole genomes
Evolving a Stigmergic Self-Organized Data-Mining
Random Networks with Tunable Degree Distribution and Clustering
The statistical mechanics of networks
Bridging Epistemologies: The Generative Dance between Organizational Knowledge and Organizational Knowing
SGD: Saccharomyces Genome Database.
On the uniform generation of random graphs with prescribed degree sequences
How can we think the complex?
What's in a name?
Zipf's law and the creation of musical context
Modeling the evolution of weighted networks
Social Structure and Opinion Formation
Conservation and Evolution of Cis-Regulatory Systems in Ascomycete Fungi
Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura.
The Economic Implications of Learning by Doing
Shannon Information and Kolmogorov Complexity
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
EDUTELLA: A P2P Networking Infrastructure Based on RDF
The long memory of the efficient market
Complexity vs stability in small-world networks
The spatial structure of networks
Citation Statistics From More Than a Century of Physical Review
Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2âˆ’Î”Î”CT Method
Document Similarity Using a Phrase Indexing Graph Model
From Kuramoto to Crawford: exploring the onset of synchronization in populations of coupled oscillators
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models
A Fast Elitist Non-Dominated Sorting Genetic Algorithm for Multi-Objective Optimization: NSGA-II
The similarity metric
Introduction to Random Boolean Networks
A Generalized Approach to Complex Networks
Generation of uncorrelated random scale-free networks
Robustness in bacterial chemotaxis.
Global prevalence of diabetes: estimates for the year 2000 and projections for 2030.
What makes biochemical networks tick?
Robustness of Cellular Functions
The Protein Folding Network
Efficient sampling algorithm for estimating subgraph concentrations and detecting network motifs
Design as bricolage: anthropology meets design thinking
Semantic blogging and decentralized knowledge management
Serendipity and information seeking: an empirical study
Re-appraising information seeking behaviour in a digital environment: Bouncers, checkers, returnees and the like
Detection of multistability, bifurcations, and hysteresis in a large class of biological positive-feedback systems.
Emergence of Complex Dynamics in a Simple Model of Signaling Networks
Semantic Web services
GenomeÃ¢Â€Âwide detection of tissueÃ¢Â€Âspecific alternative splicing in the human transcriptome
Inferring quantitative models of regulatory networks from expression data.
Using Bayesian networks to analyze expression data.
Combining location and expression data for principled discovery of genetic regulatory network models.
Using graphical models and genomic expression data to statistically validate models of genetic regulatory networks.
Advances to Bayesian network inference for generating causal networks from observational biological data
A survey of approaches to automatic schema matching
C-OWL: Contextualizing ontologies
Integrated Semantic-Syntactic Video Modeling for Search and Browsing
Understanding and Using Context
Time as essence for photo browsing through personal digital libraries
Automatic organization for digital photographs with geographic coordinates
Two supervised learning approaches for name disambiguation in author citations
Toward an Understanding of the Motivation of Open Source Software Developers
Bibliometrics and beyond: some thoughts on web-based citation analysis
Adding semantics to web services standards
Analysis of a very large web search engine query log
Relevant term suggestion in interactive web search based on contextual information in query session logs
Agglomerative clustering of a search engine query log
Region-Based Memory Management
Language Support for Regions
A Syntactic Approach to Type Soundness
Expertise recommender: a flexible recommendation system and architecture
FotoFile: a consumer multimedia organization and retrieval system
Composable and compilable macros:: you want it when?
Assessing Agreement on Classification Tasks: The Kappa Statistic
A deoxyribozyme-based molecular automaton
Refactoring object-oriented frameworks
Imperative Functional Programming
Meeting the needs of remote library users
Library weblogs
Five reasons for scenario-based design
CiteSeer-API: towards seamless resource location and interlinking for digital libraries
Modeling network dynamics: the lac operon, a case study
Library instruction and information literacy - 2003
Robust perfect adaptation in bacterial chemotaxis through integral feedback control
Information Literacy: The Meta-Competency of the Knowledge Economy? An Exploratory Paper
Turning techno-savvy into info-savvy: authentically integrating information literacy into the college curriculum
Research agenda for library instruction and information literacy
Information-saturated yet ignorant: information mediation as social empowerment in the knowledge economy
Case-based, problem-based learning - Information literacy for the real world
Information and digital literacies: a review of concepts
Integrating information literacy using problem-based learning
Robustness in simple biochemical networks.
Association of genes to genetically inherited diseases using data mining
The evolution of Lisp
Template meta-programming for Haskell
Revised report on the algorithmic language scheme
Proper tail recursion and space efficiency
Control flow analysis in scheme
The essence of functional programming
Contracts for higher-order functions
Units: cool modules for HOT languages
A call-by-need lambda calculus
On the expressive power of programming languages
Catching bugs in the web of program invariants
Synthesizing Object-Oriented and Functional Design to Promote Re-Use
Modular object-oriented programming with units and mixins
How to design programs: an introduction to programming and computing
Macros as multi-stage computations: type-safe, generative, binding macros in MacroML
A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks
Metabolic pathways in the post-genome era.
A hybrid approach for searching in the semantic web
Adaptive web search based on user profile constructed without any effort from users
A Corpus-Based Approach to Language Learning
N-Gram-Based Text Categorization
Blogging by the rest of us
The use of popular science articles in teaching scientific literacy
Assessing the Effects of Library Instruction
Using Blackboard in Library Instruction: Addressing the Learning Styles of Generations X and Y
TextTiling: segmenting text into multi-paragraph subtopic passages
On Defining Library and Information Science as Applied Philosophy of Information
Embodying information systems: the contribution of phenomenology
Learning to cluster web search results
A common open representation of mass spectrometry data and its application to proteomics research
Making sense of it all: bacterial chemotaxis.
Mobile Ambients
Generalized Venn diagrams: a new method of visualizing complex genetic set relations.
Integrated Genomic and Proteomic Analyses of a Systematically Perturbed Metabolic Network
Transcriptional Regulatory Networks in Saccharomyces cerevisiae
Programmable Syntax Macros
Network structure and the diffusion of knowledge
Gene regulatory network growth by duplication
A proposed framework for the description of plant metabolomics experiments and their results
Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein
Foundations for the study of software architecture
Locationâ€Aided Routing (LAR) in mobile ad hoc networks
Genetic networks with canalyzing Boolean rules are always stable
Patterns of Search: Analyzing and Modeling Web Query Refinement
Traits: Composable Units of Behavior
Efficient Identification of Web Communities
Real life, real users, and real needs: a study and analysis of user queries on the web
The â€œGreenâ€ and â€œGoldâ€ Roads to Open Access: The Case for Mixing and Matching
Distance Teaching: Comparing Two Online Information Literacy Courses
C4.5: programs for machine learning
Growing a language
Packrat Parsing: Simple, Powerful, Lazy, Linear Time
Parsing expression grammars: a recognition-based syntactic foundation
Phobos: A front-end approach to extensible compilers
Searching the World Wide Web
The PageRank Citation Ranking: Bringing Order to the Web
Random Boolean network models and the yeast transcriptional network
Organizing Programs Without Classes
Phylogenetic estimation of context-dependent substitution rates by maximum likelihood.
Types and programming languages
The derivative of a regular type is its type of one-hole contexts
Resource usage analysis
From system F to typed assembly language
Mining specifications
DSL implementation using staging and monads
Distributed snapshots: determining global states of distributed systems
Dimensions of relevance
Open Rating Systems
Propagation of Trust and Distrust
A conceptual framework and a toolkit for supporting the rapid prototyping of context-aware applications
Relevance Feedback Techniques in Interactive Content-Based Image Retrieval
Image retrieval: current techniques, promising directions and open issues
GroupLens: An Open Architecture for Collaborative Filtering of Netnews
Letizia: An Agent That Assists Web Browsing
Simulating protein evolution in sequence and structure space
Scatter/Gather: A Cluster-based Approach to Browsing Large Document Collections
Data clustering: a review
Initialization of Iterative Refinement Clustering Algorithms
Mining Association Rules between Sets of Items in Large Databases
The Pfam protein families database
Aibo's first words : The social learning of language and meaning
Biological robustness.
DENIM: finding a tighter fit between tools and practice for Web site design
Network motifs in integrated cellular networks of transcriptionâ€“regulation and proteinâ€“protein interaction
Software infrastructure for natural language processing
Virtual screening of chemical libraries
Navigating chemical space for biology and medicine.
Natural and engineered nucleic acids as tools to explore biology
Chemical space and biology
Informed consent for population-based research involving genetics.
The Bayou architecture: Support for data sharing among mobile users
Taking email to task: the design and evaluation of a task management centered email tool
Collection development for new librarians: Advice from the trenches
Fast Algorithms for Mining Association Rules
Placing Knowledge Management in Context
Knowledge Management: The Benefits and Limitations of Computer Systems
Chord: a scalable peer-to-peer lookup protocol for internet applications
The chatty web: emergent semantics through gossiping
Evolution of transcription factors and the gene regulatory network in Escherichia coli.
Natural image statistics and efficient coding
The `Independent Components' of Natural Scenes are Edge Filters
Sparse coding with an overcomplete basis set: A strategy employed by V
Dynamic Typing as Staged Type Inference
Languages of the Future
THE ENGINEERING OF GENE REGULATORY NETWORKS
Mathematics Is Biology's Next Microscope, Only Better; Biology Is Mathematics' Next Physics, Only Better
The Many Faces of Publish/Subscribe
Filtering algorithms and implementation for very fast publish/subscribe systems
Building programmable jigsaw puzzles with RNA.
Modeling and performance analysis of BitTorrent-like peer-to-peer networks
A scalable content-addressable network
Tapestry: An Infrastructure for Fault-tolerant Wide-area Location and
OceanStore: an architecture for global-scale persistent storage
Consistent hashing and random trees: distributed caching protocols for relieving hot spots on the World Wide Web
Peer-to-Peer Architecture Case Study: Gnutella Network
Freenet: a distributed anonymous information storage and retrieval system
Placing search in context: the concept revisited
Statistical analysis of domains in interacting protein pairs.
Context in Web Search
Simple, fast, and practical non-blocking and blocking concurrent queue algorithms
Term identification in the biomedical literature
How did alternative splicing evolve?
The Google Similarity Distance
Reinforcement Learning: A Survey
Information-seeking on the Web:  Effects of user and task variables
The LCA Problem Revisited
Science literacy and academic identity formulation
Developing views of nature of science in an authentic context: An explicit approach to bridging the gap between nature of science and scientific inquiry
Accurate multiplex gene synthesis from programmable DNA microchips
Representing monads
An Introduction to Dependent Type Theory
Faking it---simulating dependent types in Haskell
Domain specific embedded compilers
Dependent Types in Practical Programming
The Impact of the Lambda Calculus on Logic and Computer Science
Dynamic Typing in a Statically Typed Language
Type Classes with Functional Dependencies
Lazy functional state threads
What are principal typings and what are they good for?
On Understanding Types, Data Abstraction, and Polymorphism
Inheritance is not subtyping
The price dynamics of common trading strategies
WormBase: a comprehensive data resource for Caenorhabditis biology and genomics.
A repository of our own: the E-LIS e-prints archive
Using terminological feedback for web search refinement: a log-based study
A User-Centred Approach to Functions in Excel
Type Classes in Haskell
How to make ad-hoc polymorphism less ad hoc
Representing Control: A study of the CPS transformation
Views: a way for pattern matching to cohabit with data abstraction
Stochastic lambda calculus and monads of probability distributions
The Alternative Splicing Gallery (ASG): bridging the gap between genome and transcriptome
Splicing graphs and EST assembly problem
OAI-P2P: A Peer-to-Peer Network for Open Archives
Decoherence, einselection, and the quantum origins of the classical
LANDMARC: Indoor Location Sensing Using Active RFID
Wireless broadband drivers and their social implications
A tutorial on support vector regression
Multimodel Inference
Greed and grievance in civil war
The future of eLearning
Multimodal Video Indexing: A Review of the State-of-the-art
Active Sampling for Class Probability Estimation and Ranking
Learning to Decode Cognitive States from Brain Images
As We May Think
Not just Piaget; not just Vygotsky, and certainly not Vygotsky as alternative to Piaget
Scholarly communication in the digital environment: what do authors want?
A Model-Based Background Adjustment for Oligonucleotide Expression Arrays
Ubiquitous computing
Speaking while monitoring addressees for understanding
The Network Paradigm in Organizational Research: A Review and Typology
Beyond Independent Components: Trees and Clusters
Transaction cost determinants and ownership-based entry mode choice: a meta-analytical review
Exploratory Data Analysis for Complex Models
Default-Mode Activity during a Passive Sensory Task: Uncoupled from Deactivation but Impacting Activation
Mathematical modal logic: A view of its evolution
The relationships of communicator style, personality-based learning style, and classroom community among online graduate students
Copyrights and Copywrongs: The Rise of Intellectual Property and How it Threatens Creativity
Collaborating with writing tools - An instrumental perspective on the problem of computer-supported collaborative activities
The Concept of Information Overload: A Review of Literature from Organization Science, Accounting, Marketing, MIS, and Related Disciplines
Higher Education Management and Policy: Volume 16 Issue 2 Complete Edition
Disclosure of Genetic Information Obtained Through Research
The tragedy of the digital commons
Becoming an Online Teacher: Adapting to a Changed Environment for Teaching and Learning in Higher Education
Why environmental scientists are becoming Bayesians
Scale and Translation Invariant Collaborative Filtering Systems
Tropical Forest Fragments Enhance Pollinator Activity in Nearby Coffee Crops
Analyzing student interactions and meaning construction in computer bulletin board discussions
A Semantic Web Primer
Regulation of RNA Polymerase II Transcription by Sequence-Specific DNA Binding Factors
Seeing Is Believing - The Bicoid Morphogen Gradient Matures
How to Talk About the Body? the Normative Dimension of Science Studies
Circular binary segmentation for the analysis of array-based DNA copy number data.
GO::TermFinder-open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes
MedlineR: an open source library in R for Medline literature data mining.
DAGchainer: a tool for mining segmental genome duplications and synteny
Discovering patterns to extract protein-protein interactions from full texts.
Modeling interactome: scale-free or geometric?
Blogs and Wikis Are Valuable Software Tools for Communication Within Research Groups
A review of routing protocols for mobile ad hoc networks
Recursion is a computational effect
A Short Survey of Noncommutative Geometry
An actor-network critique of community in higher education: implications for networked learning
Designs for network learning: a communities of practice perspective
Examining the dynamics of networked e-learning groups and communities
Consensus, difference and 'multiple communities' in networked learning
Subtyping Recursive Types
Theorems for Free!
Codata and Comonads in Haskell
Power laws, Pareto distributions and Zipf's law
The marriage of effects and monads
Adoption and focus: practical linear types for imperative programming
Linear types can change the world!
A Taste of Linear Logic
Once upon a type
Social presence in distributed group environments: the role of social identity
The Mathematical Development of Set Theory from Cantor to Cohen
Autonomous Gossiping: A self-organizing epidemic algorithm for selective
RoMEO studies 1: the impact of copyright ownership on academic author self-archiving
Clustering data streams: Theory and practice
Data Streams: Algorithms and Applications
Continuously Adaptive Continuous Queries over Streams
Adaptive query processing: A survey
Aurora: a new model and architecture for data stream management
Query Languages and Data Models for Database
Queryfree news search
Random early detection gateways for congestion avoidance
A measurement study of the bittorrent peer-to-peer file-sharing system
Analyzing peer-to-peer traffic across large networks
The Small-World Phenomenon: An Algorithmic Perspective
Purely functional data structures
Modular Domain Specific Languages and Tools
Domain-Specific Languages: An Annotated Bibliography
Compiling Embedded Languages
Notable design patterns for domain-specific languages
Monadic Parser Combinators
Organizational Learning
Predicate Dispatching: A Unified Theory of Dispatch
Concurrent Haskell
Open Access Is Only Part of the Story
The Shifting Sands of Open Access Publishing, a Publisher's View
A Not-for-Profit Publisher's Perspective on Open Access
Delivery, Management and Access Model for E_prints and Open Access Journals
Open Access: Science Publishing as Science Publishing Should Be
The Access/Impact Problem and the Green and Gold Roads to Open Access
Hourly analysis of a very large topically categorized web query log
Probabilistic query expansion using query logs
Assessing computational tools for the discovery of transcription factor binding sites
Document clustering by concept factorization
Modular epistasis in yeast metabolism.
The 'evolvability' of promiscuous protein functions.
Delivering Semantic Web Services
Constraining Theories of Embodied Cognition
Biological networks.
Exploring the diversity of complex metabolic networks.
Affective computing
Complexity, Self-Organization and Selection
HADDOCK: a protein-protein docking approach based on biochemical or biophysical information.
Guided Docking Approaches to Structure-Based Design and Screening
Kademlia: A peer-to-peer information system based on the XOR metric
Topology of biological networks and reliability of information processing
The familiar stranger: anxiety, comfort, and play in public places
Tap: a semantic web platform
The Semantic Web: The Roles of XML and RDF
On the notion of inheritance
A Maximum Entropy Approach to Natural Language Processing
Breaking and fixing the Needham-Schroeder public-key protocol using FDR
An extensive empirical study of feature selection metrics for text classification
Probabilistic Boolean networks: a rule-based uncertainty model  for gene regulatory networks
Neuroethics: the practical and the philosophical
Simultaneous determination of protein structure and dynamics
Studying cooperation and conflict between authors with <i>history flow</i> visualizations
Self-assembling hypertexts, weblogs, and wikis
Asynchronous collaborative writing through annotations
Principles of docking: An overview of search algorithms and a guide to scoring functions.
Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function
Blogging as social activity, or, would you let 900 million people read your diary?
Case-based reasoning: foundational issues, methodological variations, and system approaches
The location stack: A layered model for location in ubiquitous computing
Location Systems for Ubiquitous Computing
The challenges of user-centered design and evaluation for infrastructure
WebBase: a repository of Web pages
Indexing by Latent Semantic Analysis
Haploview: analysis and visualization of LD and haplotype maps
Gene name ambiguity of eukaryotic nomenclatures
Outcome signature genes in breast cancer: is there a unique set?
Designing mobile technologies to support co-present collaboration
Conservation Biogeography: assessment and prospect
Neural Topography and Content of Movement Representations
Towards Flexible Teamwork
An Eulerian path approach to DNA fragment assembly
Spectral learning
Human Category Learning 
Brain Organization for Music Processing
Integrating ethics and science in the International HapMap Project.
De novo repeat classification and fragment assembly.
Interspersed repeats and other mementos of transposable elements in mammalian genomes.
A measure of betweenness centrality based on random walks
Mixing patterns in networks
Spectral biclustering of microarray data: coclustering genes and conditions.
Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution.
The modular architecture of proteinÃ¢Â€Â“protein binding interfaces
Concept Decompositions for Large Sparse Text Data Using Clustering
Wizard of Oz prototyping of computer vision based action games for children
Functional imaging with cellular resolution reveals precise micro-architecture in visual cortex.
Evolutionary dynamics on graphs
Emergence of scaling in random networks
Test input generation with java PathFinder
Symbolic execution and program testing
Generalized symbolic execution for model checking and testing
Random Graph Models of Social Networks
Estimating mutual information.
Why social networks are different from other types of networks.
Assortative mixing in networks.
Community structure in social and biological networks
Scaling and percolation in the small-world network model.
Are randomly grown graphs really random?
Scientific collaboration networks. I. Network construction and fundamental results.
Scientific collaboration networks. II. Shortest paths, weighted networks, and centrality.
Textpresso: An Ontology-Based Information Retrieval and Extraction System for Biological Literature
 Case-based medical informatics
ArrayExpress--a public repository for microarray gene expression data at the EBI
Entrez Gene: gene-centered information at NCBI
Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders.
The Molecular Biology Database Collection: 2005 update
STRING: known and predicted protein-protein associations, integrated and transferred across organisms
Reactome: a knowledgebase of biological pathways.
The Biomolecular Interaction Network Database and related tools 2005 update
The PANTHER database of protein families, subfamilies, functions and pathways.
E-MSD: an integrated data resource for bioinformatics
The Universal Protein Resource (UniProt).
Rfam: annotating non-coding RNAs in complete genomes.
Monad transformers and modular interpreters
Comprehending Monads
Monads for functional programming
The Open Agent Architecture: a framework for building distributed software systems
Adapting Golog for composition of semantic Web services
A correspondence between continuation passing style and static single assignment form
The essence of compiling with continuations
Rabbit: A Compiler for Scheme
Effective Web Crawling
Having a BLAST with bioinformatics (and avoiding BLASTphemy).
Deleting species from model food webs
Topological structure and interaction strengths in model food webs
A Sense of Self for Unix Processes
Data mining approaches for intrusion detection
Tracking Down Software Bugs Using Automatic Anomaly Detection
Insertion, Evasion, and Denial of Service: Eluding Network Intrusion Detection
Computer immunology
Learning the parts of objects by non-negative matrix factorization.
Machine learning in automated text categorization
External memory algorithms and data structures: dealing with massive data
Searching in metric spaces
Searching in high-dimensional spaces: Index structures for improving the performance of multimedia databases
Trust in recommender systems
Collaboration Analysis in Recommender Systems using Social Networks
The impact of web-logs (blogs) on student perceptions of isolation and alienation in a web-based distance-learning environment
Trust-Aware Collaborative Filtering for Recommender Systems
Uncertainty in predictions of the climate response to rising levels of greenhouse gases
Self-similarity of complex networks
A measure of similarity between graph vertices
The economics of ideas and intellectual property.
Visual speech speeds up the neural processing of auditory speech.
The Byzantine Generals Problem
Texture classification: Are filter banks necessary
Human-Computer Interaction: Psychological Aspects of the Human Use of Computing
Human-Computer Interaction: Psychology as a Science of Design
iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions.
Simulation tools for biochemical networks: evaluation of performance and usability.
A Bayesian approach to reconstructing genetic regulatory networks with hidden factors
Software Agents
Cognitive Principles of Multimedia Learning: The Role of Modality and Contiguity
Aids to computer-based multimedia learning
The promise of multimedia learning: using the same instructional design methods across different media
Federated database systems for managing distributed, heterogeneous, and autonomous databases
Intelligent Agents: Theory and Practice
Protein flexibility in ligand docking and virtual screening to protein kinases.
Glide:â€‰ A New Approach for Rapid, Accurate Docking and Scoring. 1. Method and Assessment of Docking Accuracy
Semantic integration: a survey of ontology-based approaches
Power-Law Distribution of the World Wide Web
Emergent semantics
Automatic Meaning Discovery Using Google
The open archives initiative: building a low-barrier interoperability framework
Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs.
Characterizing browsing strategies in the World-Wide Web
Supporting Social Navigation on the World-Wide Web
Using information scent to model user information needs and actions and the Web
The scent of a site: a system for analyzing and predicting information scent, usage, and usability of a Web site
Composition Patterns: An Approach to Designing Reusable Aspects
Early Aspects: A Model for Aspect-Oriented Requirements Engineering
Labeling images with a computer game
A representation of the hazard rate of elapsed time in macaque area LIP.
Matching Behavior and the Representation of Value in the Parietal Cortex
Markov Games as a Framework for Multi-Agent Reinforcement Learning
Learning to Predict by the Methods of Temporal Differences
Model-Driven Data Acquisition in Sensor Networks
Complex queries in dht-based peer-to-peer networks
Neural correlates of decision variables in parietal cortex.
Internet indirection infrastructure
Self: The power of simplicity
Neural computations that underlie decisions about sensory stimuli.
The Blocker Tag: Selective Blocking of RFID Tags for Consumer Privacy
An introduction to quantum computing for non-physicists
Spike Transmission and Synchrony Detection in Networks of GABAergic Interneurons
Generalized Integrate-and-Fire Models of Neuronal Activity Approximate Spike Trains of a Detailed Model to a High Degree of Accuracy
Advances in dataflow programming languages
Protein docking using a genetic algorithm
Building interpreters by composing monads
Responses of neurons in primary and inferior temporal visual cortices to natural scenes.
The notion of dimension in geometry and algebra
Analysis of the increase and decrease algorithms for congestion avoidance in computer networks
Congestion Avoidance and Control
Principles of programming with complex objects and collection types
A neuroeconomics approach to inferring utility functions in sensorimotor control.
Position specific variation in the rate of evolution in transcription factor binding sites
Interaction network containing conserved and essential protein complexes in Escherichia coli.
Metagenes and molecular pattern discovery using matrix factorization
Refractoriness and Neural Precision
Maximum likelihood estimation of a stochastic integrate-and-fire neural encoding model.
A Spike-Train Probability Model
The Time-Rescaling Theorem and Its Application to Neural Spike Train Data Analysis
Multi-Robot Task Allocation: Analyzing the Complexity and Optimality of Key Architectures
Studying Cooperation and Conflict between Authors
i d e a n t: A del.icio.us study
Activity in posterior parietal cortex is correlated with the relative subjective desirability of action.
Representation of time by neurons in the posterior parietal cortex of the macaque.
So How Does the Mind Work?
Featherweight Java: A Minimal Core Calculus for Java and GJ
Stochastic nature of precisely timed spike patterns in visual system neuronal responses.
Attention and the subjective expansion of time
Response of neurons in the lateral intraparietal area during a combined visual discrimination reaction time task.
Obol: integrating language and meaning in bio-ontologies
Neural control of voluntary movement initiation.
Neural basis of a perceptual decision in the parietal cortex (area LIP) of the rhesus monkey.
A Role for Neural Integrators in Perceptual Decision Making
Psychology and neurobiology of simple decisions.
Neural basis of deciding, choosing and acting.
Neural correlates of decision processes: neural and mental chronometry.
How to Tell When Simpler, More Unified, or Less Ad Hoc Theories Will Provide More Accurate Predictions
Neural computation of log likelihood in control of saccadic eye movements.
The influence of urgency on decision time.
Coordinated Reactivation of Distributed Memory Traces in Primate Neocortex
A cellular mechanism of reward-related learning.
Phase locking of single neuron activity to theta oscillations during working memory in monkey extrastriate visual cortex.
Folksonomies - Cooperative Classification and Communication Through Shared Metadata
Dynamics of the hippocampal ensemble code for space
Reactivation of hippocampal ensemble memories during sleep.
Temporal structure in neuronal activity during working memory in macaque parietal cortex.
Automatic Methods for Predicting Functionally Important Residues
A common reference frame for movement plans in the posterior parietal cortex.
The Protein Kinase Complement of the Human Genome
Information processing with population codes.
Computational approaches to sensorimotor transformations
Efficient computation and cue integration with noisy population codes.
Decoding neuronal spike trains: how important are correlations?
Retinal ganglion cells act largely as independent encoders.
Inference and computation with population codes.
MapReduce: Simplified Data Processing on Large Clusters
Subject-oriented programming: a critique of pure objects
Stretched exponential distributions in nature and economy: â€œfat tailsâ€ with characteristic scales
Active Appearance Models
Synergy, Redundancy, and Independence in Population Codes
Noise, neural codes and cortical organization.
Redundancy reduction revisited.
Scale-free networks from varying vertex intrinsic fitness.
Vertex intrinsic fitness: how to produce arbitrary scale-free networks.
Empiricism, rationalism and positivism in library and information science
The nature of human altruism.
Altruistic punishment in humans
Dynamic Analysis of Neural Encoding by Point Process Adaptive Filtering
Understanding user goals in web search
A robust layered control system for a mobile robot
Cellular mechanisms contributing to response variability of cortical neurons in vivo.
Reliability of spike timing in neocortical neurons
The Variable Discharge of Cortical Neurons: Implications for Connectivity, Computation, and Information Coding
The highly irregular firing of cortical cells is inconsistent with temporal integration of random EPSPs
 BBC News 
The part-time parliament
How to Build a Highly Available System Using Consensus
RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees.
Natural signal statistics and sensory gain control
NATURAL IMAGE STATISTICS AND NEURAL REPRESENTATION
A Subscribable Peer-to-Peer RDF Repository for Distributed Metadata Management
Koorde: A simple degree-optimal distributed hash table
Chord: A Scalable Peer-To-Peer Lookup Service for Internet Applications
Visual Information Retrieval
Content-Based Classification, Search, and Retrieval of Audio
Indivisible labor and the business cycle
The Bargaining Problem
Perfect Equilibrium in a Bargaining Model
Revisiting the paxos algorithm
Foundations of Swarm Intelligence: From Principles to Practice
TimeSpace: activity-based temporal visualisation of personal information spaces
Aging and Death in an Organism That Reproduces by Morphologically Symmetric Division
Neutral microepidemic evolution of bacterial pathogens
A tutorial on learning with bayesian networks
The Bayesian brain: the role of uncertainty in neural coding and computation
Bayesian integration in sensorimotor learning
Highly Conserved Non-Coding Sequences Are Associated with Vertebrate Development
Unreliable failure detectors for reliable distributed systems
Counting probability distributions: differential geometry and model selection.
The neighbor-joining method: a new method for reconstructing phylogenetic trees.
Measuring genome evolution
Writing a research paper
Spike train dynamics predicts theta-related phase precession in hippocampal pyramidal cells
Toward a basic framework for webometrics
Learning Bayesian Networks: The Combination of Knowledge and Statistical Data
A Bayesian Method for the Induction of Probabilistic Networks from Data
The Value of Reputation on eBay: A Controlled Experiment
Goal-Oriented Requirements Engineering: A Guided Tour
Cognitive design elements to support the construction of a mental model during software exploration
Risk, ambiguity, and the Savage axioms
Gender, Identity, and Language Use in Teenage Blogs
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.
Improved microbial gene identification with GLIMMER
The PROSITE database, its status in 2002.
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.
Microbial gene identification using interpolated Markov models
On the minimal synchronism needed for distributed consensus
The weakest failure detector for solving consensus
Consensus in the presence of partial synchrony
Conditional Independence in Statistical Theory
Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments.
Detection of parallel functional modules by comparative analysis of genome sequences
Functional annotation and network reconstruction through cross-platform integration of microarray data
The genetic theory of adaptation: a brief history.
Genome-wide association studies: theoretical and practical concerns.
Genome-wide association studies for common diseases and complex traits
Semantic email: theory and applications
Social Dilemmas: The Anatomy of Cooperation
On the criteria to be used in decomposing systems into modules
Flash: An efficient and portable Web server
Fast algorithm for detecting community structure in networks
Finding community structure in very large networks
NP-complete Problems and Physical Reality
Formal Ontology and Information Systems
Kernel Independent Component Analysis
Local graph alignment and motif search in biological networks.
A Translation Approach to Portable Ontology Specifications
OurGrid: An approach to easily assemble grids with equitable resource sharing
Discouraging Free Riding in a Peer-to-Peer CPUSharing Grid
Inferring dynamic architecture of cellular networks using time series of gene expression, protein and metabolite data.
Control of internal and external noise in genetic regulatory networks.
The UNIX TimeSharing System
A Framework for Representing Knowledge
A survey of medical image registration
Effective erasure codes for reliable computer communication protocols
Mining and summarizing customer reviews
Does Training in Second-Language Word Recognition Skills Affect Reading Comprehension? An Experimental Study
Decoding by Linear Programming
Ontologies: a silver bullet for knowledge management and electronic commerce
The use and analysis of microarray data.
Navigating gene expression using microarrays [mdash] a technology review
Data Mining
Probability density estimation for the interpretation of neural population codes
Tuning curve sharpening for orientation selectivity: coding efficiency and the impact of correlations
Role of experience and oscillations in transforming a rate code into a temporal code.
Blending by Blogging: weblogs in blended learning initiatives
Anomaly detection of web-based attacks
Diffusion of renewable energy technologies--barriers and stakeholders' perspectives
Humans integrate visual and haptic information in a statistically optimal fashion.
Experience-dependent asymmetric shape of hippocampal receptive fields.
Coordinated interactions between hippocampal ripples and cortical spindles during slow-wave sleep.
Memory of sequential experience in the hippocampus during slow wave sleep.
Temporally structured replay of awake hippocampal ensemble activity during rapid eye movement sleep.
An architecture for biological information extraction and representation.
A Dynamic Model of Social Network Formation
Whole-Genome Patterns of Common DNA Variation in Three Human Populations
Culture and the Self: Implications for Cognition, Emotion, and Motivation
Prospect Theory: An Analysis of Decision under Risk
Bee foraging in uncertain environments using predictive hebbian learning.
An Intrusion-Detection Model
Detecting Intrusions using System Calls: Alternative Data Models
Intrusion Detection via Static Analysis
Testing Intrusion detection systems: a critique of the 1998 and 1999 DARPA intrusion detection system evaluations as performed by Lincoln Laboratory
The Strength of Weak Ties
Information processing in the primate visual system: an integrated systems perspective
A framework for defining logics
A new notation for arrows
Generalising monads to arrows
A Point Process Framework for Relating Neural Spiking Activity to Spiking History, Neural Ensemble, and Extrinsic Covariate Effects
Generalized Additive Models
Specificity and Stability in Topology of Protein Networks
Scale-free brain functional networks
The Semantic Web
Business Process Execution Language for Web Services version 1.1
Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites
The framing of decisions and the psychology of choice
A generic protein purification method for protein complex characterization and proteome exploration.
Judgment under Uncertainty: Heuristics and Biases
Mfold web server for nucleic acid folding and hybridization prediction
Scrap your boilerplate: a practical design pattern for generic programming
Generics for the masses
Scrap more boilerplate: reflection, zips, and generalised casts
Associated types with class
Ownership types for object encapsulation
Basic local alignment search tool.
A computer perspective of membranes: molecular dynamics studies of lipid bilayer systems.
General conditions for predictivity in learning theory.
A Taxonomy of Incentive Patterns - the Design Space of Incentives for Cooperation
How Social Structure Improves Distributed Reputation Systems - Three Hypotheses
Inferring Cellular Networks Using Probabilistic Graphical Models
OWL Web Ontology Language Overview
Dynamo: a transparent dynamic optimization system
Peer-to-Peer Communication Across Network Address Translators
Unraveling the Web services web: an introduction to SOAP, WSDL, and UDDI
Global mapping of the yeast genetic interaction network.
Finders, keepers? The present and future perfect in support of personal information management
Modeling Multilevel Data Structures
The psychology of personal information management
A probabilistic view of gene function.
Learning Bayesian Network Structure from Massive Datasets: The ''Sparse Candidate'' Algorithm
Expert Finding Systems for Organizations: Problem and Domain Analysis and the DEMOIR Approach
Searching social networks
A Multi-agent System for Collaborative Bookmarking
Indeterminacy in brain and behavior.
Neuroeconomics: The Consilience of Brain and Decision
The neurobiology of visual-saccadic decision making.
Making choices: the neurophysiology of visual-saccadic decision making.
Neural coding of basic reward terms of animal learning theory, game theory, microeconomics and behavioural ecology.
The Eyes Have It: A Task by Data Type Taxonomy for Information Visualizations
The challenge of information visualization evaluation
A unified taxonomic framework for information visualization
Synchrony-dependent propagation of firing rate in iteratively constructed networks in vitro
Tracking evolving communities in large linked networks.
Robotics-Based Location Sensing Using Wireless Ethernet
Analysis of a campus-wide wireless network
A Transport Layer Approach for Achieving Aggregate Bandwidths on Multi-Homed Mobile Hosts
Ariadne: a secure on-demand routing protocol for ad hoc networks
A problem-oriented classification of visualization techniques
Think Globally, Fit Locally: Unsupervised Learning of Low Dimensional Manifolds.
Limits on Efficient Computation in the Physical World
Bridging Space over Time: Global Virtual Team Dynamics and Effectiveness
PathBLAST: a tool for alignment of protein interaction networks.
Conserved patterns of protein interaction in multiple species.
The automatic construction of large-scale corpora for summarization research
The Google File System
Knowledge management in action: integrating knowledge across communities
Understanding availability
Comparison of Database Replication Techniques Based on Total Order Broadcast
Excitatory cortical neurons form fine-scale functional networks.
Different time courses of learning-related activity in the prefrontal cortex and striatum
Functional cartography of complex metabolic networks
A survey of peer-to-peer content distribution technologies
Cooperative inquiry: developing new technologies for children with children
The Impact of Social Structure on Economic Outcomes
Using model checking to find serious file system errors
Lexical Frequency Profiles: A Monte Carlo Analysis
Hop-by-hop congestion control over a wireless multi-hop network
The civic culture : political attitudes and democracy in five nations
The Theory of Planned Behavior
Framing Processes and Social Movements: An Overview and Assessment
Time Is of the Essence: Event History Models in Political Science
Public opinion toward immigration reform: The role of economic motivations
Visualizing data
A Practical Guide to Splines
Analysis of Longitudinal Data
Bayesian Data Analysis
Multilevel Statistical Models
Econometric Analysis
Time Series Analysis
The Elements of Statistical Learning: Data Mining, Inference and Prediction
Exit, voice, and loyalty : responses to decline in firms, organizations, and states
Statistics and Causal Inference
Logistic Regression in Rare Events Data
Designing Social Inquiry: Scientific Inference in Qualitative Research
Generalized Linear Models
The Logic of Collective Action: Public Goods and the Theory of Groups
Qualitative Evaluation and Research Methods
Increasing Returns, Path Dependence, and the Study of Politics
Mixed-Effects Models in S and S-PLUS
The Psychology of Survey Response
Bowling Alone: The collapse and revival of American community
Mathematical Statistics and Data Analysis
R: A language and environment for statistical computing
Observational Studies
Introduction to Probability Models
Time Series Analysis and Its Applications
Democracy in America
Contact order, transition state placement and the refolding rates of single domain proteins.
Bacterial Persistence as a Phenotypic Switch
Human Capital: A Theoretical and Empirical Analysis with Special Reference to Education
Statistical Inference
Practical Nonparametric Statistics
Lectures on Macroeconomics
Analysis of Panel Data
Choices, Values and Frames
The Theory of Incentives: The Principal-agent Model
Microeconomic Theory
Public Choice III
A Course in Game Theory
Nonparametric Econometrics
Information Rules: A Strategic Guide to The Network Economy
The Elements of Style
Integrated transcriptional profiling and linkage analysis for identification of genes underlying disease
Complex trait analysis of gene expression uncovers polygenic and pleiotropic networks that modulate nervous system function
Water conduction through the hydrophobic channel of a carbon nanotube.
Diffusion Kernels on Statistical Manifolds
The Genome of the Basidiomycetous Yeast and Human Pathogen Cryptococcus neoformans
Genome Biology 
Wait-free synchronization
Why cryptosystems fail
Region-based memory management in cyclone
A Gossip-Style Failure Detection Service
Bridging Physical and Virtual Worlds with Electronic Tags
Group communication specifications: a comprehensive study
The Entire Regularization Path for the Support Vector Machine
Criterion functions for document clustering: Experiments and analysis
Deconstructing the relationship between genetics and race
Collaborative Authoring on the Web: A Genre Analysis of Online Encyclopedias
"Conversations in the Blogosphere: An Analysis ""From the Bottom Up"""
Bridging the Gap: A Genre Analysis of Weblogs
The Consequences of Literacy
Information extraction
Using mixture models for collaborative filtering
The Semantics of Predicate Logic as a Programming Language
Call-by-name, call-by-value, and the $\lambda$-calculus
Design Patterns: Elements of Reusable Object-Oriented Software
Smalltalk-80: The Language and Its Implementation
The Art of the Metaobject Protocol
Geographic routing without location information
A cookbook for using the model-view controller user interface paradigm in Smalltalk-80
The use of phrases and structured queries in information retrieval
Combining the language model and inference network approaches to retrieval
Object-oriented application frameworks
Being Digital
Efficient incremental algorithms for dynamic detection of likely invariants
An instructional model for web-based e-learning education with a blended learning process approach
Optimistic Replication
Active learning using pre-clustering
Evaluation of hierarchical clustering algorithms for document datasets
Multiagent Systems: A Survey from a Machine Learning Perspective
A unified framework for model-based clustering
Transductive learning via spectral graph partitioning
The faculty of language: what's special about it?
Stuff I've seen: a system for personal information retrieval and re-use
The relationship between sequence and interaction divergence in proteins.
Recoverable one-dimensional encoding of protein three-dimensional structures.
Splitstream: High-bandwidth multicast in cooperative environments
Tor: The Second-Generation Onion Router
The Symbolic Species: The Co-Evolution of Language and the Brain
Advanced Topics in Types and Programming Languages
Cognitive Psychology: A Student's Handbook
Metaphors We Live By
A guide to LATEX: Document preparation for beginners and advanced users
E-mail writing as a cross-cultural learning experience
Linked: How Everything Is Connected to Everything Else and What It Means
Identity and Search in Social Networks
Automatic Creation of an Autonomous Agent: Genetic Evolution of a Neural-Network Driven Robot
Independent Component Analysis
Foundations of Statistical Natural Language Processing
Bayesian Data Analysis, Second Edition (Chapman & Hall/CRC Texts in Statistical Science)
Learning collaborative information filters
On-line new event detection and tracking
Information literacy: Essential skills for the information age
A New Kind of Science
Improving literature based discovery support by genetic knowledge integration.
Using literature-based discovery to identify disease candidate genes.
Statistical Modeling: The Two Cultures
Combining biological networks to predict genetic interactions.
Modeling Brain Function : The World of Attractor Neural Networks
Electric Fields of the Brain: The Neurophysics of EEG
A simple rule-based part of speech tagger
Learning Bayesian Networks
Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals.
Coase's Penguin, or Linux and the Nature of the Firm
Spiking Neuron Models
The Success of Open Source
The Power of Identity: The Information Age: Economy, Society and Culture, Volume II (The Information Age) 2nd Edition
The Informational City: Information Technology, Economic Restructuring, and the Urban-Regional Process
The Network Society: A Cross-Cultural Perspective
MedKit: a helper toolkit for automatic mining of MEDLINE/PubMed citations
A comprehensive evaluation of multicategory classification methods for microarray gene expression cancer diagnosis.
Statistical Learning Theory
Critical Mass: How One Thing Leads to Another
Media Technology and Society: A History : From the Telegraph to the Internet
On Rereading R. A. Fisher
DakNet: rethinking connectivity in developing nations
Wearable computers as packet transport mechanisms in highly--partitioned ad--hoc networks
Routing in a delay tolerant network
Probabilistic routing in intermittently connected networks
On-demand multipath routing for mobile ad hoc networks
Highly dynamic Destination-Sequenced Distance-Vector routing (DSDV) for mobile computers
Ad-hoc on-demand distance vector routing
Evaluating location predictors with extensive Wi-Fi mobility data
Epidemic Routing for Partially Connected Ad Hoc Networks
The FF planning system: Fast plan generation through heuristic search
Estimation and inference in econometrics
Bayesian Methods: A Social and Behavioral Sciences Approach
This computer responds to user frustration
What's basic about basic emotions?
A model of textual affect sensing using real-world knowledge
The {C}hicago Manual of Style
Towards Semantic Web Mining
Semantic Matching of Web Services Capabilities
{DAML}-{S}: Web Service Description for the Semantic Web
Negotiation and cooperation in multi-agent environments
Enzyme-specific profiles for genome annotation: PRIAM.
A performance comparison of multi-hop wireless ad hoc network routing protocols
A review of current routing protocols for ad hoc mobile wireless networks
A high-throughput path metric for multi-hop wireless routing
Routing in multi-radio, multi-hop wireless mesh networks
Power-aware routing in mobile ad hoc networks
Large-scale copy number polymorphism in the human genome.
Detection of large-scale variation in the human genome
Practical RDF
Nonlinear Dimensionality Reduction by Locally Linear Embedding
Intrinsically unstructured proteins and their functions.
A Taxonomy of Visualization Techniques Using the Data State Reference Model
The Central Role of the Propensity Score in Observational Studies for Causal Effects
Performance of optical flow techniques
Coupled hidden Markov models for complex action recognition
Comparing images using the Hausdorff distance
A Bayesian Approach to Joint Feature Selection and Classifier Design
Simultaneous Feature Selection and Clustering Using Mixture Models
Tutorial on higher-order statistics (spectra) in signal processing and system theory: theoretical results and some applications
Face recognition using eigenfaces
Rapid object detection using a boosted cascade of simple features
Alignment by Maximization of Mutual Information
Tracking Multiple Humans in Complex Situations
On the Surprising Behavior of Distance Metrics in High Dimensional Space
Outlier detection for high dimensional data
Automatic subspace clustering of high dimensional data for data mining applications
Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays
Correlation Clustering
Discovering local structure in gene expression data: the order-preserving submatrix problem
Clustering Gene Expression Patterns
Survey Of Clustering Data Mining Techniques
Random projection in dimensionality reduction: applications to image and text data
Selection of Relevant Features and Examples in Machine Learning
Biclustering of Expression Data
Clustering by compression
Kernel k-means: spectral clustering and normalized cuts
Information-theoretic co-clustering
Cluster analysis and display of genome-wide expression patterns
Database Techniques for the World-Wide Web: {A} Survey
Exploring the conditional coregulation of yeast gene expression through fuzzy k-means clustering
Coupled two-way clustering analysis of gene microarray data
The Elements of Statistical Learning
Defining transcription modules using large-scale gene expression data
Cluster Analysis for Gene Expression Data: {A} Survey
Wrappers for Feature Subset Selection
Efficient clustering of high-dimensional data sets with application to reference matching
Unsupervised Feature Selection using Feature Similarity
Subspace Clustering for High Dimensional Data: {A} Review
{X}-means: Extending {K}-means with Efficient Estimation of the Number of Clusters
Genome-wide analysis of {DNA} copy-number changes using c{DNA} microarrays
Rich Probabilistic Models for Gene Expression
Discovering molecular pathways from protein interaction and gene expression data
Social information filtering: algorithms for automating Â“word of mouthÂ”
Comprehensive Identification of Cell Cycle-regulated Genes of the Yeast Saccharomyces cerevisiae by Microarray Hybridization
Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation
Systematic determination of genetic network architecture
Ontology-based integration of information - a survey of existing approaches
Feature selection for high-dimensional data: a fast correlation-based filter solution
The information bottleneck method
Probabilistic latent semantic indexing
Facts from Textâ€”Is Text Mining Ready to Deliver?
Artificial Intelligence
Annual Report 2000-2001
A Ligand-centric Analysis of the Diversity and Evolution of Proteinâ€“Ligand Relationships in E.coli
Inference by Eye: Confidence Intervals and How to Read Pictures of Data
Real life information retrieval: a study of user queries on the Web
KEA: Practical Automatic Keyphrase Extraction
Mining the Web: Discovering Knowledge from Hypertext Data
Automatic generation of overview timelines
Identifying communities of practice through ontology network analysis
RADAR: An In-Building RF-Based User Location and Tracking System
Weaving the Web: The Original Design and Ultimate Destiny of the World Wide Web by its Inventor
Visualizing {K}nowledge {D}omains
No {S}ilver {B}ullet: {E}ssence and {A}ccidents of {S}oftware {E}ngineering
Named Graphs, Provenance and Trust
What are ontologies, and why do we need them?
Experiences of Developing and Deploying a Context-Aware Tourist Guide: The GUIDE Project
What is a knowledge representation?
The {O}ntolingua {S}erver: a {T}ool for {C}ollaborative {O}ntology {C}onstruction
Using {O}ntologies for {I}ntegrated {G}eographic {I}nformation {S}ystems
Graph {D}rawing by {F}orce-directed {P}lacement
Generalized fisheye views
Content-rich biological network constructed by mining PubMed abstracts.
Stability and generalization
Nutrient control of glucose homeostasis through a complex of PGC-1alpha and SIRT1.
Reinforcement Learning: An Introduction (Adaptive Computation and Machine Learning)
Stimulating knowledge discovery and sharing
Hypertext and knowledge management
Relevance: a review of and a framework for the thinking on the notion in information science
Spatiotemporal firing patterns in the frontal cortex of behaving monkeys
Theta Oscillations in the Hippocampus
Attractor dynamics of network {UP} states in the neocortex
Stable propagation of synchronous spiking in cortical neural networks
Pattern recognition computation using action potential timing for stimulus representation
Neural Networks and physical systems with emergent collective computational abilities
Synfire Chains and Cortical Songs: {T}emporal Modules of Cortical Activity
Hebbian learning and spiking neurons
Integrator or coincidence detector? {T}he role of the cortical neuron revisited.
Networks of spiking neurons: The third generation of neural network models
Synchronization of Pulse-Coupled Biological Oscillators
Structure and Function of Dendritic Spines
Phase relationship between hippocampal place units and the {EEG} theta rhythm
Computational subunits in thin dendrites of pyramidal cells
Theta phase precession in hippocampal neuronal populations and the compression of temporal sequences
ClearBoard: a seamless medium for shared drawing and conversation with eye contact
Mapping the Protein Universe
Dynamics and mechanics of the microtubule plus end
The molecular motor toolbox for intracellular transport.
The rise and fall of a networked society: A formal model
Efficient implementation of the smalltalk-80 system
Into the heart of darkness: large-scale clustering of human non-coding DNA
Aligning Multiple Genomic Sequences With the Threaded Blockset Aligner
Identification and Characterization of Multi-Species Conserved Sequences
Ultraconserved elements in the human genome.
A Sentimental Education: Sentiment Analysis Using Subjectivity Summarization Based on Minimum Cuts
The Definition of Standard ML - Revised
Information, Trade, and Common Knowledge
Agile Software Development
Introduction to Bioinformatics
From paragraph to graph: Latent semantic analysis for information visualization
The UCSC Genome Browser Database.
From SHIQ and RDF to OWL: The Making of a Web Ontology Language
Artificial intelligence : a modern approach
Information Visualization
Machines and Mindlessness: Social Responses to Computers
Persuasive technology: using computers to change what we think and do
Convolution {K}ernels on {D}iscrete {S}tructures
Finding Groups in Data. An Introduction to Cluster Analysis
A survey of kernels for structured data.
Convolution Kernels for Natural Language.
{BIRCH}: An Efficient Data Clustering Method For Very Large Databases
Exploiting virtual synchrony in distributed systems
WordNet: An Electronic Lexical Database (Language, Speech, and Communication)
Artificial evolution for computer graphics
How Visual Stimuli Activate Dopaminergic Neurons at Short Latency
Independent component analysis - a new concept?
Elements of Information Theory
Entropy and Information Theory
Independent Component Analysis: Algorithms and Applications
Survey on Independent Component Analysis
Preattentive texture discrimination with early vision mechanisms
Learning to detect natural image boundaries using local brightness, color and texture cues
Emergence of simple-cell receptive field properties by learning a sparse code for natural images
Shiftable Multi-scale Transforms
Mindstorms: Children, Computers and Powerful Ideas
Genetic Algorithms in Search, Optimization, and Machine Learning
Adaptation in Natural and Artificial Systems
The Tragedy of the Commons
Why interaction is more powerful than algorithms
The Wiki Way: Collaboration and Sharing on the Internet
Blog : Understanding the Information Reformation That's Changing Your World
Chemogenomic profiling on a genome-wide scale using reverse-engineered gene networks
A small moleculeâ€“kinase interaction map for clinical kinase inhibitors
Quantum Dots for Live Cells, in Vivo Imaging, and Diagnostics
An introduction to support vector machines : and other kernel-based learning methods
Molecular motors
Fast Planning Through Planning Graph Analysis
Process Modeling
STRIPS: A new approach to the application of theorem proving to problem solving
Inversion of Control Containers and the Dependency Injection pattern
Semi-automatic Composition of Web Services using Semantic Descriptions
HTN Planning for Web Service Composition Using SHOP2
Workflow Patterns
Recent advances in AI planning
Reasoning about Uncertainty
The Nature of Statistical Learning Theory (Information Science and Statistics)
Pattern-Oriented Software Architecture Volume 1: A System of Patterns
Web Services
Software Architecture: Perspectives on an Emerging Discipline
Model Checking
Workflow Management: Models, Methods, and Systems (Cooperative Information Systems)
Empirical Analysis of Transcriptional Activity in the Arabidopsis Genome
Structural mechanisms for domain movements in proteins
Automatic verification of finite-state concurrent systems using temporal logic specifications
Maximizing the spread of influence through a social network
{PROLOG} Programming for Artificial Intelligence
Rete: A Fast Algorithm for the Many Pattern/Many Object Pattern Match Problem
Tcl and the Tk Toolkit
Freedom Evolves
Consciousness Explained
Real Patterns
The Society of Mind
Planning for Conjunctive Goals
{Agent Theories, Architectures, and Languages: A Survey}
The selfish gene
The Road to Reality: a complete guide to the laws of the universe
An Economic Model of Representative Democracy
Localization From Mere Connectivity
Robust Incentive Techniques for Peer-to-Peer Networks
Model Selection and Multimodel Inference
Information Distance
An Introduction to Kolmogorov Complexity and its Applications
A Theory of the Learnable
Categorical data analysis
Learning in the Presence of Concept Drift and Hidden Contexts
{NIST/SEMATECH e-Handbook of Statistical Methods}
Approximate Statistical Tests for Comparing Supervised Classification Learning Algorithms
Ensemble Methods in Machine Learning
On the Optimality of the Simple {B}ayesian Classifier under Zero-One Loss
Multi-interval discretization of continuous-valued attributes for classification learning
Building classifiers using {B}ayesian networks
Knowledge Acquisition via Incremental Conceptual Clustering
Discriminative vs informative learning
Learning with Kernels
Improvements on Cross-Validation: The .632+ Bootstrap Method
Estimation of Entropy and Mutual Information
Information Theory and Statistical Mechanics
Reinforcement Learning: An Introduction
Learning the Kernel Matrix with Semi-Definite Programming
Information Theory, Inference, and Learning Algorithms
A theory for multiresolution signal decomposition: the wavelet representation
A New Approach to Linear Filtering and Prediction Problems
Induction of Decision Trees
Machine Learning
On Discriminative vs. Generative Classifiers: A comparison of logistic regression and naive {B}ayes
Approximating Discrete Probability Distributions with Dependence Trees
Causality: Models, Reasoning, and Inference
Probabilistic Reasoning in Intelligent Systems
Graphical models, exponential families, and variational inference
Probabilistic Outputs for Support Vector Machines and Comparisons to Regularized Likelihood Methods
Pattern Recognition and Neural Networks
Bayesian Theory
Inference of population structure using multilocus genotype data
Regression shrinkage and selection via the lasso
A Mathematical Theory of Communication
A view of the {EM} algorithm that justifies incremental, sparse, and other variants
The Nature of Statistical Learning Theory
No free lunch theorems for search
Classification and Regression Trees
Fuzzy sets
Inducing features of random fields
Controlling the false discovery rate: a practical and powerful approach to multiple testing
Statistical mechanics of complex networks
Max-Margin {M}arkov Networks
A comparison of algorithms for maximum entropy parameter estimation
{Maximum likelihood from incomplete data via the EM algorithm}
The {EM} Algorithm and Extensions
Game theory, maximum entropy, minimum discrepancy, and robust {B}ayesian decision theory
Understanding Belief Propagation and Its Generalizations
The moderator-mediator variable distinction in social psychological research: Conceptual, strategic and statistical considerations
A decision-theoretic generalization of on-line learning and an application to boosting
Bagging Predictors
Bayesian network classifiers
A Comparison of Event Models for Naive {B}ayes Text Classification
Markov chain sampling methods for {D}irichlet process mixture models
Conditional random fields: Probabilistic models for segmenting and labeling sequence data
Ensemble Selection from Libraries of Models
Toward optimal feature selection
Stochastic complexity and modeling
Theoretical Neuroanatomy: Relating Anatomical and Functional Connectivity in Graphs and Cortical Connection Matrices
Variational extensions to {EM} and multinomial {PCA}
Factor graphs and the sum-product algorithm
Generalized belief propagation
Probabilistic principal component analysis
Applying Discrete {PCA} in Data Analysis
Bayesian Model Averaging: A Tutorial
A Social Network for Societal-Scale Decision-Making Systems
Toward alternative metrics of journal impact: A comparison of download and citation data
Information retrieval on the web
Web Service Composition: Current Solutions and Open Problems
Computational approaches to cellular rhythms
A twelve-step program for evolving multicellularity and a division of labor.
Handbook on Ontologies (International Handbooks on Information Systems)
Designing Calm Technology
Security Engineering: A Guide to Building Dependable Distributed Systems
Learning to match ontologies on the Semantic Web
What Would It Mean to Blog on the Semantic Web?
Between aesthetics and utility: designing ambient information visualizations
Gorillas in our midst: sustained inattentional blindness for dynamic events.
Estimation and Inference via Bayesian Simulation: An Introduction to Markov Chain Monte Carlo
OWL-S: Semantic Markup for Web Services
The NCEP&#47;NCAR 40-Year Reanalysis Project
The relation between the divergence of sequence and structure in proteins.
A Universal Image Quality Index
A Statistical Model for Indoor Multipath Propagation
Definitional interpreters for higher-order programming languages
Temporal Sequence Learning, Prediction, and Control: A Review of Different Models and Their Relation to Biological Mechanisms
Algorithms for Drawing Graphs: An Annotated Bibliography
A Model of Saliency-Based Visual Attention for Rapid Scene Analysis
Socially translucent systems: social proxies, persistent conversation, and the design of &ldquo;babble&rdquo;
Positive attitudes and failed queries: an exploration of the conundrums of consumer health information retrieval
Characteristics of consumer terminology for health information retrieval.
On the Convergence Properties of the EM Algorithm
Natural Language Processing
{TnT -- a statistical part-of-speech tagger}
{Text Chunking using Transformation-Based Learning}
Chunking with Support Vector Machines
{Boosting the margin: A New Explanation for the Effectiveness of Voting Methods}
Shallow Parsing with Conditional Random Fields
The impact of digital information resources on the roles of collection managers in research libraries
Logic in Computer Science: Modelling and Reasoning about Systems
Emergence: The Connected Lives of Ants, Brains, Cities, and Software
Links and power: the political economy of linking on the Web
Cultivating Communities of Practice
The Hierarchical Hidden Markov Model: Analysis and Applications
The nonsense of 'knowledge management'
The vocabulary problem in human-system communication
Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22.
Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs.
A computational substrate for incentive salience.
The virtual visit: using telecommunications technology to take care of patients.
Reâ€“approaching nearness: online communication and its place in Praxis
Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information.
Phantom authority, selfâ€“selective recruitment and retention of members in virtual communities: The case of Wikipedia
gIBIS: a hypertext tool for exploratory policy discussion
Selection bias in gene extraction on the basis of microarray gene-expression data
Scholarly publishing and argument in hyperspace
Hierarchical faceted metadata in site search interfaces
ClaimSpotter: an environment to support sensemaking with knowledge triples
Faceted metadata for image search and browsing
Which semantic web?
Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences
Why CSCW applications fail: problems in the design and evaluationof organizational interfaces
Surveying Saccharomyces genomes to identify functional elements by comparative DNA sequence analysis.
Finding Functional Features in Saccharomyces Genomes by Phylogenetic Footprinting
The perfect search engine is not enough: a study of orienteering behavior in directed search
Lessons from the reMail prototypes
ContactMap: Organizing communication in a social desktop
In pursuit of desktop evolution: User problems and practices with modern desktop systems
A partition function algorithm for nucleic acid secondary structure including pseudoknots
siRNAs can function as miRNAs
Genome evolution in yeasts.
A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure.
Noncoding RNA genes.
RNA sequence analysis using covariance models.
Nonâ€“coding RNA genes and the modern RNA world 
RNA folding at elementary step resolution.
Design of multistable RNA molecules.
A comprehensive comparison of comparative RNA structure prediction approaches
HyPaLib: a database of RNAs and RNA structural elements defined by hybrid patterns.
Rfam: an RNA family database.
Prediction of locally stable RNA secondary structures for genome-wide surveys.
Secondary Structure Prediction for Aligned RNA Sequences
Vienna RNA secondary structure server
Large-Scale Transcriptional Activity in Chromosomes 21 and 22
Sequencing and comparison of yeast species to identify genes and regulatory elements.
Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae
Pfold: RNA secondary structure prediction using stochastic context-free grammars
A computational screen for methylation guide snoRNAs in yeast.
RNA Pseudoknot Prediction in Energy-Based Models
Using an {RNA} secondary structure partition function to determine confidence in base pairs predicted by free energy minimization
Fast algorithm for predicting the secondary structure of single-stranded RNA.
Secondary structure alone is generally not statistically significant for the detection of noncoding RNAs.
Noncoding RNA gene detection using comparative sequence analysis.
Computational identification of noncoding RNAs in E. coli by comparative genomics.
A dynamic programming algorithm for RNA structure prediction including pseudoknots.
An Iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots
How does a protein fold?
From sequences to shapes and back: a case study in RNA secondary structures.
Compilation of tRNA sequences and sequences of tRNA genes.
Fast and reliable prediction of noncoding RNAs.
The genome sequence of Schizosaccharomyces pombe.
No evidence that mRNAs have lower folding free energies than random sequences with the same dinucleotide distribution.
Complete suboptimal folding of RNA and the stability of secondary structures.
What the Best College Teachers Do
Beyond Bandwidth: Dimensions of Connection in Interpersonal Communication
Spike-timing-dependent synaptic plasticity depends on dendritic location.
The global distribution of clinical episodes of Plasmodium falciparum malaria
Reflections on Gender and Technology Studies: In What State is the Art?
Feminism and Constructivism: Do Artifacts Have Gender?
Distributed rational decision making
Long-lasting potentiation of synaptic transmission in the dentate area of the anaesthetized rabbit following stimulation of the perforant path
Mechanism design for automated negotiation, and its application to task oriented domains
Prefrontal cortex and decision making in a mixed-strategy game.
Four Dark Corners of Requirements Engineering
Technology and Social Inclusion: Rethinking the Digital Divide
A {F}ramework for {U}nderstanding and {C}lassifying {O}ntology {A}pplications
The equilibrium partition function and base pair binding probabilities for RNA secondary structure
The language of RNA: a formal grammar that includes pseudoknots
Getting to the (c)ore of knowledge: mining biomedical literature
Abstract interpretation: a unified lattice model for static analysis of programs by construction or approximation of fixpoints
Regularization and variable selection via the elastic net
Multiple flexible structure alignment using partial order graphs.
Colorization Using Optimization
Measuring Similarity between Ontologies
Similarity for Ontologies - a Comprehensive Framework
Features of Similarity
Using Information Content to Evaluate Semantic Similarity in a Taxonomy
Focused crawling: a new approach to topic-specific Web resource discovery
Towards the Self-Annotating Web
REMINDIN': Semantic Query Routing in Peer-to-Peer Networks Based on Social Metaphors
{RDFPeers}: A Scalable Distributed {RDF} Repository based on A Structured Peer-to-Peer Network
Toward Principles for the Design of Ontologies Used for Knowledge Sharing
Search in power-law networks
A Random Graph Model for Massive Graphs
Evolution of the social network of scientific collaborations
Design and evaluation of a wide-area event notification service
Protecting Free Expression Online with Freenet
Routing Indices For Peer-to-Peer Systems
On Power-Law Relationships of the Internet Topology
Tarzan: A Peer-to-Peer Anonymizing Network Layer
Semantic Search
Gossip-based Ad Hoc Routing
A Software Framework For Matchmaking Based on Semantic Web Technology
Approximate Frequency Counts over Data Streams
Peer-to-Peer Computing
Enforcing Fair Sharing of Peer-to-Peer Resources
Ontology Development 101: A Guide to Creating Your First Ontology
Winners don't take all: Characterizing the competition for links on the web
Development and application of a metric on semantic nets
A Scalable Content Addressable Network
Routing Algorithms for {DHT}s: Some Open Questions
Flocks, Herds, and Schools: A Distributed Behavioral Model
An Analysis of Internet Content Delivery Systems
A Measurement Study of Peer-to-Peer File Sharing Systems
E-books in academic libraries
Visualization of {S}earch {R}esults: {A} {C}omparative {E}valuation of {T}ext, 2{D}, and 3{D} {I}nterfaces
Writing {G}ood {S}oftware {E}ngineering {R}esearch {P}apers
Designing the {U}ser {I}nterface: {S}trategies for {E}ffective {H}uman-{C}omputer {I}nteraction
Dynamic {Q}ueries for {V}isual {I}nformation {S}eeking
A rational design process: how and why to fake it
How the mind works
Diffusion of innovations
Principles of {C}ategorization
The problems of philosophy
Graphical {F}isheye {V}iews
Adaptive Coding of Reward Value by Dopamine Neurons
Artificial {L}ife
Triggers and {B}arriers to {C}ustomizing {S}oftware
Automating the design of graphical presentations of relational information
Ontologies for {E}nterprise {K}nowledge {M}anagement
R{DF} {P}rimer
Program comprehension during software maintenance and evolution
Visualization of {S}emantic {M}etadata and {O}ntologies
Representing and Using Non-Functional Requirements: A Process-Oriented Approach
An {I}ntroduction to {D}escription {L}ogics
The {K}nowledge {L}evel
The {D}esign of {E}veryday {T}hings
Ontology {L}anguages for the {S}emantic {W}eb
Usability analysis of visual programming environments: a `cognitive dimensions' framework
Towards principles for the design of ontologies used for knowledge sharing
Statecharts: A Visual Formalism for Complex Systems
Graph {V}isualization and {N}avigation in {I}nformation {V}isualization: {A} {S}urvey
Distributed cognition: Toward a new foundation for human-computer interaction research
Probability Theory: The Logic of Science
The vision of autonomic computing
Logical {F}oundations of {O}bject-{O}riented and {F}rame-based {L}anguages
An open graph visualization system and its applications to software engineering
Logical foundations of artificial intelligence
Predictive reward signal of dopamine neurons.
A neural substrate of prediction and reward.
Discrete coding of reward probability and uncertainty by dopamine neurons.
The Development of Embodied Cognition: Six Lessons from Babies
A domain-independent framework for modeling emotion
How to make a semantic web browser.
Semantic Email
Reflections on NoteCards: Seven issues for the next generation of hypermedia systems
Digital library resources as a basis for collaborative work
The {Dexter} hypertext reference model
Knowledge modeling for open adaptive hypermedia
Using Web annotations for asynchronous collaboration around documents
The Intellectual Challenge of CSCW: The gap between social requirements and technical feasibility
Supporting email workflow
Coda: A Highly Available File System for a Distributed Workstation Environment
{CVS} {II}: Parallelizing Software Development
{KQML as an Agent Communication Language}
Learning to map between ontologies on the semantic web
Presto: An Experimental Architecture for Fluid Interactive Document Spaces
GroupKit: {A} groupware toolkit for building real-time conferencing applications
OIL: An ontology infrastructure for the semantic web
Supporting Trust in Virtual Communities
{FOHM}: a fundamental open hypertext model for investigating interoperability between hypertext domains
The mutual knowledge problem and its consequences for dispersed collaboration
The Case for Institutional Repositories: A {SPARC} Position Paper
{Anchored Conversations}: chatting in the context of a document
Augmenting Organizational Memory: {A} Field Study of {Answer Garden}
{MyLifeBits}: Fulfilling the Memex Vision
Xanalogical Structure: Needed Now More than Ever: Parallel Documents, Deep Links to Content, Deep Versioning, and Deep Re-Use
XML Path Language (XPath)
Database Management Systems
Change Detection in Hierarchically Structured Information
A Computational Approach to Edge Detection
Face recognition: A literature survey
Computability and Logic
Aspects of the Theory of Syntax
Introduction to Lattices and Order
Proofs and Types
Dynamic Logic
Critique of Pure Reason
Introduction to Metamathematics
Naming and Necessity
On the Plurality of Worlds
Categories for the Working Mathematician
Thought and Language
How To Solve It
Contingency, Irony, and Solidarity
Aspect-Oriented Programming
Life at low Reynolds number
Architectural Styles and the Design of Network-based Software Architectures
metaSHARK: software for automated metabolic network prediction from DNA sequence and its application to the genomes of Plasmodium falciparum and Eimeria tenella
Modular Interdependency in Complex Dynamical Systems
Adaptation in Natural and Artificial Systems: An Introductory Analysis with Applications to Biology, Control, and Artificial Intelligence
Software Engineering Economics
Two case studies of open source software development: Apache and Mozilla
The Role of RSS in Science Publishing: Syndication and Annotation on the Web
Resource Harvesting within the OAI-PMH Framework
Through the Interface: A Human Activity Approach to User Interface Design
Cognition and Communication at Work
Case study: extreme programming in a university environment
HCI Models, Theories, and Frameworks: Toward a Multidisciplinary Science (Interactive Technologies)
Design at Work: Cooperative Design of Computer Systems
Context and Consciousness: Activity Theory and Human-Computer Interaction
askMEDLINE: a free-text, natural language query tool for MEDLINE/PubMed
First Person: New Media as Story, Performance, and Game
Comic Chat
Understanding Comics: The Invisible Art
Plasticity, evolvability, and modularity in RNA.
Jena: implementing the semantic web recommendations
The Tipping Point: How Little Things Can Make a Big Difference
The Mythical Man-Month: Essays on Software Engineering
Diffusion of Innovations, 5th Edition
Visual Explanations: Images and Quantities, Evidence and Narrative
Balanced inhibition underlies tuning and sharpens spike timing in auditory cortex
The Anatomy of a Search Engine
Mining the peanut gallery: opinion extraction and semantic classification of product reviews
A taxonomy and evaluation of dense two-frame stereo correspondence algorithms
"""GrabCut"": interactive foreground extraction using iterated graph cuts"
Cybertext: perspectives on ergodic literature
Hamlet on the Holodeck: The Future of Narrative in Cyberspace
Dopamine: the salient issue.
An empirical Bayes approach to inferring large-scale gene association networks
Complex Adaptations and the Evolution of Evolvability
GPU Gems 2: Programming Techniques for High-Performance Graphics and General-Purpose Computation
The New Media Reader
Web Services Orchestration and Choreography
A general mechanism for perceptual decision-making in the human brain.
Empirical limits for template-based protein structure prediction: the CASP5 example.
The protein structure prediction problem could be solved using the current PDB library
Scoring function for automated assessment of protein structure template quality
Stable fluids
Ant Algorithms for Discrete Optimization
Ultrasensitivity and noise propagation in a synthetic transcriptional cascade
Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell.
3D-Jury: a simple approach to improve protein structure predictions.
Control of stochasticity in eukaryotic gene expression.
Modeling the hemodynamic response to brain activation.
Calibrated functional {MRI}: mapping the dynamics of oxidative metabolism.
Mathematical {P}hysiology
Advanced {E}ngineering {M}athematics
Brain magnetic resonance imaging with contrast dependent on blood oxygenation.
Advances in functional and structural {MR} image analysis and implementation as {FSL}
Numerical {L}inear {A}lgebra
A model for the coupling between cerebral blood flow and oxygen metabolism during neural stimulation.
Resting fluctuations in arterial carbon dioxide induce significant low frequency variations in BOLD signal.
Queueing Networks and Markov Chains : Modeling and Performance Evaluation With Computer Science Applications
Automobile Prices in Market Equilibrium
Estimating Discrete-Choice Models of Product Differentiation
Sample Selection Bias as a Specification Error
Analyzing neural responses to natural signals: maximally informative dimensions.
Dynamics of blood flow and oxygenation changes during brain activation: the balloon model.
Nonlinear responses in fMRI: the Balloon model, Volterra kernels, and other hemodynamics.
A guided tour to approximate string matching
Topology of evolving networks: Local events and universality
Molecular Biology of the Cell
{A natural class of robust networks}
Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells.
{Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in Escherichia coli}
{Analyzing yeast protein-protein interaction data obtained from different sources}
{Computational discovery of gene modules and regulatory networks}
{Scale-free networks}
{Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion}
Predicting gene expression from sequence.
{Characterizing gene sets with FuncAssociate}
Emergent properties of networks of biological signaling pathways.
{Noise in eukaryotic gene expression}
Gene networks: how to put the function in genomics.
Gene expression data analysis.
Regulatory element detection using correlation with expression.
The transcriptional program of sporulation in budding yeast.
{Creating the gene ontology resource: design and implementation}
Gene ontology: Tool for the unification of biology
Integrating high-throughput and computational data elucidates bacterial networks.
Constraints-based models: regulation of gene expression reduces the steady-state solution space.
Metabolic modeling of microbial strains in silico.
Genetic network inference: from co-expression clustering to reverse engineering.
A genomic regulatory network for development.
{Exploring the metabolic and genetic control of gene expression on a genomic scale}
{Protein interactions: two methods for assessment of the reliability of high throughput observations}
{Structure of growing networks with preferential linking}
{MolMovDB: analysis and visualization of conformational change and structural flexibility}
{Bridging structural biology and genomics: assessing protein interaction data with known complexes}
{Protein function in the post-genomic era}
{Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network}
{Evolutionary rate in the protein interaction network}
{A simple dependence between protein evolution rate and the number of protein-protein interactions}
Linking the genes: inferring quantitative gene networks from microarray data.
Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data.
{Inferring genetic networks and identifying compound mode of action via expression profiling}
{Genomic expression programs in the response of yeast cells to environmental changes}
Functional organization of the yeast proteome by systematic analysis of protein complexes.
Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae.
{Integrating 'omic' information: a bridge between genomics and systems biology}
{A database of macromolecular motions}
Global analysis of protein expression in yeast.
{Functional profiling of the Saccharomyces cerevisiae genome}
A protein interaction map of Drosophila melanogaster.
{Life with 6000 genes}
Molecular classification of cancer: class discovery and class prediction by gene expression monitoring.
{Comparing protein abundance and mRNA expression levels on a genomic scale}
{Combinatorial synthesis of genetic networks}
{From molecular to modular cell biology}
{Computational studies of gene regulatory networks: in numero molecular biology}
{Engineered gene circuits}
{The relationship between protein structure and function: a comprehensive survey with application to the yeast genome}
The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data.
Reconciling gene expression data with known genome-scale regulatory network structures.
{Protein dispensability and rate of evolution}
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry.
{Dissecting the regulatory circuitry of a eukaryotic genome}
Global analysis of protein localization in budding yeast.
Sensitivity and specificity of inferring genetic regulatory interactions from microarray experiments with dynamic Bayesian networks.
{A new approach to decoding life: systems biology}
{Discovering regulatory and signalling circuits in molecular interaction networks}
{Building with a scaffold: emerging strategies for high- to low-level cellular modeling}
Revealing modular organization in the yeast transcriptional network.
{Prediction and measurement of an autoregulatory genetic module}
A comprehensive two-hybrid analysis to explore the yeast protein interactome.
{Relating whole-genome expression data with protein-protein interactions}
{A Bayesian networks approach for predicting protein-protein interactions from genomic data}
{Translating the histone code}
{Lethality and centrality in protein networks}
Genetic Network Analyzer: qualitative simulation of genetic regulatory networks.
Modeling and simulation of genetic regulatory systems: a literature review.
{Ordering genes in a flagella pathway by analysis of expression kinetics from living bacteria}
{Conserved pathways within bacteria and yeast as revealed by global protein network alignment}
Untangling the wires: a strategy to trace functional interactions in signaling and gene networks.
{Organization of growing random networks}
{Connectivity of growing random networks}
{Normal mode analysis of macromolecular motions in a database framework: developing mode concentration as a useful classifying statistic}
Subcellular localization of the yeast proteome.
{Three-dimensional cluster analysis identifies interfaces and functional residue clusters in proteins}
Yeast genome duplication was followed by asynchronous differentiation of duplicated genes.
A map of the interactome network of the metazoan C. elegans.
Network component analysis: reconstruction of regulatory signals in biological systems.
Expression monitoring by hybridization to high-density oligonucleotide arrays.
{What is bioinformatics? A proposed definition and overview of the field}
{Structure and function of the feed-forward loop network motif}
{The Coherent Feedforward Loop Serves as a Sign-sensitive Delay Element in Transcription Networks}
{Mining literature for protein-protein interactions}
{Localizing proteins in the cell from their phylogenetic profiles}
Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or interologs.
{Synchronizing genetic relaxation oscillators by intercell signaling}
{Evolving protein interaction networks through gene duplication}
Inferring subnetworks from perturbed expression profiles.
Gene networks inference using dynamic Bayesian networks.
Identifying regulatory networks by combinatorial analysis of promoter elements.
Whole-genome discovery of transcription factor binding sites by network-level conservation.
Computational analysis of microarray data.
{Hierarchical organization of modularity in metabolic networks}
{Hierarchical organization in complex networks}
C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression.
{Genome-wide location and function of DNA binding proteins}
{Modular organization of cellular networks}
{Signaling and circuitry of multiple MAPK pathways revealed by a matrix of global gene expression profiles}
{Assigning numbers to the arrows: parameterizing a gene regulation network by using accurate expression kinetics}
{Negative autoregulation speeds the response times of transcription networks}
RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12.
Parallel human genome analysis: microarray-based expression monitoring of 1000 genes.
Quantitative monitoring of gene expression patterns with a complementary DNA microarray.
A network of protein-protein interactions in yeast.
{Genome-wide discovery of transcriptional modules from DNA sequence and gene expression}
{Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data}
{Detailed map of a cis-regulatory input function}
Cytoscape: a software environment for integrated models of biomolecular interaction networks.
{Network motifs in the transcriptional regulation network of Escherichia coli}
Genetic network modeling.
{A gene-coexpression network for global discovery of conserved genetic modules}
Reverse engineering gene networks: integrating genetic perturbations with dynamical modeling.
Systematic genetic analysis with ordered arrays of yeast deletion mutants.
A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules.
{Functional modules by relating protein interaction networks and gene expression}
{The packing density in proteins: standard radii and volumes}
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae.
{Global protein function prediction from protein-protein interaction networks}
{Large-scale topological and dynamical properties of the Internet}
{Mechanisms of noise-resistance in genetic oscillators}
{The yeast protein interaction network evolves rapidly and contains few redundant duplicate genes}
{The small world inside large metabolic networks}
{How the global structure of protein interaction networks evolves}
{Detecting putative orthologs}
Applied bioinformatics for the identification of regulatory elements.
{Evolutionary conservation of motif constituents in the yeast protein interaction network}
{DIP: the database of interacting proteins}
{DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions}
{Reverse engineering gene networks using singular value decomposition and robust regression}
{Modeling the Internet's large-scale topology}
Genomic analysis of gene expression relationships in transcriptional regulatory networks.
Just-in-time transcription program in metabolic pathways.
{Global analysis of protein activities using proteome chips}
Evidence for dynamically organized modularity in the yeast protein-protein interaction network.
Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs.
Role of duplicate genes in genetic robustness against null mutations.
Using a quantitative blueprint to reprogram the dynamics of the flagella gene network.
Information geometry on hierarchy of probability distributions
Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles
Natural Gradient Works Efficiently in Learning
Improving support vector machine classifiers by modifying kernel functions
A Tutorial on Support Vector Machines for Pattern Recognition
A combined algorithm for genome-wide prediction of protein function
Detecting Protein Function and Protein-Protein Interactions from Genome Sequences
Graphical Models
Evolutionary trees from DNA sequences: a maximum likelihood approach
The spectrum kernel: a string kernel for SVM protein classification
Knowledge-based analysis of microarray gene expression data by using support vector machines
Support Vector Machine Classification and Validation of Cancer Tissue Samples Using Microarray Expression Data
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
Kernel principal component analysis
Support Vector Clustering
Text Classification using String Kernels
A training algorithm for optimal margin classifiers
Multi-class protein fold recognition using support vector machines and neural networks
A critical point for random graphs with a given degree sequence
Predicting protein-protein interactions from primary structure
Gene Selection for Cancer Classification using Support Vector Machines
Modeling of protein interaction networks
Random graphs as models of networks
Deterministic scale-free networks
Hidden Markov Models for Detecting Remote Protein Homologies
Exploiting the past and the future in protein secondary structure prediction
Proteomics to study genes and genomes
Spline Models for Observational Data
Theory of reproducing kernels
Principal component analysis
The Stanford Microarray Database
{LIGAND}: database of chemical compounds and reactions in biological pathways
The {KEGG} databases at {G}enome{N}et
Exploring the new world of the genome with DNA microarrays
Co-clustering of biological networks and gene expression data
Topological and causal structure of the yeast transcriptional regulatory network
Linear Algebra and Its Applications
Modeling Regulatory Networks with Weight Matrices
Molecular Cloning: A Laboratory Manual
Numerical Recipes in {C}: The Art of Scientific Computing
Simulation of prokaryotic genetic circuits
Genomic Cis-Regulatory Logic: Experimental and Computational Analysis of a Sea Urchin Gene
Exploration of essential gene functions via titratable promoter alleles
{KEGG: Kyoto Encyclopedia of Genes and Genomes}
Complex Acts of Knowing: Paradox and Descriptive Self-awareness
Managing Gigabytes: Compressing and Indexing Documents and Images
Tapestry: An Infrastructure for Fault-tolerant Wide-area Location and Routing
Conduction of Heat in Solids
Density Estimation for Statistics and Data Analysis
Convergence of Probability Measures
The random walk's guide to anomalous diffusion: a fractional dynamics approach
Computer Simulation of Liquids
Real Analysis
Mersenne Twister: a 623-dimensionally equidistributed uniform pseudorandom number generator
Ergodic theory of chaos and strange attractors
Foundational Calculi for Programming Languages
Basic Concepts and Taxonomy of Dependable and Secure Computing
Computers as Theatre
On the detection of semantic concepts at TRECVID
Graph-Based Algorithms for Boolean Function Manipulation
Symbolic Model Checking: $10^20$ States and Beyond
The role of emotion in believable agents
Optimal eye movement strategies in visual search
The DNA sequence of the human X chromosome.
Designing culturally situated technologies for the home
Engineered riboregulators enable post-transcriptional control of gene expression.
The many faces of sequence alignment
Hypertext Theory and Criticism: An Annotated Bibliography
Complex information processing: a file structure for the complex, the changing and the indeterminate
The Electronic Word: Democracy, Technology, and the Arts
``Put-that-there'': Voice and gesture at the graphics interface
Likelihood Ratio Tests for Model Selection and Non-Nested Hypotheses
Open Source software in medical informatics--why, how and what
The cathedral and the bazaar: musings on Linux and Open Source by an accidental revolutionary
Design in the absence of practice: breaching experiments
Understanding fault-tolerant distributed systems
Environmental genome shotgun sequencing of the Sargasso Sea.
Taking technomethodology seriously: hybrid change in the ethnomethodology-design relationship
Experience prototyping
Patterns of interaction between plants and pollinators along an environmental gradient
BioMed Central 
The plasticity of aging: insights from long-lived mutants.
Okapi at TREC
Mathematical Models in Biology
Ambiguity as a resource for design
Intelligibility and accountability: Human considerations in context-aware systems
Institutional Ecology, 'Translations' and Boundary Objects: Amateurs and Professionals in Berkeley's Museum of Vertebrate Zoology, 1907-39
Co-transcriptional folding is encoded within {RNA} genes.
A Faceted Approach to Building Ontologies
Haystack: A Platform for Creating, Organizing, and Visualizing Information Using RDF
Haystack: A Platform for Authoring End User Semantic Web Applications
Classification and categorization: a difference that makes a difference
A theory of cerebellar function
Can programming be liberated from the von {N}eumann style? {A} functional style and its algebra of programs
Intelligence without representation
Functional Analysis
Knowledge and the Flow of Information
Connectionist Models and Their Properties
The Modularity of Mind
The Dynamical Hypothesis in Cognitive Science
The spandrels of {S}an {M}arco and the {P}anglossian paradigm: a critique of the adaptationist programme
On the rate of gain of information
An axiomatic basis for computer programming
Cognition in the Wild
A theory of cerebellar cortex
A logical calculus of the ideas immanent in nervous activity
The magical number seven plus or minus two: some limits on our capacity for processing information
Meaning and Reference
The role of theories in conceptual coherence
Cognitive Psychology
Physical Symbol Systems
Minds, Brains, and Programs
The Mathematical Theory of Communication
The Sciences of the Artificial
Basic Polymorphic Typechecking
Proof-Carrying Code
A â€˜Pileâ€™ Metaphor for Supporting Casual Organization of Information
Finding and Reminding: File Organization from the Desktop
Information Archiving with Bookmarks: Personal Web Space Construction and Organization
Lifestreams: A storage model for personal data
Electronic mail in a working context
A minimal gene set for cellular life derived by comparison of complete bacterial genomes.
Comparative genomics, minimal gene-sets and the last universal common ancestor.
Intelligent information-sharing systems
What Every Computer Scientist Should Know About Floating-Point Arithmetic
Explicit Substitutions
Generative Programming: Methods, Tools, and Applications
Design Research: Methods and Perspectives
Computational interpretations of linear logic
Photon mapping on programmable graphics hardware
Confessions of an Economic Hit Man
An efficient context-free parsing algorithm
A theory of type polymorphism in programming
The Link Prediction Problem for Social Networks
Link prediction in relational data
Linked: The New Science of Networks
Principles of MicroRNAâ€“Target Recognition
BioRAT: extracting biological information from full-length papers
Reliable communication in the presence of failures
Adaptive mixtures of local experts
Learning in Graphical Models
Expectation Propagation for approximate {B}ayesian inference
Probabilistic Inference using {M}arkov Chain {M}onte {C}arlo Methods
Gamma oscillation by synaptic inhibition in a hippocampal interneuronal network model.
A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history.
Why Johnny can't encrypt: A usability evaluation of PGP 5.0
Harnessing curiosity to increase correctness in end-user programming
Security in the Wild: User Strategies for Managing Security as an Everyday, Practical Problem
WebDAVA: An administrator-free approach to Web file-sharing
A probabilistic functional network of yeast genes.
Multidimensional Scaling
Cluster Analysis
Dynamical motifs: building blocks of complex dynamics in sparsely connected random networks.
The core competence of the corporation
CoPub Mapper: mining MEDLINE based on search term co-publication
Information extraction from full text scientific articles: Where are the keywords?
Distribution of information in biomedical abstracts and full-text publications.
Information content in Medline record fields.
Managing in an Age of Modularity
Agent UML: A Formalism for Specifying Multiagent Interaction
Intelligence Without Reason
NEGOTIATION AS A METAPHOR FOR DISTRIBUTED PROBLEM SOLVING
Trends in cooperative distributed problem solving
Multi-Agent Systems: An Introduction to Distributed Artificial Intelligence
The Goal
Commitments and conventions: The foundation of coordination in multi-agent systems.
Modeling Adaptive Autonomous Agents
Evolution and the Theory of Games
Extending UML for Agents
Representing Agent Interaction Protocols in UML
Engineering design : a systematic approach.
The control of discrete event systems
An Evolutionary Approach to Synthetic Biology: Zen and the Art of Creating Life
Object-Oriented Modeling and Design.
Agent-oriented programming
The Artificial Life Roots of Artificial Intelligence
Component Software: Beyond Object-Oriented Programming
Distributed Operating Systems
Complexity: The Emerging Science at the Edge of Order and Chaos
Evolutionary Game Theory
Auction protocols for decentralized scheduling
Robust and Optimal Control
Tools for loading MEDLINE into a local relational database
PreBIND and Textomy â€“ mining the biomedical literature for protein-protein interactions using a support vector machine
Mining microarray expression data by literature profiling
The polyadic pi-calculus: a tutorial
PASBio: predicate-argument structures for event extraction in molecular biology
PubMatrix: a tool for multiplex literature mining
Evaluation of text data mining for database curation: lessons learned from the KDD Challenge Cup.
An ontology for bioinformatics applications
Information extraction in molecular biology
Learning OWL ontologies from free texts
Data mining in bioinformatics using Weka
Adaptive text mining: inferring structure from sequences
Mining the biomedical literature in the genomic era: an overview.
Accomplishments and challenges in literature data mining for biology.
Ecological interface design: theoretical foundations
Communities of Practice: Going One Step Too Far?
Genome-wide non-mendelian inheritance of extra-genomic information in Arabidopsis
The interaction of domain knowledge and linguistic structure in natural language processing: interpreting hypernymic propositions in biomedical text.
How to search a social network
A saliency-based search mechanism for overt and covert shifts of visual attention
Knowledge Networks: Innovation Through Communities of Practice
Recognizing names in biomedical texts: a machine learning approach.
Tagging gene and protein names in biomedical text.
Biomedical literature mining: challenges and solutions in the 'omics' era.
EDGAR: extraction of drugs, genes and relations from the biomedical literature.
Reverse engineering of regulatory networks in human B cells.
Modern {C}ompiler {I}mplementation in {J}ava
Potential of metabolomics as a functional genomics tool.
Metabolomics--the link between genotypes and phenotypes.
Segmentation of 4D cardiac MR images using a probabilistic atlas and the EM algorithm
IntAct: an open source molecular interaction database.
Blended learning: Uncovering its transformative potential in higher education
Requirements engineering in the year 00: a research perspective
The Unified Modeling Language User Guide
Conceptual data modelling for bioinformatics
Nonlinear component analysis as a kernel eigenvalue problem
Narrative As Virtual Reality: Immersion and Interactivity in Literature and Electronic Media (Parallax: Re-Visions of Culture and Society)
The Language of New Media (Leonardo Books)
Narration in the Fiction Film
Typed memory management via static capabilities
Development of unified statistical potentials describing protein-protein interactions.
Multimeric threading-based prediction of protein-protein interactions on a genomic scale: application to the Saccharomyces cerevisiae proteome.
Hot regions in protein--protein interactions: the organization and contribution of structurally conserved hot spot residues.
Protein-protein interactions: structurally conserved residues distinguish between binding sites and exposed protein surfaces.
The role of RNA interference in heterochromatic silencing
Computational Lambda-Calculus and Monads
Can Absence Make a Team Grow Stronger?
Extracting human protein interactions from MEDLINE using a full-sentence parser.
An introduction to variable and feature selection
Using BLAST for identifying gene and protein names in journal articles.
A literature network of human genes for high-throughput analysis of gene expression.
MedMiner: an Internet text-mining tool for biomedical information, with application to gene expression profiling.
Identifying biological themes within lists of genes with EASE
Integration of text- and data-mining using ontologies successfully selects disease gene candidates.
Role of transposable elements in heterochromatin and epigenetic control
Combining Labeled and Unlabeled Data with Co-training
The Bayes Net Toolbox for MATLAB
Probabilistic Reasoning in Intelligent Systems: Networks of plausible inference
Maximum Entropy Markov Models for Information Extraction and Segmentation
Feature-Rich Part-of-Speech Tagging with a Cyclic Dependency Network
The Structure of Scientific Revolutions
City of Bits: Space, Place and the Infobahn
The Mismeasure of Man
Borderline Issues: Social and Material Aspects of Design
Women, Fire and Dangerous Things: What Categories Reveal About the Mind
Why a Diagram is (Sometimes) Worth Ten Thousand Words
The Visual Display of Quantitative Information
Science in Action: How to Follow Scientists and Engineers Through Society
Course in General Linguistics
Metaphor and Thought
Computer Programming as an Art
The Meaning of Things: Domestic Symbols and the Self
New Directions in Cryptography
A Logic of Authentication
A Method for Obtaining Digital Signatures and Public-Key Cryptosystems
Software Engineering: A Practitioner's Approach
Software Engineering
Code and Other Laws of Cyberspace
The Invisible Computer: Why Good Products Can Fail, the Personal Computer Is So Complex, and Information Appliances Are the Solution
Emotional Design: Why We Love (Or Hate) Everyday Things
An Investigation of the {T}herac-25 Accidents
The Art of Human-Computer Interface Design
Bringing Design to Software
Extreme Programming Explained: Embrace Change
A Spiral Model of Software Development and Enhancement
The Social Life of Information
Software Architecture in Practice
Object-Oriented Software Construction
The {C++} Programming Language
Literate Programming
Code Complete: A Practical Handbook of Software Construction
The Pragmatic Programmer: From JourneyMan to Master
Effective {C++}: 50 Specific Ways to Improve Your Programs and Designs
Scripting: Higher Level Programming for the 21st Century
Introduction to Algorithms
Mass Produced Software Components
Software Reuse
Evolution of Networks: From Biological Nets to the {I}nternet and {WWW}
A Brief History of Generative Models for Power Law and Lognormal Distributions
Mean-field theory for scale-free random networks
Optimization in Complex Networks
Optimization by Simulated Annealing
Highly Optimized Tolerance: A Mechanism for Power Laws in Designed Systems
Program Slicing
Software Systems as Complex Networks: Structure, Function, and Evolvability of Software Collaboration Graphs
Refactoring: Improving the Design of Existing Code
Growth Dynamics of the {W}orld-{W}ide {W}eb
The Fractal Geometry of Nature
A Complexity Measure
A Critique of Software Defect Prediction Models
Predicting Fault Incidence Using Software Change History
The {\TeX}book
Error and attack tolerance of complex networks
Structured design
Epidemic Spreading in Scale-Free Networks
Resilience of the Internet to Random Breakdowns
Writing Effective Use Cases
Information Ecologies: Using Technology with Heart
Game Theory: Analysis of Conflict
Reasoning about Knowledge
Exploiting Software: How to Break Code
Introduction to Probability
Database Systems: The Complete Book
An Introduction to Database Systems
Combinatorial Optimization: Algorithms and Complexity
Organizational Learning II: Theory, Method, and Practice
Theory of Linear and Integer Programming
The Unified Modeling Language Reference Manual
Alias Types
Typed Memory Management in a Calculus of Capabilities
Learning Belief Networks in the Presence of Missing Values and Hidden Variables
Information Theory, Inference & Learning Algorithms
The INQUERY Retrieval System
Network Forms of Organization
Gene Regulation at the Single-Cell Level
Strategic behavior in monkeys
Resolution of the Early Placental Mammal Radiation Using Bayesian Phylogenetics
A feature-integration theory of attention.
The Economic Approach to Human Behavior
Introductory Econometrics: A Modern Approach
Globus: A Metacomputing Infrastructure Toolkit
UMEA: translating interaction histories into project contexts
Bananas in space: extending fold and unfold to exponential types
Seeing Like a State: How Certain Schemes to Improve the Human Condition Have Failed (The Institution for Social and Policy St)
Functional programming with bananas, lenses, envelopes and barbed wire
Fold Change in Evolution of Protein Structures
Firefox Hacks: Tips & Tools for Next-Generation Web Browsing (Hacks)
Automatic extraction of gene/protein biological functions from biomedical text
Protein homology detection by HMM-HMM comparison.
Synchronous Data Flow
Getting Things Done: The Art of Stress-Free Productivity
Impact of Similarity Measures on Web-page Clustering
Smart Mobs: The Next Social Revolution
The Cluetrain Manifesto: The End of Business as Usual
Peer-to-Peer : Harnessing the Power of Disruptive Technologies
Synaptic depression and cortical gain control.
Algorithms for estimating relative importance in networks
Economic Action and Social Structure: The Problem of Embeddedness
Type Systems
Noise Propagation in Gene Networks
Methods of combining multiple classifiers and their applications to handwriting recognition
Is online instruction perceived as effective as campus instruction by graduate students in education?
Silicon as a Mechanical Material
Pattern Recognition
Blink : The Power of Thinking Without Thinking
Unsupervised models for named entity classification
Unsupervised Word Sense Disambiguation Rivaling Supervised Methods
Using Unlabeled Data to Improve Text Classification
Detecting Amino Acid Sites Under Positive Selection and Purifying Selection
Codon-Substitution Models for Detecting Molecular Adaptation at Individual Sites Along Specific Lineages
Analyzing the Effectiveness and Applicability of Co-training
Widespread occurrence of antisense transcription in the human genome
Systematic determination of patterns of gene expression during Drosophila embryogenesis
Engineering gene networks to emulate Drosophila embryonic pattern formation.
Architecture Decisions: Demystifying Architecture
The Sciences of the Artificial - 3rd Edition
Sex increases the efficacy of natural selection in experimental yeast populations
Practical byzantine fault tolerance and proactive recovery
Open source clustering software.
Genome-wide strategies for detecting multiple loci that influence complex diseases
Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data
An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)
The timed asynchronous distributed system model
Solving POMDPs by Searching in Policy Space
The Foucault Reader
Estimating F-Statistics for the Analysis of Population Structure
Chaos: Making a New Science
Heuristic evaluation of user interfaces
Solving POMDPs by Searching the Space of Finite Policies
The Small World Web
Embodied Cognition: A field guide
Perceptual symbol systems
Grounding conceptual knowledge in modality-specific systems
Artificial life: organization, adaptation and complexity from the bottom up
Metaphoric Structuring: Understanding time through spatial metaphors
Graph structure in the web
Language as a dynamical system
Conceptual Spaces: The Geometry of Thought
How a cockpit remembers its speeds
Philosophy in the Flesh : The Embodied Mind and Its Challenge to Western Thought
Speaking : From intention to articulation.
What is it like to be a bat?
The Language Instinct : How the Mind Creates Language
Language evolution and information theory
The connectivity structure, giant strong component and centrality of metabolic networks
Space in systems biology of signaling pathways ? towards intracellular molecular crowding in silico
The Social Construction of Technological Systems: New Directions in the Sociology and History of Technology
Structure and Time Evolution of an Internet Dating Community
Social software
An infrastructure for social software
Friendster and publicly articulated social networking
Nonlinear magic: multiphoton microscopy in the biosciences
E-Mail as Spectroscopy: Automated Discovery of Community Structure within Organizations
Weak Ties in Networked Communities
Â“The Art of KnowingÂ”: Social and Tacit Dimensions of Knowledge and the Limits of the Community of Practice
Threaded Identity in Cyberspace: Weblogs & Positioning in the Dialogical Self
Ubicrawler: A scalable fully distributed web crawler
NestedMICA: sensitive inference of over-represented motifs in nucleic acid sequence
Bayes Empirical Bayes Inference of Amino Acid Sites Under Positive Selection
Sequence Turnover and Tandem Repeats in cis-Regulatory Modules in Drosophila
Comparative Genomics of Centrality and Essentiality in Three Eukaryotic Protein-Interaction Networks
A collaborative filtering algorithm and evaluation metric that accurately model the user experience
Getting to Know You: Reputation and Trust in a Two-Person Economic Exchange
Comprehension: A paradigm for cognition
Natural forest management and conservation of biodiversity in tropical forests
Forest restoration in abandoned agricultural land: a case study from East Africa
Conservation in a region of political instability: Bwindi Impenetrable forest, Uganda
Protected area planning in the tropics: Uganda's national system of forest nature reserves
Primate phylogeny: Morphological vs molecular results
Sustainable human resources in a protected area in southwestern Gabon
Biogeography and migration routes of large mammal faunas in South-East Asia during the Late Middle Pleistocene: focus on the fossil and extant faunas from Thailand
Modeling the sustainability of subsistence farming and hunting in the Ituri forest of Zaire
Detecting deception in reputation management
The social cost of cheap pseudonyms
Limited reputation sharing in P2P systems
Random Graphs
A novel genetic system to detect protein-protein interactions.
Does the Internet Increase, Decrease, or Supplement Social Capital? Social Networks, Participation, and Community Commitment
Capitalizing on the Internet: Social Contact, Civic Engagement, and Sense of Community
How does the Internet Affect Social Capital
Usability and biometric verification at the ATM interface
The ENCODE (ENCyclopedia Of DNA Elements) Project
Simple rules yield complex food webs
Mirrors: design principles for meta-level facilities of object-oriented programming languages
The Anatomy of the Grid: Enabling Scalable Virtual Organizations
Learning relational probability trees
An ontology for cell types
Why collective inference improves relational classification
The Ant Colony Optimization Meta-Heuristic
Ant Colony Optimization: A New Meta-Heuristic
Ant Colony System: A Cooperative Learning Approach to the Traveling Salesman Problem
Principled design of the modern Web architecture
Basics of qualitative research: Grounded theory procedures and techniques
The Psychology Of Everyday Things
Peopleware: Productive Projects and Teams   (Second Edition)
Use of innovative technologies on an e-learning course
Attention and performance.
Bandera: extracting finite-state models from Java source code
A machine-oriented logic based on the resolution principle
Software Reflexion Models: Bridging the Gap between Source and High-Level Models
Points-to Analysis in Almost Linear Time
Optimization of Object-Oriented Programs Using Static Class Hierarchy Analysis
Stack-Based Typed Assembly Language
Using programmer-written compiler extensions to catch security holes
ArchJava: Connecting Software Architecture to Implementation
Separation logic: a logic for shared mutable data structures
Efficient, Context-sensitive Pointer Analysis for C programs
Shifts in Selective Visual Attention: Towards the Underlying Neural Circuitry
COMPUTATIONAL MODELLING OF VISUAL ATTENTION
The Player/Stage Project: Tools for Multi-Robot and Distributed Sensor Systems
Planning and Acting in Partially Observable Stochastic Domains
Is it an Agent, or just a Program?: A Taxonomy for Autonomous Agents
Virtual Time
Exploring Cognitive Issues in Visual Information Retrieval
{PDDL} -- The Planning Domain Definition Language
Scenario-Based Analysis of Software Architecture.
Coordination in Software Development.
Computational approaches to motor control
Internal models for motor control and trajectory planning
Small Worlds: The Dynamics of Networks between Order and Randomness (Princeton Studies in Complexity)
Endogenous Technological Change
Small Pieces Loosely Joined: A Unified Theory of the Web
An optimal algorithm for approximate nearest neighbor searching fixed dimensions
How effective developers investigate source code: an exploratory study
Sync: The Emerging Science of Spontaneous Order
Systematic Association of Genes to Phenotypes by Genome and Literature Mining
Ranking the whole MEDLINE database according to a large training set using text indexing.
Prediction and statistics of pseudoknots in RNA structures using exactly clustered stochastic simulations.
Object-based visual attention for computer vision
Modern Graph Theory
Small World: Uncovering Nature's Hidden Networks
RNA folding and unfolding
TRECVID 2004 - An Overview
A delay-tolerant network architecture for challenged internets
Clustering and preferential attachment in growing networks
Dynamical and correlation properties of the Internet
Innovative Redesign and Reorganization of Library Technical Services : Paths for the Future and Case Studies
The true costs of scholarly journal publishing
In a paperless world a new role for academic libraries: providing open access
First Year Wilkinson Microwave Anisotropy Probe (WMAP) Observations: Determination of Cosmological Parameters
Side-chain flexibility in protein-ligand binding: the minimal rotation hypothesis.
Docking and scoring in virtual screening for drug discovery: methods and applications.
Real-time RT-PCR normalisation; strategies and considerations
Minimum information about a microarray experiment (MIAME)-toward standards for microarray data.
Face recognition by elastic bunch graph matching
Seeded Region Growing
An Introduction to Neural Networks
{B}inary {D}ecision {D}iagrams
Voronoi {D}iagrams - {A} {S}urvey of a {F}undamental {G}eometric {D}ata {S}tructure
The Laplacian Pyramid as a Compact Image Code
Eigenfaces vs. Fisherfaces: Recognition Using Class Specific Linear Projection
Face Recognition: Features versus Templates
{S}ymbolic {B}oolean {M}anipulation with {O}rdered {B}inary-{D}ecision {D}iagrams
Digital Image Processing
A {S}urvey of {M}ethods and {S}trategies in {C}haracter {S}egmentation
Ten Lectures on Wavelets
A Discipline of Programming
Fractal Geometry: Mathematical Foundations and Applications
Lecture Notes in Computer Science
The Design and Use of Steerable Filters
Theory of Communication
Computers and Intractability - A Guide to the Theory of NP-Completeness
Feature selection - evaluation, application, and small sample performance
Statistical Pattern Recognition: A Review
Snakes: Active Contour Models
The Structure of Images
Automatic Interpretation and Coding of Face Images Using Flexible Models
Distortion invariant object recognition in the dynamic link architecture
Singularity Detection and Processing with Wavelets
A Wavelet tour of Signal Processing
Mathematical Description of the Responses of Simple Cortical Cells
Theory of Edge Detection
Scale-Space and Edge Detection using Anisotropic Diffusion
Scale-Space Filtering
Pfinder: Real-Time Tracking of the Human Body
A Method for Registration of 3D Shapes
{E}fficient {V}ariants of the {ICP} {A}lgorithm
Object modeling by registration of multiple range images
Iterative point matching for registration of free-form curves and surfaces
Data Mining: Practical Machine Learning Tools and Techniques with Java Implementations
Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments
A review of web searching studies and a framework for future research
A graph-based approach for multiscale shape analysis
Real-time tracking of non-rigid objects using mean shift
A survey of shape analysis techniques
Thirty years of Graph Matching in Pattern Recognition.
Base-Calling of Automated Sequencer Traces Using Phred. I. Accuracy Assessment
Base-Calling of Automated Sequencer Traces Using Phred. II. Error Probabilities
CAP3: A DNA sequence assembly program
Genome Sequence Assembly: Algorithms and Issues
A Whole-Genome Assembly of Drosophila
Prediction of Complete Gene Structures in Human Genomic DNA
Linked: How Everything Is Connected to Everything Else and What It Means for Business, Science, and Everyday Life
Serial analysis of gene expression
A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments
Motivation concepts in behavioral neuroscience
Parsing reward.
Get ready for agile methods, with care
The entity-relationship model - toward a unified view of data
A lattice model of secure information flow
Generalized Linear Models, Second Edition (Chapman & Hall/CRC Monographs on Statistics & Applied Probability)
Applied Linear Statistical Models
Applied Regression Analysis (Wiley Series in Probability and Statistics)
Scale-free characteristics of random networks: the topology of the world-wide web
How Popular is Your Paper? An Empirical Study of the Citation Distribution
Inference of Population Structure Using Multilocus Genotype Data: Linked Loci and Correlated Allele Frequencies
The Author-Topic Model for Authors and Documents
Variational inference for {D}irichlet process mixtures
Convex Optimization
On-line Algorithms in Machine Learning
Model-Based Gaussian and Non-Gaussian Clustering
Mixtures of {D}irichlet processes with applications to {B}ayesian nonparametric problems
A Tutorial on Principal Component Analysis
Modern Information Retrieval
The Infinite Hidden {M}arkov Model
Variational algorithms for approximate {B}ayesian inference
Nonlinear Programming
Modeling annotated data
Latent {D}irichlet Allocation
Hierarchical Topic Models and the Nested {C}hinese Restaurant Process
Bayesian density estimation and inference using mixtures
A {B}ayesian analysis of some nonparametric problems
Learning Probabilistic Relational Models
Stochastic relaxation, {G}ibbs distributions and the {B}ayesian restoration of images
{M}onte {C}arlo sampling methods using {M}arkov chains and their applications
Automatic Image Annotation and Retrieval using Cross-Media Relevance Models
{B}ayes factors
Text Classification from Labeled and Unlabeled Documents using {EM}
Using Maximum Entropy for Text Classification
Latent Semantic Indexing: {A} Probabilistic Analysis
A Language Modeling Approach to Information Retrieval
Probabilistic Models for Unified Collaborative and Content-Based Recommendation in Sparse-Data Environments
Normalized cuts and image segmentation
Hierarchical {D}irichlet processes
{SIMPLI}city: {S}emantics-sensitive Integrated Matching for Picture Libraries
Expectation-propagation for the generative aspect model
Statistical models for text segmentation
A tutorial on hidden {M}arkov models and selected applications in speech recognition.
Factorial Hidden {M}arkov Models
Monte {C}arlo Statistical Methods
Probabilistic Models of Text and Images
Integrating Topics and Syntax
Reputation Network Analysis for Email Filtering
On Computable Numbers, with an application to the Entscheidungsproblem
A comparison of reading paper and on-line documents
An evaluation of methods for modelling species distributions
Do 15-month-old infants understand false beliefs?
Getting formal with dopamine and reward.
Dopamine responses comply with basic assumptions of formal learning theory.
Multiple reward signals in the brain.
Neuronal Coding of Prediction Errors
Review on Computational Trust and Reputation Models
Detecting Pedestrians Using Patterns of Motion and Appearance
Image Parsing: Unifying Segmentation, Detection, and Recognition
The Omega test: a fast and practical integer programming algorithm for dependence analysis
FACETED ID/ENTITY: Managing representation in a digital world
Public displays of connection
Social Translucence: Designing Social Infrastructures that Make Collective Activity Visible
Studying Cooperation and Conflict between Authors with history flow Visualizations
Visualizing Conversation
Women, Fire, and Dangerous Things
The Human Genome Diversity Project: past, present and future.
The Family Video Archive: an annotation and browsing environment for home movies
Media Streams: An Iconic Visual Language for Video Representation
In search for a virtual settlement: An exploration of weblog community boundaries
Seriously Considering Play: Designing interactive learning environments based on the blending of microworlds, simulations, and games
The Data Grid: Towards an architecture for the distributed management and analysis of large scientific datasets
Rethinking the neurological basis of language
Explaining modulation of reasoning by belief
The cognitive revolution: a historical perspective
The neurobiology of social cognition
Moral Cognition and its Neural Constituents
Mind Blindness and the Brain in Autism
Reading the mind in cartoons and stories: an fMRI study of 'theory of mind' in verbal and nonverbal tasks
The neural bases of cognitive conflict and control in moral judgment.
How (and where) does moral judgment work?
The neural basis of language talent in bilinguals
The early history of Smalltalk
A unifying computational framework for motor control and social interaction
At Home in the Universe: The Search for the Laws of Self-Organization and Complexity
MARSYAS: a framework for audio analysis
Three models for the description of language
Subgraphs and network motifs in geometric networks.
The excitement of Google Scholar, the worry of Google Print
Pict: A Programming Language Based on the Pi-Calculus
Practical lessons from protein structure prediction.
The small world of the cerebral cortex
How Much Information?
Guns, Germs, and Steel: The Fates of Human Societies
The Wisdom of Crowds: Why the Many Are Smarter Than the Few and How Collective Wisdom Shapes Business, Economies, Societies and Nations
Book Review
The Proposition Bank: An Annotated Corpus of Semantic Roles
Discriminative Reranking for Natural Language Parsing
Protein structure comparison by alignment of distance matrices
Goal-directed requirements acquisition
Freakonomics: A Rogue Economist Explores the Hidden Side of Everything
A relational model of data for large shared data banks
An efficient algorithm for large-scale detection of protein families
Testing: a roadmap
A Method for Semi-Automatic Ontology Acquisition from a Corporate Intranet
Discovering Conceptual Relations from Text
COMPARATIVE PROTEIN STRUCTURE MODELING OF GENES AND GENOMES
Meaningful change detection in structured data
Semantic Similarity in a Taxonomy: An Information-Based Measure and its Application to Problems of Ambiguity in Natural Language
Maximizing Semantic Relatedness to Perform Word Sense Disambiguation
From manual to semi-automatic semantic annotation: About ontology-based text annotation tools
Rules Rather than Discretion: The Inconsistency of Optimal Plans
LLVA: a low-level virtual instruction set architecture
A model for types and levels of human interaction with automation
GENIES: a natural-language processing system for the extraction  of molecular pathways from journal articles
The Handbook of Brain Theory and Neural Networks
The Neuroscience of Education: More Research Is Needed Before Application
Learning the semantics of words and pictures
An Accurate, Sensitive, and Scalable Method to Identify Functional Sites in Protein Structures
Are protein-protein interfaces more conserved in sequence than the rest of the protein surface?
Identifying DNA-binding proteins using structural motifs and the electrostatic potential
Anatomy of hot spots in protein interfaces
Dehydron: a structurally encoded signal for protein interaction
A simple physical model for binding energy hot spots in protein-protein complexes
Anchor residues in protein-protein interactions
Text categorization with support vector machines: learning with many relevant features
Open access and openly accessible: a study of scientific publications shared via the internet
Free Culture: How Big Media Uses Technology and the Law to Lock Down Culture and Control Creativity
Writing for Computer Science
Improved prediction of protein-protein binding sites using a support vector machines approach
Optimal search strategies for retrieving systematic reviews from Medline: analytical survey
Optimal search strategies for retrieving scientifically strong studies of diagnosis from Medline: analytical survey.
Sharing encountered information: digital libraries get a social life
Exploring the relationship between personal and public annotations
Syntactic abstraction in Scheme
Vivaldi: a decentralized network coordinate system
Security Considerations for Peer-to-Peer Distributed Hash Tables
Petal: Distributed Virtual Disks
Handling Churn in a {DHT}
Designing a {DHT} for low latency and high throughput
Tapestry: A Resilient Global-scale Overlay for Service Deployment
High Availability, Scalable Storage, Dynamic Peer Networks: Pick Two
Pond: the {OceanStore} Prototype
Ivy: A Read/Write Peer-to-peer File System
A Blueprint for Introducing Disruptive Technology into the {I}nternet
Erasure Coding vs. Replication: A Quantitative Comparison
Pastry: Scalable, distributed object location and routing for large-scale peer-to-peer systems
Storage management and caching in {PAST}, a large-scale, persistent peer-to-peer storage utility
Efficient dispersal of information for security, load balancing, and fault tolerance
A case for redundant arrays of inexpensive disks {(RAID)}
Not So Different After All: A Comparison of Methods for Detecting Amino Acid Sites Under Selection
Bayesian Coalescent Inference of Past Population Dynamics from Molecular Sequences
Social Bookmarking Tools (I): A General Review
An Introduction to Variational Methods for Graphical Models
Indexing and access for digital libraries and the internet: Human, database, and domain factors
Principles of Data Mining (Adaptive Computation and Machine Learning)
Time-machine computing: a time-centric approach for the information environment
How do people organize their desks?: Implications for the design of office information systems
"""Finding and Reminding"" Reconsidered"
Experiments in social data mining: The TopicShop system
Social Bookmarking Tools (II): A Case Study - Connotea
Reexamining the cluster hypothesis: Scatter/gather on retrieval results
Co-clustering documents and words using bipartite spectral graph partitioning
Chemical similarity searching
A mathematical theory of citing
Collapse: How Societies Choose to Fail or Succeed
Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids
Algorithms on strings, trees, and sequences : computer science and computational biology
Inconsistency Handling in Multiperspective Specifications
Comparative Genomics of the Eukaryotes
Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling.
Knowledge Representation Issues in Semantic Graphs for Relationship Detection
Genomic mapping by fingerprinting random clones: a mathematical analysis.
Multiclass cancer diagnosis using tumor gene expression signatures
The Character, Functions, and Styles of Instant Messaging in the Workplace
Audience, structure and authority in the weblog community
Discovering statistically significant biclusters in gene expression data.
Interaction and Outeraction: Instant Messaging in Action
Instant architecture
Procedural modeling of cities
Social translucence: an approach to designing systems that support social processes
Improving retrieval performance by relevance feedback
Exploiting Query Repetition and Regularity in an Adaptive Community-Based Web Search Engine
Effects of restricting environmental range of data to project current and future species distributions
Interfaces for end-user information seeking
MPI: A Message-Passing Interface Standard
Empirical bayes methods and false discovery rates for microarrays
In two minds: dual-process accounts of reasoning
The Empirical Case for Two Systems of Reasoning
Prediction of physical proteinâ€“protein interactions
Random Forests
Using social psychology to motivate contributions to online communities
Support-vector networks
Recommending collaboration with social networks: a comparative evaluation
A model for statistical significance of local similarities in structure.
Extinction risk from climate change
A globally coherent fingerprint of climate change impacts across natural systems
Part-of-speech induction from scratch
Part of speech tagging using a network of linear separators
Transformation-based error-driven learning and natural language processing: a case study in part-of-speech tagging
A new statistical parser based on bigram lexical dependencies
Learning to Parse Natural Language with Maximum Entropy Models
Head-driven statistical models for natural language parsing
Automatic extraction of subcategorization from corpora
Giggle: A Framework for Constructing Scalable Replica Location Services
Bayesian learning of probabilistic language models
Word association norms, mutual information, and lexicography
Distributional clustering of English words
Automatic word sense discrimination
Metabotropic glutamate receptor activation in cerebellar Purkinje cells as substrate for adaptive timing of the classically conditioned eye-blink response.
Annotation Technology
The independence of combinatory semantic processing: Evidence from event-related potentials
Structural Features can be Unconserved in Proteins with Similar Folds An Analysis of Side-chain to Side-chain Contacts Secondary Structure and Accessibility
Social network analysis : methods and applications
The Principal Components Analysis of a Graph, and its Relationships to Spectral Clustering
Universal Similarity
affy--analysis of Affymetrix GeneChip data at the probe level.
Exploring the Helix-Coil Transition via All-Atom Equilibrium Ensemble Simulations
Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation
HOW WELL CAN SIMULATION PREDICT PROTEIN FOLDING KINETICS AND THERMODYNAMICS?
Bioconductor: open software development for computational biology and bioinformatics
Chat circles
Multiple-laboratory comparison of microarray platforms.
A global view of pleiotropy and phenotypically derived gene function in yeast
Uncovering the epistemological and ontological assumptions of software designers
Communities of Practice: Going Virtual
Cognitive radio: making software radios more personal
Software radio architecture: a mathematical perspective
The software radio architecture
A Design for a Group Memory System using Ontologies
Imaging brain connectivity in children with diverse reading ability
An Organizational Memory Information System using Ontologies
Data modelling versus ontology engineering
Extending UML to Support Ontology Engineering for the Semantic Web
Data Mining: Practical Machine Learning Tools and Techniques with Java Implementations (The Morgan Kaufmann Series in Data Management Systems)
Experiments with a New Boosting Algorithm
The 4+1 View Model of Architecture
Video Games and the Future of Learning
daf-16: {A}n {HNF}-3/forkhead family member that can function to double the life-span of {C}aenorhabditis elegans.
Strongly typed heterogeneous collections
A Framework for the Comparative Analysis of Organizations
The Iron Cage Revisited: Institutional Isomorphism and Collective Rationality in Organizational Fields
Structural Inertia and Organizational Change
Frame Alignment Processes, Micromobilization, and Movement Participation
McKeachie's Teaching Tips: Strategies, Research, and Theory for College and University Teachers
Designing Social Inquiry
Open Sources: Voices from the Open Source Revolution (O'Reilly Open Source)
What we talk about when we talk about context
Xen and the art of virtualization
The Personal Server: Changing the Way We Think about Ubiquitous Computing
What is beautiful is usable
The Cricket location-support system
A New Location Technique for the Active Office
The Active Badge Location System
The Anatomy of a Context-Aware Application
The Mentality of Crows: Convergent Evolution of Intelligence in Corvids and Apes
Simians, Cyborgs, and Women: The Reinvention of Nature
Email training significantly reduces email defects
Genome evolution reveals biochemical networks and functional modules.
Non-coding RNAs: hope or hype?
Structure-based systems biology: a zoom lens for the cell.
A taxonomy of part-whole relations
A Garbage Can Model of Organizational Choice
Inside PageRank
Toward the Next Generation of Recommender Systems: A Survey of the State-of-the-Art and Possible Extensions
Feature Selection for SVMs
Predicting the orientation of invisible stimuli from activity in human primary visual cortex
Decoding the visual and subjective contents of the human brain
Social network analysis
Friends and neighbors on the web
Computer networks as social networks
Implicit structure and the dynamics of blogspace
Threshold Models of Collective Behavior
Why your friends have more friends than you do
Communities in cyberspace
Centrality in social networks: Conceptual clarification
Social contagion and innovation: Cohesion versus structural equivalence
Internet paradox: A social technology that reduces social involvement and psychological well-being?
Measuring tie strength
The Future of Ideas: The Fate of the Commons in a Connected World
Cybertypes: Race, Ethnicity, and Identity on the Internet
The Internet Galaxy: Reflections on the Internet, Business, and Society
Virtual Ethnography
Neuroeconomics: How Neuroscience Can Inform Economics
Free Culture: The Nature and Future of Creativity
An Interdisciplinary Study Of Information Systems: Christopher Alexander And IS Failure.
How to Read a Book
Numerical Optimization
Software Architecture
Reasoning in Corporate Memory Systems: A Case Study of Group Competencies
Neurobiology of Attention
Evaluating collaborative filtering recommender systems
A synthetic multicellular system for programmed pattern formation.
The transcriptional consequences of mutation and natural selection in Caenorhabditis elegans
A gene expression map of Arabidopsis thaliana development
Combinatorial microRNA target predictions
No unbiased estimator of the variance of K-fold cross-validation
Inference for the generalization error
Frequency of occurrence of numbers in the World Wide Web
Measuring global trends in the status of biodiversity: Red List indices for birds
Relevance weighting of search terms
A genomic view of alternative splicing.
A Unifying Review of Linear Gaussian Models
Images of Organization
The History of Histograms (abridged)
DBMSs on a Modern Processor: Where Does Time Go?
Query Evaluation Techniques for Large Databases.
Review: knowledge management and knowledge management systems: conceptual foundations and research issues
Project massive: a study of online gaming communities
Static scheduling algorithms for allocating directed task graphs to multiprocessors
The Strength of Weak Learnability
Portholes: supporting awareness in a distributed work group
Orangutan cultures and the evolution of material culture.
Public culture and public understanding of genetics: a focus group study.
Social and temporal structures in everyday collaboration
Neural signatures of cell assembly organization.
Neuronal variability: noise or part of the signal?
Choosing the greater of two goods: neural currencies for valuation and decision making
Phylogenomics and the reconstruction of the tree of life
Understanding alternative splicing: towards a cellular code.
MicroRNA biogenesis: coordinated cropping and dicing
LGA: A method for finding 3D similarities in protein structures.
The World Is Flat: A Brief History of the Twenty-first Century
Art of Computer Programming, Volume 1: Fundamental Algorithms (3rd Edition)
Art of Computer Programming, Volume 3: Sorting and Searching (2nd Edition)
Art of Computer Programming, Volume 2: Seminumerical Algorithms (3rd Edition)
Online predicted human interaction database.
Co-occurrence based meta-analysis of scientific texts: retrieving biological relationships between genes
PIBASE: a comprehensive database of structurally defined protein interfaces.
GMAP: a genomic mapping and alignment program for mRNA and EST sequences.
TM-align: a protein structure alignment algorithm based on the TM-score
Using L-systems for modeling source-sink interactions, architecture and physiology of growing trees: the L-PEACH model.
Coherent and Incoherent States of the Radiation Field
Why functional programming matters
Classical Mechanics
STUDYING ONLINE SOCIAL NETWORKS
Google Scholar: the pros and the cons
Geographical and Energy Aware Routing: A Recursive Data Dissemination Protocol for Wireless Sensor Networks
Directed Diffusion for Wireless Sensor Networking
Rumor Routing Algorithm for Sensor Networks
Scheduling algorithms for multiprogramming in a hard-real-time environment
'Opening up OpenURLs with Autodiscovery'
Frangipani: a scalable distributed file system
How do people manage their digital photographs?
PhotoMesa: a zoomable image browser using quantum treemaps and bubblemaps
Analysis of the Intel Pentium's ability to support a secure virtual machine monitor
Metadata Efficiency in Versioning File Systems
What a to-do: studies of task management towards the design of a personal task list manager
"""Stuff goes into the computer and doesn't come out"": a cross-tool study of personal information management"
The marks are on the knowledge worker
The character, value, and management of personal paper archives
Thumbs up? Sentiment Classification using Machine Learning Techniques
Learning Subjective Nouns Using Extraction Pattern Bootstrapping
Learning Extraction Patterns for Subjective Expressions
Thumbs Up or Thumbs Down?  Semantic Orientation Applied to Unsupervised Classification of Reviews.
The <i>nesC</i> language: A holistic approach to networked embedded systems
The predictive power of zero intelligence in financial markets
Computational insights into Caenorhabditis elegans vulval development
MIT OpenCourseWare 
Evolving artificial neural networks
Catastrophic shifts in ecosystems
Catastrophic regime shifts in ecosystems: linking theory to observation
The problem of pattern and scale in ecology
Self-organized patchiness and catastrophic shifts in ecosystems
Community diversity: relative roles of local and regional processes
Fishing down marine food webs
Biodiversity enhances ecosystem reliability
Biodiversity hotspots for conservation priorities
A general hypothesis of species diversity
Biodiversity and ecosystem functioning: current knowledge and future challenges
The metacommunity concept: a framework for multi-scale community ecology
Historical overfishing and the recent collapse of coastal ecosystems
Similarity indices, sample size and diversity
Babel, or the ecological stability discussions: an inventory and analysis of terminology and a guide for avoiding confusion
Estimating terrestrial biodiversity through extrapolation
Confronting the coral reef crisis
Molecular Cell Biology
The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14.
Mechanisms of gene silencing by double-stranded RNA
Mobile Elements: Drivers of Genome Evolution
Summaries of Affymetrix GeneChip Probe Level Data
Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection
A Model for Measurement Error for Gene Expression Arrays
A Direct Approach to False Discovery Rates
Transcription regulation and animal diversity
Significance Analysis of Microarrays Applied to the Ionizing Radiation Response
Applications of DNA tiling arrays for whole-genome analysis
Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays
A uniform system for microRNA annotation
Prediction of plant microRNA targets
Data integration: a theoretical perspective
Directed diffusion: A scalable and robust communication paradigm for sensor networks
Habitat Monitoring: Application Driver for Wireless Communications Technology
Wireless Sensor Networks
Wireless Sensor Networks for Habitat Monitoring
Wireless Sensor Networks: A Survey
End-to-End Arguments in System Design
Fast multiresolution image querying
Neural Networks for Pattern Recognition
Generalized Autoregressive Conditional Heteroskedasticity
Comparing internet and mobile phone usage:digital divides of usage, adoption, and dropouts
Multiple forms of synaptic plasticity triggered by selective suppression of activity in individual neurons.
What is eHealth (3): a systematic review of published definitions.
Prediction of cancer outcome with microarrays: a multiple random validation strategy.
New vistas on amygdala networks in conditioned fear.
Psychobiological mechanisms of resilience and vulnerability: implications for successful adaptation to extreme stress.
Foundations of Language: Brain, Meaning, Grammar, Evolution
Integration of visual and linguistic information in spoken language comprehension
When participants do the capturing: the role of media in diary studies
Teddy: a sketching interface for 3D freeform design
SKETCH: an interface for sketching 3D scenes
Introduction to Algorithms, Second Edition
A synthetic geneâ€“metabolic oscillator
The genome of the social amoeba Dictyostelium discoideum 
Web usage mining: discovery and applications of usage patterns from Web data
The Matthew Effect in Science, II: Cumulative Advantage and the Symbolism of Intellectual Property
Combining test case generation and runtime verification
Combining Naive Bayes and n-Gram Language Models for Text Classification
The Design, Implementation, and Use of the Ngram Statistics Package
Lessons from giant-scale services
Self-perpetuating states in signal transduction: positive feedback, double-negative feedback and bistability.
Informing the design of an information management system with iterative fieldwork
Regulation of noise in the expression of a single gene.
How to make a Biological Switch
Deeper Inside PageRank
Information and Communication Technologies in Everyday Life : A Concise Introduction and Research Guide (New Technologies/New Cultures)
A comparative analysis of the Global Land Cover 2000 and MODIS land cover data sets
Theories of the Information Society (The International Library of Sociology)
Context as a factor in personal information management systems
The selection of prior distributions by formal rules
Systematic interpretation of genetic interactions using protein networks
How users assess Web pages for information seeking
Intermediary's information seeking, inquiring minds, and elicitation styles
Formally citing the Web
The development of innovation systems and the art of innovation management-strategy, control and the culture of innovation
Web Mining: Information and Pattern Discovery on the World Wide Web
Automatic personalization based on Web usage mining
Data Preparation for Mining World Wide Web Browsing Patterns
Web Mining
Web Mining Research: A Survey
Programmable cells: Interfacing natural and engineered gene networks
Status and Trends of Amphibian Declines and Extinctions Worldwide
3DCoffee: combining protein sequences and structures within multiple sequence alignments.
User interface modeling in UMLi
Structure alignment via Delaunay tetrahedralization.
The Feeling of What Happens: Body and Emotion in the Making of Consciousness
Global warming
Using linear algebra for intelligent information retrieval
Using quaternions to calculate RMSD
Ligand Depot: a data warehouse for ligands bound to macromolecules
Protein-based virtual screening of chemical databases. 1. Evaluation of different docking/scoring combinations.
A fast flexible docking method using an incremental construction algorithm.
A detailed comparison of current docking and scoring methods on systems of pharmaceutical relevance
The Computational Beauty of Nature: Computer Explorations of Fractals, Chaos, Complex Systems, and Adaptation
Constructivist, Emergent, and Sociocultural Perspectives in the Context of Developmental Research
The Presentation of Self in Everyday Life
The Focused Organization of Social Ties
A desire to be taught: Instructional consequences of intrinsic motivation
Ancient DNA.
The genome sequence of Drosophila melanogaster.
The genome sequence of the filamentous fungus Neurospora crassa
The Genome Sequence of the Malaria Mosquito Anopheles gambiae
A draft sequence of the rice genome (Oryza sativa L. ssp. japonica).
Genome sequence of the human malaria parasite Plasmodium falciparum.
Splitting the organization and integrating the code: Conway's law revisited
A field study of the software design process for large systems
On the allelic spectrum of human disease.
Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context.
A taxonomy for and analysis of tangible interfaces
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
Emerging frameworks for tangible user interfaces
Operons in Escherichia coli: Genomic analyses and predictions
Representing control in the presence of first-class continuations
Stochastic Processes
Providing high availability using lazy replication
Thin locks: featherweight synchronization for Java
Dive Into Python
Presentation of self on the Web: an ethnographic study of teenage girls' weblogs
Comparative evaluation of eight docking tools for docking and virtual screening accuracy.
Development and validation of a genetic algorithm for flexible docking
Protein Structure Prediction and Structural Genomics
An analysis of core deformations in protein superfamilies.
What to Do (And Not to Do) With Time-Series Cross-Section Data
Social Capital In The Creation of Human Capital
Foundations of Social Theory
Changes in Relative Wages, 1963-1987: Supply and Demand Factors
How Not to Lie with Statistics: Avoiding Common Mistakes in Quantitative Political Science
Dynamic Ideal Point Estimation via Markov Chain Monte Carlo for the U.S. Supreme Court, 1953-1999
A Theory of Justice
Rational Choice and the Framing of Decisions
Slow Technology - Designing for Reflection
Data on the Web: from relations to semistructured data and XML
Diversity in Tropical Rain Forests and Coral Reefs
The evolution of cooperation
AFLP: a new technique for DNA fingerprinting
The evolutionary genetics of speciation
Marine reserves are necessary but not sufficient for marine conservation
The diversity-stability debate
Ecology and the origin of species
Effectiveness of parks in protecting tropical biodiversity
Statistical method for testing the neutral mutation hypothesis by DNA Polymorphism
Is the population size of a species relevant to its evolution?
The estimation of population differentiation with microsatellite markers
Statistical phylogeography
Phylogenetic comparative methods and the geography of speciation
Statistical methods for detecting molecular adaptation
Hybridization as an invasion of the genome
Personalization versus Privacy: An Empirical Examination of the Online ConsumerÃ¢Â€Â™s Dilemma
Ethical issues in genetic research: disclosure and informed consent
A consensus view of fold space: Combining SCOP, CATH, and the Dali Domain Dictionary
A systematic comparison of protein structure classifications: SCOP, CATH and FSSP.
A module map showing conditional activity of expression modules in cancer.
The sequence of the human genome.
Rules of Play : Game Design Fundamentals
Situated Learning: Legitimate Peripheral Participation (Learning in Doing: Social, Cognitive and Computational Perspectives)
Don't Think of an Elephant: Know Your Values and Frame the Debate--The Essential Guide for Progressives
From Barbie to Mortal Kombat: Gender and Computer Games
Life on the Screen: Identity in the Age of the Internet
Practices of Looking: An Introduction to Visual Culture
The Gutenberg Galaxy: The Making of Typographic Man
Phylogenomic inference of protein molecular function: advances and challenges.
Development and testing of a general amber force field
A Well-Behaved Electrostatic Potential Based Method Using Charge Restraints for Deriving Atomic charges: The RESP Model
Replica-exchange molecular dynamics method for protein folding
Creating an Online Dictionary of Abbreviations from MEDLINE
GENIA corpusÃ¢Â€Â”a semantically annotated corpus for bio-textmining
Enhancement of cellular memory by reducing stochastic transitions.
The origin of bursts and heavy tails in human dynamics
Mediators in the Architecture of Future Information Systems
An Overview of {AspectJ}
The Unified Medical Language System (UMLS): integrating biomedical terminology
Digital Ground : Architecture, Pervasive Computing, and Environmental Knowing
New Philosophy for New Media
Remediation: Understanding New Media
Protocol : How Control Exists after Decentralization (Leonardo Books)
Possible Worlds, Artificial Intelligence, and Narrative Theory
HAMLET ON THE HOLODECK
How We Became Posthuman : Virtual Bodies in Cybernetics, Literature, and Informatics
My Mother Was a Computer : Digital Subjects and Literary Texts
Media Ecologies : Materialist Energies in Art and Technoculture (Leonardo Books)
Digital Media Revisited : Theoretical and Conceptual Innovations in Digital Domains
Determining the density of states for classical statistical models: A random walk algorithm to produce a flat histogram
Unsupervised learning of the morphology of a natural language
Growing Up Digital: The Rise of the Net Generation
The Practice of Everyday Life
Publics and Counterpublics
Sorting Things Out: Classification and Its Consequences (Inside Technology)
Behavior in Public Places: Notes on the Social Organization of Gatherings
Distinction: A Social Critique of the Judgement of Taste
Rise of The Network Society (Castells, Manuel. Information Age, 1.) (Vol 1)
Actor Network Theory and After
No Sense of Place: The Impact of Electronic Media on Social Behavior
Grooming, Gossip, and the Evolution of Language
Structural Anthropology
The City
The explicit economics of knowledge codification and tacitness
Collective Intelligence
{D}esign for {P}rivacy in {U}biquitous {C}omputing {E}nvironments
Personal privacy through understanding and action: five pitfalls for designers
Who wants to know what when? privacy preference determinants in ubiquitous computing
Updating XML
Explaining collaborative filtering recommendations
Opinion observer: analyzing and comparing opinions on the Web
The new dynamics of strategy: Sense-making in a complex and complicated world
The role of transparency in recommender systems
Virtual Worlds: A First-Hand Account of Market and Society on the Cyberian Frontier
The emergence of grammar: systematic structure in a new language.
Understanding and sharing intentions: The origins of cultural cognition
The genetical evolution of social behaviour. I.
The evolution of reciprocal altruism
Charting past, present, and future research in ubiquitous computing
Information filtering and information retrieval: two sides of the same coin?
The context toolkit: aiding the development of context-enabled applications
Public goods: a survey of experimental research
The New Production of Knowledge: The Dynamics of Science and Research in Contemporary Societies
We've Got Blog : How Weblogs Are Changing Our Culture
Learning to Extract Symbolic Knowledge from the World Wide Web
Latent Space Approaches to Social Network Analysis
Learning Probabilistic Models of Link Structure
Dependency networks for inference, collaborative filtering and data visualization
BIRDS OF A FEATHER: Homophily in Social Networks
Enhanced hypertext categorization using hyperlinks
Statistics for Spatial Data
Loopy belief propagation for approximate inference: an empirical study
Learning Dynamic Bayesian Networks
The User-Subjective Approach to Personal Information Management Systems
The Zipper
Free Riding on Gnutella
Measurement, Modeling, and Analysis of a Peer-to-Peer File-Sharing Workload
Dissecting BitTorrent: Five Months in a Torrent's Lifetime
Empirical analysis of predictive algorithms for collaborative filtering
Hybrid Recommender Systems: Survey and Experiments
Collaborative filtering with privacy
Collaborative filtering with privacy via factor analysis
Content-boosted collaborative filtering
Recommendation as Classification: Using Social and Content-Based Information in Recommendation
Amazon.com Recommendations: Item-to-Item Collaborative Filtering
Distributing streaming media content using cooperative networking
Measuring {ISP} topologies with {RocketFuel}
A case for end system multicast
Pastry: Scalable, Decentralized Object Location, and Routing for Large-Scale Peer-to-Peer Systems
Zigzag: An efficient peer-to-peer scheme for media streaming
Resilient Peer-to-Peer Streaming
Optimality Theory: Constraint Interaction in Generative Grammar
Genetic variation, classification and 'race'.
Content-based image retrieval at the end of the early years
Evaluating predictive models of species' distributions: criteria for selecting optimal models
Fingerprints of global warming on wild animals and plants
Of grammatology
The visible word: experimental typography and modern art, 1909-1923
Robust Real-time Object Detection
How a personal document's intended use or purpose affects its classification in an office
Where did you put it? Issues in the design and use of a group memory
Neutral evolution of mutational robustness
Frequency domain analysis of noise in autoregulated gene circuits.
Directed evolution of a genetic circuit
Designer gene networks: Towards fundamental cellular control.
Stochasticity in gene expression: from theories to phenotypes.
Privacy and security in library RFID: issues, practices, and architectures
The language of new media
When old technologies were new: thinking about electric communication in the late nineteenth century
Using the biological taxonomy to access biological literature with PathBinderH.
User acceptance of computer technology: a comparison of two theoretical models
Molecular dynamics simulations of biomolecules: long-range electrostatic effects.
The Pricing of Options and Corporate Liabilities
Hierarchical thinking in network biology: the unbiased modularization of biochemical networks
Comparison of network-based pathway analysis methods
A benchmark of multiple sequence alignment programs upon structural RNAs
Design of genetic networks with specified functions by evolution in silico
A survey of user-centered design practice
An empirical study of global software development: distance and speed
Pervasive computing: vision and challenges
Alterations in brain and immune function produced by mindfulness meditation.
MovieLens unplugged: experiences with an occasionally connected recommender system
What is complexity?
Selective integration of multiple biological data for supervised network inference
Prediction of the phenotypic effects of non-synonymous single nucleotide polymorphisms using structural and evolutionary information
Support vector machine active learning for image retrieval
Head First Design Patterns
Decisions under uncertainty: probabilistic context influences activation of prefrontal and parietal cortices.
Bayesian measures of model complexity and fit
Modeling a synthetic multicellular clock: Repressilators coupled by quorum sensing
Testing natural selection vs. genetic drift in phenotypic evolution using quantitative trait locus data.
The roles of digital libraries in teaching and learning
Computer Support for Knowledge-Building Communities
Architectural Mismatch: Why Reuse Is So Hard
Closing the gap: CPU and FPGA trends in sustainable floating-point BLAS performance
Engaging By Design: How Engagement Strategies in Popular Computer and Video Games Can Inform Instructional Design
Proteinâ€“protein interactions: organization, cooperativity and mapping in a bottom-up Systems Biology approach
A Theory of Rational Addiction
Recommender Systems Research: A Connection-Centric Survey
Prospects for Biodiversity
A SWOT Analysis of the Field of Virtual Reality Rehabilitation and Therapy
An autonomous molecular computer for logical control of gene expression
Designing for improved social responsibility, user participation and content in on-line communities
There is more to context than location
Dualisms, Hierarchies and Gender in Engineering
Scheduler activations: effective kernel support for the user-level management of parallelism
Model-based feedback in the language modeling approach to information retrieval
Random Data: Analysis and Measurement Procedures
The Local Structure of Turbulence in Incompressible Viscous Fluid for Very Large {R}eynolds' Numbers
A First Course in Turbulence
Resource Containers: A New Facility for Resource Management in Server Systems
Scale and performance in the Denali isolation kernel
Lightweight remote procedure call
Congestion control for high bandwidth-delay product networks
A fast file system for UNIX
The design and implementation of a log-structured file system
Exokernel: an operating system architecture for application-level resource management
Capriccio: scalable threads for internet services
SEDA: an architecture for well-conditioned, scalable internet services
Measuring the evolution of transport protocols in the internet
Experience with processes and monitors in Mesa
Reasoning the Fast and Frugal Way: Models of Bounded Rationality,
Adaptive Hypermedia
AT THE HEART OF IT ALL: THE CONCEPT OF PRESENCE
Improving the reliability of commodity operating systems
Y-chromosome specific alleles and haplotypes in European and Asian populations: linkage disequilibrium and geographic diversity.
The Impact of Multihop Wireless Channel on TCP Throughput and Loss
A comparison of mechanisms for improving TCP performance over wireless links
Analysis of TCP Performance Over Mobile Ad Hoc Networks
How bad is selfish routing?
On selfish routing in internet-like environments
Comprehensive evaluation of protein structure alignment methods: scoring by geometric measures.
Dummynet: a simple approach to the evaluation of network protocols
The Art of Computer Systems Performance Analysis: Techniques for Experimental Design, Measurement, Simulation, and Modeling
The Performance of {TCP/IP} for Networks with High Bandwidth-Delay Products and Random Loss
Equation-based congestion control for unicast applications
Promoting the use of end-to-end congestion control in the Internet
RTP: A Transport Protocol for Real-Time Applications
Modeling TCP Throughput: A Simple Model and its Empirical Validation
Using {GPS} to learn significant locations and predict movement across multiple users
Rhythm modeling, visualizations and applications
Bayesian Networks without Tears
Version Control with Subversion
Location disclosure to social relations: why, when, \& what people want to share
Social Serendipity: Mobilizing Social Software
Reality Mining: Sensing Complex Social Systems
GeoNotes: Social and Navigational Aspects of Location-Based Information Systems
Epidemic Information Dissemination in Distributed Systems
We the Media
Mobility increases the capacity of ad hoc wireless networks
Re-place-ing space: the roles of place and space in collaborative systems
On Agent-based Software Engineering
Dynamic Source Routing in Ad Hoc Wireless Networks
Capacity of Ad Hoc Wireless Networks
The Image of the City
Visual Models of Plants Interacting with Their Environment
Preserving Privacy in Environments with Location-Based Applications
Software Agents: An Overview
"Unpacking ""privacy"" for a networked world"
Technopoly: The Surrender of Culture to Technology
A Survey of Temporal Knowledge Discovery Paradigms and Methods
Leonardo's Laptop: Human Needs and the New Computing Technologies
Learning Patterns of Activity Using Real-Time Tracking
Digital Artifacts for Remembering and Storytelling: PostHistory and Social Network Fragments
The Computer for the 21st Century
How to Model an Internetwork
A message ferrying approach for data delivery in sparse mobile ad hoc networks
Molecular surface recognition: determination of geometric fit between proteins and their ligands by correlation techniques
An empirical study of speed and communication in globally distributed software development
The Craft of Research, 2nd edition (Chicago Guides to Writing, Editing, and Publishing)
What Video Games Have to Teach Us About Learning and Literacy
The impact of DHT routing geometry on resilience and proximity
Improvement of comparative model accuracy by free-energy optimization along principal components of natural structural variation.
Research design : qualitative, quantitative, and mixed method approaches
The Hacker Ethic
Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution.
Less is More: Active Learning with Support Vector Machines
GOstat: find statistically overrepresented Gene Ontologies within a group of genes.
An introduction to kernel-based learning algorithms
Large margin classification using the perceptron algorithm
A metrics suite for object oriented design
Protein flexibility predictions using graph theory.
An algorithm for constraint-based structural template matching: application to 3D templates with statistical analysis.
TESS: a geometric hashing algorithm for deriving 3D coordinate templates for searching structural databases. Application to enzyme active sites.
Recognition of functional sites in protein structures.
Access path selection in a relational database management system
You and Your Research
A 3D Similarity Method for Scaffold Hopping from Known Drugs or Natural Ligands to New Chemotypes
How Convincing is Mr. Data's Smile: Affective Expressions of Machines
Design-oriented human-computer interaction
Dynamics of the p53-Mdm2 feedback loop in individual cells
Principles of mixed-initiative user interfaces
Genetic Structure of the Purebred Domestic Dog
Comprehension of Causeâ€“Effect Relations in a Tool-Using Task by Chimpanzees (Pan troglodytes)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
Knowledge-based scoring function to predict protein-ligand interactions.
Virtual Screening Using Proteinâˆ’Ligand Docking:â€‰ Avoiding Artificial Enrichment
A method for simultaneous alignment of multiple protein structures.
Does the IEEE 802.11 MAC protocol work well in multihop wireless ad hoc networks?
End-to-end performance and fairness in multihop wireless backhaul networks
Dynamic taxonomies: a model for large information bases
Partitioning digital worlds: focal and peripheral awareness in multiple monitor use
Assistive technology in elderly care
Social Bookmarking Tools (I)
Discovery and Integration of Mobile Communications in Everyday Life
Why are mobile phones annoying?
`My blog is me': Texts and persons in UK online journal culture (and anthropology)
Protein docking using spherical polar Fourier correlations.
Synergy, redundancy, and independence in population codes, revisited.
The brain's concepts: The role of the sensory-motor system in conceptual knowledge
Emotion experience
MADE4: an R package for multivariate analysis of gene expression data.
Modularized learning of genetic interaction networks from biological annotations and mRNA expression data
Identification of transcription factor binding sites with variable-order Bayesian networks
Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases
Governing the Commons : The Evolution of Institutions for Collective Action
In the Bubble : Designing in a Complex World
Capturing knowledge of user preferences: ontologies in recommender systems
Social creativity: turning barriers into opportunities for collaborative design
Ways of Seeing
Kernel methods for relation extraction
Establishing and Maintaining Long-Term Human-Computer Relationships
Hotspots of mammalian chromosomal evolution.
A high-resolution recombination map of the human genome
Mobile learning with a mobile game: design and motivational effects
Evolutionary psychology: the emperor's new paradigm
Cyberliteracy: Navigating the Internet with Awareness
Book reviews
A Survey of Adaptive Optimization in Virtual Machines
Matrix Computations
Digital Signal Processing
Fundamentals of Wireless Communication
A simple transmit diversity technique for wireless communications
The sybil attack
A Hacker Manifesto
Democratizing Innovation
Networks of Innovation: Change and Meaning in the Age of the Internet
How close are we to understanding v1?
How do people organize their desktops?
Semantic Web Service Architecture -- Evolving Web Service Standards toward the Semantic Web
A generalized processor sharing approach to flow control in integrated services networks: the single-node case
Web services: been there, done that?
Ontology evolution: Not the same as schema evolution
Foundations for service ontologies: aligning OWL-S to dolce
The Properties of Known Drugs. 1. Molecular Frameworks
Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage
00-19.pdf (application/pdf Object)
Consolidating the set of known human protein-protein interactions in preparation for large-scale mapping of the human interactome
Relations in biomedical ontologies.
Spin-glass theory for pedestrians
Mode-coupling theory
Everything Bad Is Good for You: How Today's Popular Culture Is Actually Making Us Smarter
{PROMPT}: Algorithm and Tool for Automated Ontology Merging and Alignment
The PROMPT suite: Interactive tools for ontology merging and mapping
Complement Factor H Polymorphism in Age-Related Macular Degeneration
Coincident but distinct messages of midbrain dopamine and striatal tonically active neurons.
RASCAL: Calculation of Graph Similarity using Maximum Common Edge Subgraphs
prefuse: a toolkit for interactive information visualization
User interactions with everyday applications as context for just-in-time information access
Hipikat: recommending pertinent software development artifacts
TaskTracer: a desktop environment to support multi-tasking knowledge workers
Optimizing search by showing results in context
Using collaborative filtering to weave an information tapestry
Navigating and querying code without getting lost
Keeping found things found on the web
Oxytocin increases trust in humans
Why Heather Can Write: Informal Education, Media Literacy, and The Potter Wars
Scalability and Accuracy in a LargeScale Network Emulator
Evolutionarily conserved networks of residues mediate allosteric communication in proteins
Viral metagenomics
Community genomics in microbial ecology and evolution
The metagenomics of soil
Use of logic relationships to decipher protein network organization.
Mining navigation history for recommendation
Action plans used in action observation
On the recommending of citations for research papers
The Economics of Technology Sharing: Open Source and Beyond
The WSLA Framework: Specifying and Monitoring Service Level Agreements for Web Services
Approximation Algorithms for Classification Problems with Pairwise Relationships: Metric Labeling and Markov Random Fields
Shared Memory Consistency Models: A Tutorial
{RAID}: High-Performance, Reliable Secondary Storage
Model Checking and Abstraction
Computer Architecture: A Quantitative Approach
Transactional Memory: Architectural Support for Lock-Free Data Structures
The SPARC Architecture Manual (Version 8)
The {SPLASH-2} Programs: Characterization and Methodological Considerations
Measuring the Functional Load of Phonological Contrasts
Discrimination of non-native consonant contrasts varying in perceptual assimilation to the listener's native phonological system.
Monadic Datalog and the Expressive Power of Languages for Web Information Extraction
Rewrite Systems
How Do Networks Become Navigable?
Ego-centered networks and the ripple effect
Bleu: a method for automatic evaluation of machine translation
Multimodal Discourse: The Modes and Media of Contemporary Communication
Models of cooperation based on the Prisoner's Dilemma and the Snowdrift game
Formal requirements for virtualizable third generation architectures
Poisson image editing
Motion graphs
Graphcut textures: image and video synthesis using graph cuts
Stemming algorithms: A case study for detailed evaluation
An algorithm for suffix stripping
{The Unified Software Development Process}
A Formal Basis for Architectural Connection
Writing Ethnographic Fieldnotes (Chicago Guides to Writing, Editing, and Publishing)
Computational Mechanics: Pattern and Prediction, Structure and Simplicity
An Algorithm for Pattern Discovery in Time Series
Slow Feature Analysis: Unsupervised Learning of Invariances
Relations between the statistics of natural images and the response properties of cortical cells
Spatiotemporal energy models for the perception of motion
A Model of Neuronal Responses in Visual Area MT
Invariant face and object recognition in the visual system
Neocognitron: A self-organizing neural network model for a mechanism of pattern recognition unaffected by shift in position
Hierarchical models of object recognition in cortex
Efficient coding of natural scenes in the lateral geniculate nucleus: experimental test of a computational theory
Sparse Coding of Sensory Inputs
Learning invariance from transformation sequences
Determining Optical Flow
PAST: A Large-Scale, Persistent Peer-to-Peer Storage Utility
TaskView: design and evaluation of a task-based email interface
Ligand selectivity and competition between enzymes in silico.
The structure of the potassium channel: molecular basis of K+ conduction and selectivity
Control of ion selectivity in potassium channels by electrostatic and dynamic properties of carbonyl ligands
Semantic similarity measures as tools for exploring the gene ontology.
The geography of coordination: dealing with distance in R\&amp;D work
At Home with Ubiquitous Computing: Seven Challenges
System support for pervasive applications
A middleware infrastructure for active spaces
Vizster: Visualizing Online Social Networks
Bunch: A Clustering Tool for the Recovery and Maintenance of Software System Structures
Small-world phenomena and the dynamics of information
Small-World File-Sharing Communities
Video blogging: content to the max
Algorithms for graph partitioning: A survey
The Simultaneous Evolution of Author and Paper Networks
Low response variability in simultaneously recorded retinal, thalamic, and cortical neurons.
Analysis and Visualization of Social Networks
Experiments on Graph Clustering Algorithms
Functional genome annotation through phylogenomic mapping
Comparative metagenomics of microbial communities.
The Application of Petri Nets to Workflow Management
Basics of Qualitative Research : Techniques and Procedures for Developing Grounded Theory
The Discovery of Grounded Theory: Strategies for Qualitative Research
The dangers of replication and a solution
Interorganizational Collaboration and the Locus of Innovation: Networks of Learning in Biotechnology
On the mathematical foundations of learning
Inside the search process: Information seeking from the user's perspective
Shirky: Ontology is Overrated -- Categories, Links, and Tags
Database resources of the National Center for Biotechnology Information.
Rate control in communication networks: shadow prices, proportional fairness and stability
Learning to Control a Brain-Machine Interface for Reaching and Grasping by Primates
Neuronal Population Coding of Movement Direction
Forward models: Supervised learning with a distal teacher
A review of methods for spike sorting: the detection and classification of neural action potentials
A model of the ventricular cardiac action potential. Depolarization, repolarization, and their interaction
Adaptive Representation of Dynamics During Learning of a Motor Task
Independent component analysis: an introduction
Entropy and Information in Neural Spike Trains
Direct Cortical Control of 3D Neuroprosthetic Devices
Optimal feedback control as a theory of motor coordination
Real-time prediction of hand trajectory by ensembles of cortical neurons in primates
Control of a two-dimensional movement signal by a noninvasive brain-computer interface in humans
Multiple paired forward and inverse models for motor control
Internal models in the cerebellum
Weblogs as a bridging genre
Motion doodles: an interface for sketching character motion
The next 700 programming languages
Modeling Languages: Syntax, Semantics and All That Stuff - Part {I}: The Basic Stuff
Linking {UML} models of design and requirement
Fifteen Minutes of Fame: The Dynamics of Information Access on the Web
Ontology versioning in an ontology management framework
Ontology mapping: the state of the art
Assessment and classroom learning
c-Myc-regulated microRNAs modulate E2F1 expression
MicroRNA expression profiles classify human cancers
A microRNA polycistron as a potential human oncogene
Uncovering the overlapping community structure of complex networks in nature and society
Is there chaos in the brain? I. Concepts of nonlinear dynamics and methods of investigation.
The Use of Edge-Betweenness Clustering to Investigate Biological Function in Protein Interaction Networks
Information theory and neural coding.
Don't Make Me Think! A Common Sense Approach to Web Usability
Detecting communities in large networks
Hegemony and Socialist Strategy: Towards a Radical Democratic Politics
The Consequences of Modernity
The Constitution of Society: Outline of the Theory of Structuration
Using Trust in Recommender Systems: An Experimental Analysis
Interactive pedagogical drama
BEAT: the Behavior Expression Animation Toolkit
Improving Category Specific Web Search by Learning Query Modifications
Using Web structure for classifying and describing Web pages
Is there chaos in the brain? II. Experimental evidence and related models.
Classifier Fitness Based on Accuracy
Inparanoid: a comprehensive database of eukaryotic orthologs.
Applied Software Architecture
Efficient belief propagation for early vision
Open Source GIS: A GRASS GIS Approach
Scheduling algorithms
Monitoring Streams - A New Class of Data Management Applications
Comparison of Schema Matching Evaluations
Automatic clustering of orthologs and in-paralogs from pairwise species comparisons.
A Kernel Method for Multi-Labelled Classification
Can we trust trust?
Revisiting the JDL Data Fusion Model II
Politics of Nature: How to Bring the Sciences into Democracy
Diversity of the human intestinal microbial flora.
A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases.
Discovery of uncharacterized cellular systems by genome-wide analysis of functional linkages
Computational prediction of human metabolic pathways from the complete human genome.
Modeling Market Mechanism with Minority Game
Theories of Communication Networks
Resource overbooking and application profiling in shared hosting platforms
Information as thing
Speech Technology in ComputerAided Language Learning: Strengths and Limitations of a New CALL Paradigm
A Theory of Program Size Formally Identical to Information Theory
Handbook of Human-Computer Interaction
Inferring Statistical Complexity
A decade of CASP: progress, bottlenecks and prognosis in protein structure prediction.
Blind Construction of Optimal Nonlinear Recursive Predictors for Discrete Sequences
Writing good software engineering research papers: minitutorial
Culture and Technology
Evolution of web services in bioinformatics
Stochastic reaction-diffusion simulation with MesoRD
Prediction of protein-protein interactions by combining structure and sequence conservation in protein interfaces.
LS-SNP: large-scale annotation of coding non-synonymous SNPs based on multiple information sources.
Looking for Information: A Survey of Research on Information Seeking, Needs, and Behavior (Library and Information Science)
Unifying collaborative and content-based filtering
Item-based collaborative filtering recommendation algorithms
Recommender Systems
Recommender systems in e-commerce
Analysis of recommendation algorithms for e-commerce
The Evolving Philosophers Problem: Dynamic Change Management
Acme: an architecture description interchange language
An Introduction to the Psychology of Hearing
Serum response factor regulates a muscle-specific microRNA that targets Hand2 during cardiogenesis
Why are economists sceptical about agent-based simulations?
Making the Most of Statistical Analyses: Improving Interpretation and Presentation
Social Network Analysis: a Handbook
Lineage retrieval for scientific data processing: a survey
Support Vector Machine Active Learning with Applications to Text Classification
A Gentle Tutorial on the EM Algorithm and its Application to Parameter Estimation for Gaussian Mixture and Hidden Markov Models
SCOP database in 2004: refinements integrate structure and sequence family data
SCOP: a structural classification of proteins database.
CATH--a hierarchic classification of protein domain structures.
The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis.
Mapping protein family interactions: intramolecular and intermolecular protein family interaction repertoires in the PDB and yeast1
Use of Speech Recognition in Computer-Assisted Language Learning
Is NonNative Pronunciation Modelling Necessary
Tree-Maps: a space-filling approach to the visualization of hierarchical information structures
Lowland Forest Loss in Protected Areas of Indonesian Borneo
HORIZONTAL GENE TRANSFER IN PROKARYOTES: Quantification and Classification1
Lateral gene transfer and the nature of bacterial innovation
Visually mining and monitoring massive time series
Cluster and Calendar Based Visualization of Time Series Data
The closest BLAST hit is often not the nearest neighbor.
Protein Interaction Mapping in C. elegans Using Proteins Involved in Vulval Development
An automated method for finding molecular complexes in large protein interaction networks.
The use of dynamic contexts to improve casual internet searching
Functional topology in a network of protein interactions.
The Construction of Social Reality
Alignment of whole genomes.
Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data
Assessing experimentally derived interactions in a small world
Preferential attachment in the protein network evolution.
Gaining confidence in high-throughput protein interaction networks
Making large-scale support vector machine learning practical
Educational Blogging
A Survey of Eigenvector Methods for Web Information Retrieval
A statistical framework for genomic data fusion
Text mining for metabolic pathways, signaling cascades, and protein networks.
A probabilistic analysis of the Rocchio algorithm with TFIDF for text categorization
Web services are not distributed objects
Domain-Specific Keyphrase Extraction
Ontology learning for the Semantic Web
Comparing protein-ligand docking programs is difficult.
A Roadmap of Agent Research and Development
Distributed Intelligent Agents
Modeling TCP Latency
Computer Networking: A Top-Down Approach Featuring the Internet
Attention, Intentions, and the Structure of Discourse
PISCES: a protein sequence culling server.
Codon bias and base composition are poor indicators of horizontally transferred genes.
A Taxonomy of Data Grids for Distributed Data Sharing, Management and Processing
Social Consequences of Internet Use: Access, Involvement, and Interaction
Virtual Culture : Identity and Communication in Cybersociety
Doing Internet Research: Critical Issues and Methods for Examining the Net
Internet Communication and Qualitative Research: A Handbook for Researching Online (New Technologies for Social Research series)
The Internet in Everyday Life (The Information Age)
The Virtual Community: Homesteading on the Electronic Frontier
The Psychology of the Internet
The World Wide Web and Contemporary Cultural Theory : Magic, Metaphor, Power
Design for Community: The Art of Connecting Real People in Virtual Places
Online Communities: Designing Usability and Supporting Sociability
Online Communities: Commerce, Community Action and the Virtual University (Hewlett-Packard Professional Books)
Hackers: Heroes of the Computer Revolution
{SIP: Session Initiation Protocol}
The value of the world's ecosystem services and natural capital
Markov chain Monte Carlo without likelihoods
From Ukkonen to McCreight and Weiner: A Unifying View of Linear-Time Suffix Tree Construction
Instrumental interaction: an interaction model for designing post-WIMP user interfaces
Post-WIMP user interfaces
Designing interaction, not interfaces
A new progressive-iterative algorithm for multiple structure alignment.
Predicting subcellular localization of proteins based on their N-terminal amino acid sequence.
Simplifying annotation support for real-world-settings: a comparative study of active reading
Dataflow Process Networks
Pin: building customized program analysis tools with dynamic instrumentation
Threads cannot be implemented as a library
The Visual Display of Quantitative Information, 2nd edition
A highly unexpected strong correlation between fixation probability of nonsynonymous mutations and mutation rate
Subtle motifs: defining the limits of motif finding algorithms.
oPOSSUM: identification of over-represented transcription factor binding sites in co-expressed genes
Borrowed-virtual-time (BVT) scheduling: supporting latency-sensitive threads in a general-purpose scheduler
Making by making strange: Defamiliarization and the design of domestic technologies
Mathematical Writing (Mathematical Association of America Notes)
Using a library of structural templates to recognise catalytic sites and explore their evolution in homologous families.
MrBayes 3: Bayesian phylogenetic inference under mixed models
Beyond Prototypes: Challenges in Deploying Ubiquitous Systems
Understanding email use: predicting action on a message
Microstructure of a spatial map in the entorhinal cortex.
Mining generalized association rules
The Anarchist In The Library: How the Clash Between Freedom and Control Is Hacking the Real World and Crashing the System
Resonant Optical Antennas
A unified model for perceptual learning.
Folksonomies: power to the people
The Patterns of Natural Variation in Human Genes.
The macroscopic behavior of the TCP congestion avoidance algorithm
Empirically derived analytic models of wide-area TCP connections
Why we don't know how to simulate the Internet
People, Organizations, and Process Improvement
Protein interaction networks from yeast to human.
Shield: vulnerability-driven network filters for preventing known vulnerability exploits
Structural analysis of network traffic flows
Automatic annotation of protein function.
The Humane Interface: New Directions for Designing Interactive Systems
The Printing Press as an Agent of Change (Volumes 1 and 2 in One)
Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms
A model of grounded language acquisition: Sensorimotor features improve lexical and grammatical learning
False discovery rate, sensitivity and sample size for microarray studies
Discovering molecular functions significantly related to phenotypes by combining gene expression data and biological information
Personal chronicling tools for enhancing information archival and collaboration in enterprises
Knowledge characteristics of communities of practice
Regression Quantiles
Theoretical Neuroscience: Computational and Mathematical Modeling of Neural Systems
Principles of Neural Science
An Introduction to MultiAgent Systems
Optimizing search engines using clickthrough data
Music Sharing as a Computer Supported Collaborative Application
Prediction of protein function using protein-protein interaction data
Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings.
A survey of optimization by building and using probabilistic models
The state of the art in automating usability evaluation of user interfaces
Instructions and descriptions: some cognitive aspects of programming and similar activities
The GOMS family of user interface analysis techniques: comparison and contrast
Listening in: practices surrounding iTunes music sharing
Invariant visual representation by single neurons in the human brain.
Extracellular electron transfer via microbial nanowires
Contact force measurements and stress-induced anisotropy in granular materials
The invasion of language: emergence, change and death
Duty to disclose in medical genetics: a legal perspective.
The duty to recontact: attitudes of genetics service providers.
Network Robustness and Fragility: Percolation on Random Graphs
The Uses of Argument
Geographic Information Systems and Science
A model agreement for genetic research in socially identifiable populations.
Annotea: an open RDF infrastructure for shared Web annotations
Lessons learned from real DSL experiments
Modeling Bounded Rationality
Evolutionary Computation: Toward a New Philosophy of Machine Intelligence
Induction: processes of inference, learning and discovery
An evolutionary algorithm that constructs recurrent neural networks
No Free Lunch Theorems for Optimization
A Survey of Decision Tree Classifier Methodology
Evolving Neural Networks through Augmenting Topologies
An Introduction to Collective Intelligence
Six Degrees: the Science of a Connected Age
On the minority game: Analytical and numerical studies
Turtles, Termites, and Traffic Jams: Explorations in Massively Parallel Microworlds
Small Worlds : The Dynamics of Networks between Order and Randomness
Emergence of Cooperation and Organization in an Evolutionary Game
Emergence: From Chaos to Order
Complexity and the Economy
Holistic twig joins: optimal xml pattern matching
ProbCons: Probabilistic consistency-based multiple sequence alignment.
Binding MOAD (Mother Of All Databases).
Support vector machines: hype or hallelujah?
A comparative study of motor-protein motions by using a simple elastic-network model
Development as Freedom
Local Computations with Probabilities on Graphical Structures and Their Application to Expert Systems
Nonlinear protein degradation and the function of genetic circuits.
Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps
Social networks and Internet connectivity effects
A Hierarchical Dirichlet Language Model
Metadata? Thesauri? Taxonomies? Topic maps! Making sense of it all
Essential dynamics of proteins
Applied Regression Analysis, Linear Models, and Related Methods
Acting Optimally in Partially Observable Stochastic Domains
The Weighted Majority Algorithm
Flexible camera calibration by viewing a plane from unknown orientations
A Flexible New Technique for Camera Calibration
{Index Structures for Path Expressions}
{Efficient Algorithms for Processing XPath Queries}
{Processing XML Streams with Deterministic Automata and Stream Indexes}
{DataGuides: Enabling Query Formulation and Optimization in Semistructured Databases}
A Pragmatic View of Knowledge and Boundaries: Boundary Objects in New Product Development
Technological frames: making sense of information technology in organizations
GÃ¶del, Escher, Bach: An Eternal Golden Braid (20th anniversary edition with a new preface by the author)
Cultural transmission of tool use in bottlenose dolphins
Open Access Bibliography : Liberating Scholarly Literature with E-Prints and Open Access Journals
The functions of the orbitofrontal cortex.
Developmental Plasticity and Evolution
Conservation of Orientation and Sequence in Protein Domain-Domain Interactions
The Relationship between the Flexibility of Proteins and their Conformational States on Forming Protein-Protein Complexes with an Application to Protein-Protein Docking
The relationship between domain duplication and recombination.
A neutral model of transcriptome evolution
The yeast coexpression network has a small-world, scale-free architecture and can be explained by a simple model
Integrative analysis of the cancer transcriptome.
From signatures to models: understanding cancer using microarrays.
Thermodynamic calculations in biological systems
Array comparative genomic hybridization and its applications in cancer.
A Survey of General-Purpose Computation on Graphics Hardware
Cellular disco: resource management using virtual clusters on shared-memory multiprocessors
Learning in Graphical Models (Adaptive Computation and Machine Learning)
Geeks, Social Imaginaries, and Recursive Publics
Biclustering Algorithms for Biological Data Analysis: A Survey
Information Seeking in Electronic Environments (Cambridge Series on Human-Computer Interaction)
Sharing Nicely: On Shareable Goods and the Emergence of Sharing as a Modality of Economic Production
Hackers and Painters: Big Ideas from the Computer Age
Climate change and marine plankton
Bundle Adjustment -- A Modern Synthesis
Visual Programming
PARADISE: a framework for evaluating spoken dialogue agents
Microarray data normalization and transformation
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
From patterns to pathways: gene expression data analysis comes of age
Service-Oriented Science
"Cyberinfrastructure: Empowering a ""Third Way"" in Biomedical Research"
Life on the edge: supporting collaboration in location-based experiences
Designing the spectator experience
Probing the local dynamics of nucleotide-binding pocket coupled to the global dynamics: myosin versus kinesin.
Wide Open Spaces: Wikis, Ready or Not
Data Cube: A Relational Aggregation Operator Generalizing Group-By, Cross-Tab, and Sub-Totals
Surfing the p53 network
A Simple Algorithm for Identifying Negated Findings and Diseases in Discharge Summaries
Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies1
Discovery of novel transcription factor binding sites by statistical overrepresentation.
Computational identification of Cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae1
Design and construction of a realistic digital brain phantom.
{MOLSCRIPT}: a program to produce both detailed and schematic plots of protein structures
The CCP4 Suite: Programs for Protein Crystallography
Potential for biomolecular imaging with femtosecond {X-ray} pulses
Analysis of catalytic residues in enzyme active sites.
{LIGPLOT}: A program to generate schematic diagrams of protein-ligand interactions
{PROCHECK}: a program to check the stereochemical quality of protein structures
Predictive identification of exonic splicing enhancers in human genes.
The {ClustalX} windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
A structural perspective on protein-protein interactions
The interpretation of protein structures: estimation of static accessibility
The atomic structure of protein-protein recognition sites
Not By Genes Alone : How Culture Transformed Human Evolution
Research Through Practice: Positioning the Practitioner as Researcher
Monadic Parsing in Haskell
Tackling the Awkward Squad: monadic input/output, concurrency, exceptions, and foreign-language calls in Haskell
Software Engineering (6th Edition)
Going digital: A look at assumptions underlying digital libraries
Automatic resource compilation by analyzing hyperlink structure and associated text
Term-weighting approaches in automatic text retrieval
A Computational Model of Trust and Reputation
Searching the Web
Crawling the Hidden Web
Design Patterns
How dynamic is the web?
A large-scale study of the evolution of Web pages
Efficient crawling through URL ordering
Stochastic Models for the Web Graph
The {Web} as a graph: measurements, models and methods
Trawling the {Web} for emerging cyber-communities
Design and Implementation of a High-Performance Distributed Web Crawler
Improved algorithms for topic distillation in a hyperlinked environment
Strong regularities in World Wide Web surfing
Topic-sensitive Pagerank
Sic transit gloria telae: towards an understanding of the web's decay
Adaptive on-line page importance computation
Rank Correlation Methods
Link Analysis, Eigenvectors and Stability
PageRank as a function of the damping factor
The Access Principle : The Case for Open Access to Research and Scholarship (Digital Libraries and Electronic Publishing)
E-Commerce Recommendation Applications
A trust-enhanced recommender system application: Moleskiing
Faculty views on the importance of writing, the nature of academic writing, and teaching and responding to writing in the disciplines
ROC Graphs: Notes and Practical Considerations for Data Mining Researchers
A Bayesian framework for the analysis of microarray expression data: regularized t -test and statistical inferences of gene changes.
Statistical significance for genomewide studies
Multiple sequence alignment using partial order graphs
Automated ortholog inference from phylogenetic trees and  calculation of orthology reliability
Friction : An Enthography of Global Connection
Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER.
On clusterings - good, bad and spectral
Spectral Partitioning Works: Planar Graphs and Finite Element Meshes
Protein function prediction via graph kernels
Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation.
THE ANTHROPOLOGY OF ONLINE COMMUNITIES
The Evolution of Connectivity in Metabolic Networks
Multi-agent planning as a coordination model for self-organized systems
Spikes: Exploring the Neural Code (Computational Neuroscience)
Biophysics of Computation: Information Processing in Single Neurons (Computational Neuroscience)
Data Analysis: A Bayesian Tutorial (Oxford Science Publications)
Multi-stage programming with functors and monads: eliminating abstraction overhead from generic code
Probability Theory: The Logic of Science (Vol 1)
The Evolution of Norms
Probability and Computing : Randomized Algorithms and Probabilistic Analysis
Saccadic eye movements cause compression of time as well as space.
Postsynaptic depolarization requirements for LTP and LTD: a critique of spike timing-dependent plasticity
Metabolic footprinting and systems biology: the medium is the message.
A high-resolution map of active promoters in the human genome
Identification of hundreds of conserved and nonconserved human microRNAs
Fine-scale structural variation of the human genome
An integrative genomics approach to infer causal associations between gene expression and disease.
Synthetic biology.
Irrational Exuberance
Cyberguide: A mobile context-aware tour guide
Decoys for docking.
Trust Propagation in Small Worlds
Interaction Design
Understanding, building and using ontologies
Supporting ontological analysis of taxonomic relationships
An Applicative Control-Flow Graph Based on Huet's Zipper
Brain-computer interfaces for communication and control.
Graph Theory (Graduate Texts in Mathematics)
{P}sychoacoustics. {F}acts and {M}odels
Efficiently computing static single assignment form and the control dependence graph
HyBrow: a prototype system for computer-aided hypothesis evaluation.
Predicting Functional Gene Links from Phylogenetic-Statistical Analyses of Whole Genomes
Convergence of sampling in protein simulations.
Texture Synthesis by Non-parametric Sampling
Image Quilting for Texture Synthesis and Transfer
Efficient Computation of PageRank
Coarse-grained models for proteins
TCP westwood: Bandwidth estimation for enhanced transport over wireless links
Probability Estimates for Multi-class Classification by Pairwise Coupling
Classification by Pairwise Coupling
Reducing Multiclass to Binary: A Unifying Approach for Margin Classifiers
Solving Multiclass Learning Problems via Error-Correcting Output Codes
In Defense of One-Vs-All Classification
On the Algorithmic Implementation of Multiclass Kernel-based Vector Machines
Laplacian Eigenmaps and Spectral Techniques for Embedding and Clustering
A Random Walks View of Spectral Segmentation
On Spectral Clustering: Analysis and an Algorithm
Learning with Local and Global Consistency
The mathematics of learning: dealing with data
Software Factories: Assembling Applications with Patterns, Models, Frameworks, and Tools
An analysis of determinants of amino acids substitution rates in bacterial proteins.
Personal, Portable, Pedestrian : Mobile Phones in Japanese Life
A Bayesian regression approach to the inference of regulatory networks from gene expression data
PeerTrust: supporting reputation-based trust for peer-to-peer electronic communities
Missing value estimation methods for DNA microarrays.
Influential Nodes in a Diffusion Model for Social Networks
Cradle to Cradle: Remaking the Way We Make Things
Multiple sequence alignment with the Clustal series of programs
Evolving Mechanisms of Morphogenesis: on the Interplay between Differential Adhesion and Cell Differentiation
Knowledge in Action. Logical Foundations for Specifying and Implementing Dynamical Systems
The effects of workspace awareness support on the usability of real-time distributed groupware
Moving with the Times: IT Research and the Boundaries of CSCW
Brain-machine interface: Instant neural control of a movement signal
Fine-Grained Dynamic Instrumentation of Commodity Operating System Kernels
The Misalignment of Product Architecture and Organizational Structure in Complex Product Development
Elephants Don't Play Chess
Random walks on graphs: ideas, techniques and results
Mining sequential patterns
Adaptive duplicate detection using learnable string similarity measures
Mining Sequential Patterns: Generalizations and Performance Improvements
Discovery of Frequent Episodes in Event Sequences
Mining frequent patterns without candidate generation
Temporal sequence learning and data reduction for anomaly detection
Studying Recommendation Algorithms by Graph Analysis
{Web Mining for Web Personalization}
How oversight improves member-maintained communities
Contacts and Influence
The quality of health care delivered to adults in the United States.
Blogs and Wikis: Environments for On-line Collaboration
OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes
Effect of sampling on topology predictions of protein-protein interaction networks.
Cell death: critical control points.
The worldwide leaf economics spectrum.
Inference in belief networks: A procedural guide
Applied Cryptography: Protocols, Algorithms, and Source Code in C, Second Edition
The fine-scale structure of recombination rate variation in the human genome.
Memory, History, Forgetting
Complexity Theory for Simpletons
Learning to Segment Speech Using Multiple Cues: A Connectionist Model
Working Knowledge
Absence of Diffusion in Certain Random Lattices
Disordered Electronic Systems
From presentation to interaction: new goals for online learning technologies
Incremental interpretation at verbs: restricting the domain of subsequent reference
Difficulties in simulating the internet
On the self-similar nature of Ethernet traffic (extended version)
Strategies for sound internet measurement
Voices of Collective Remembering
Smoothed particle hydrodynamics
{D}esigning modular artificial neural networks
The Emotional Brain
Investigating Information Systems with Action Research
Dynamic Applications From the Ground Up
Practical Byzantine Fault Tolerance
Semantic Influences On Parsing: Use of Thematic Role Information in Syntactic Ambiguity Resolution
A Gene Network Model for Developing Cell Lineages
Mathematical and computational techniques to deduce complex biochemical reaction mechanisms.
Agents that reduce work and information overload
Text mining: Generating hypotheses from MEDLINE
A Distributed, Developmental Model of Word Recognition and Naming,
The distributed human neural system for face perception
Towards a neural basis of auditory sentence processing
The meaning and use of the area under a receiver operating characteristic (ROC) curve
The neurology of syntax: Language use without Broca's area
Safe Kernel Extensions Without Run-Time Checking
Does IT Matter? Information Technology and the Corrosion of Competitive Advantage
Exploiting space and location as a design framework for interactive mobile systems
Multi-sensor context-awareness in mobile devices and smart artifacts
Activity and location recognition using wearable sensors
Augmenting Museums and Art Galleries
A Survey of Context-Aware Mobile Computing Research
Chemistry of ion coordination and hydration revealed by a K+ channel-Fab complex at 2.0 A resolution.
The Medium is the Massage
Dorsal and ventral streams: a framework for understanding aspects of the functional anatomy of language
Matrix Computations (Johns Hopkins Studies in Mathematical Sciences)(3rd Edition)
Hierarchical model-based motion estimation
trust networks on the semantic web
Recursive make considered harmful
Automatic 3D intersubject registration of MR volumetric data in standardized Talairach space.
A Fast Level Set Method for Propagating Interfaces
Nuclear induction
Geodesic active contours
Variational PDE models in image processing
Mean Shift: A Robust Approach toward Feature Space Analysis
Multiscale vessel enhancement filtering
Edge Detection and Ridge Detection with Automatic Scale Selection
Marching Cubes: A High Resolution 3D Surface Construction Algorithm
Fronts Propagating With Curvature-Dependent Speed - Algorithms Based On {H}amilton-{J}acobi Formulations
Numerical Recipes: The Art of Scientific Computing
Fast marching methods
A fast marching level set method for monotonically advancing fronts
Image processing, analysis, and machine vision
The Protein Data Bank
Foundations of Human Sociality: Economic Experiments and Ethnographic Evidence from Fifteen Small-Scale Societies
Information technology and economic performance: A critical review of the empirical evidence
The Earth Mover's Distance as a Metric for Image Retrieval
Data-driven docking for the study of biomolecular complexes.
The worldwide air transportation network: Anomalous centrality, community structure, and cities' global roles
The Gift: The Form and Reason for Exchange in Archaic Societies
A Historical View of Context
What Can Databases do for Peer-to-Peer?
Student use of electronic information services in further education
The Gene Ontology (GO) database and informatics resource.
The motor theory of speech perception revised
Time, Clocks, and the Ordering of events in a Distributed System
Machine Learning for Sequential Data: A Review
Discriminative Training Methods for Hidden Markov Models: Theory and Experiments with Perceptron Algorithms
An Algorithm that Learns What's in a Name
Gradient-Based Learning Applied to Document Recognition
{The Lorel Query Language for Semistructured Data}
Lottery Scheduling: Flexible Proportional-Share Resource Management
The Design and Implementation of an Operating System to Support Distributed Multimedia Applications
Live Migration of Virtual Machines
We Have Never Been Modern
Innate Immune Recognition
Action Observation and Acquired Motor Skills: An fMRI Study with Expert Dancers
Side-chain flexibility in proteins upon ligand binding.
Causal Protein-Signaling Networks Derived from Multiparameter Single-Cell Data
Modeling of loops in protein structures.
The Computer Music Tutorial
Requirements Engineering: A Good Practice Guide
Why Be Rational?
Modeling the Influence of Thematic Fit (and Other Constraints) in On-line Sentence Comprehension, ,
A Probabilistic Approach to WLAN User Location Estimation
WLAN Location Determination via Clustering and Probability Distributions
Indoor geolocation science and technology
A Survey of Architecture Description Languages
Imagined Communities: Reflections on the Origin and Spread of Nationalism
CSCW at play: <i>'there'</i> as a collaborative virtual environment
Advances in synthetic biology: on the path from prototypes to applications.
The transcriptional landscape of the mammalian genome
Breaking the diffraction resolution limit by stimulated emission: stimulated-emission-depletion fluorescence microscopy
Buffett: : The Making of an American Capitalist
The Internet : An Ethnographic Approach
Perspectives on Free and Open Source Software
TRANSFAC: transcriptional regulation, from patterns to profiles.
Diffusion Kernels on Graphs and Other Discrete Input Spaces
Text categorization by boosting automatically extracted concepts
Swoogle: a search and metadata engine for the semantic web
The Eigentrust algorithm for reputation management in P2P networks
The Coming of Post-Industrial Society: A Venture in Social Forecasting
Incorporating structure to predict microRNA targets.
Generation that exploits corpus-based statistical knowledge
Named entity extraction from speech
Exploiting dictionaries in named entity extraction: Combining semi-markov extraction processes and data integration methods
Phrase Structure in a Computational Model of Child Language Acquisition
PROVAT: a tool for Voronoi tessellation analysis of protein structures and complexes
Computational cluster validation in post-genomic data analysis
Validation and refinement of gene-regulatory pathways on a network of physical interactions.
Working Knowledge: How Organizations Manage What They Know
Negative Refraction Makes a Perfect Lens
Abrupt Climate Change
Midbrain dopamine neurons encode a quantitative reward prediction error signal.
Contextual Design: Defining Customer-Centered Systems (Interactive Technologies)
Designing Visual Interfaces: Communication Oriented Techniques
Designing the User Interface: Strategies for Effective Human-Computer Interaction (4th Edition)
Extreme Programming Explained : Embrace Change (2nd Edition)
PocketLens: Toward a personal recommender system
Generative Communication in {L}inda
Wide-area cooperative storage with {CFS}
FARSITE: Federated, Available, and Reliable Storage for an Incompletely Trusted Environment
Towards a Better Understanding of Context and Context-Awareness
SUPPLE: automatically generating user interfaces
{Classroom 2000}: {An} experiment with the instrumentation of a living educational environment
Discrete Choice with Social Interactions
A Highly Adaptive Distributed Routing Algorithm for Mobile Wireless Networks
{SPINS}: Security Protocols for Sensor Networks
A key-management scheme for distributed sensor networks
Random key predistribution schemes for sensor networks
{LEAP}: efficient security mechanisms for large-scale distributed sensor networks
Secure Routing in Wireless Sensor Networks: Attacks and Countermeasures
Investigating the Energy Consumption of a Wireless Network Interface in an Ad Hoc Networking Environment
Ontology Based Context Modeling and Reasoning using OWL
An ontology for context-aware pervasive computing environments
Ontologies: principles, methods, and applications
Achieving scalability and expressiveness in an Internet-scale event notification service
A low-bandwidth network file system
Pastiche: making backup cheap and easy
Space/time trade-offs in hash coding with allowable errors
Mobile Computing Middleware
The Zebra striped network file system
NFS Version 3 Design and Implementation
The {NFS} Version 4 Protocol
Pervasive Computing: A Paradigm for the 21st Century
The {PARCTAB} Ubiquitous Computing Experiment
{CoOL: A Context Ontology Language to enable Contextual Interoperability}
Application-Level Multicast Using Content-Addressable Networks
{SCRIBE}: A large-scale and decentralized application-level multicast infrastructure
Network Coding for large scale Content Distribution
Squirrel: a decentralized peer-to-peer web cache
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs
The Complete Genome Sequence of Escherichia coli K-12
Whole-genome random sequencing and assembly of Haemophilus influenzae Rd.
Searching for functional sites in protein structures.
Web services in the life sciences.
The Skip Quadtree: A Simple Dynamic Data Structure for Multidimensional Data
Dopamine cells respond to predicted events during classical conditioning: evidence for eligibility traces in the reward-learning network.
Design Rules, Vol. 1: The Power of Modularity
Oversold and Underused: Computers in the Classroom
Toward reference models for requirements traceability
Understanding Media: The Extensions of Man
Speech, Music, Sound
A brief history of neoliberalism
The Digital University: Building a Learning Community
CSCW-Kompendium : Lehr- und Handbuch zum computerunterstÃ¼tzten kooperativen Arbeiten
Pattern formation outside of equilibrium
The New Institutionalism in Organizational Analysis
Origins of fractality in the growth of complex networks
Feral Hypertext: When Hypertext Literature Escapes Control
Bioinformatics: Sequence and Genome Analysis
New directions on agile methods: a comparative analysis
Speech and Language Processing: An Introduction to Natural Language Processing, Computational Linguistics and Speech Recognition (Prentice Hall Series in Artificial Intelligence)
Grounding Spatial Named Entities for Information Extraction and Question Answering
Infants listen for more phonetic detail in speech perception than in word-learning tasks.
Meaning through syntax: language comprehension and the reduced relative clause construction.
The fusiform face area: a module in human extrastriate cortex specialized for face perception.
Visions of rationality
Notions of Computation and Monads
Superparamagnetic clustering of data.
Information technology and organizational learning: a review and assessment of research
Evaluating presence-absence models in ecology: the need to account for prevalence
Predictive habitat distribution models in ecology
Interpreting the Data: Parallel Analysis with Sawzall
Artificial fishes: autonomous locomotion, perception, behavior, and learning in a simulated physical world
Explorations in engagement for humans and robots
Histone Demethylation Mediated by the Nuclear Amine Oxidase Homolog LSD1
On LISP: Advanced Techniques for Common LISP
Structure and Interpretation of Computer Programs
Methodological challenges for understanding cognitive development in infants.
Merging information in speech recognition: feedback is never necessary.
Subcategorical mismatches and the time course of lexical access: Evidence for lexical competition
Volunteering as Red Queen Mechanism for Cooperation in Public Goods Games
The TRACE model of speech perception.
LT codes
Distributed Work
Multiple neural spike train data analysis: state-of-the-art and future challenges
An Introduction to the Conjugate Gradient Method Without the Agonizing Pain
Merging the senses into a robust percept
Lucene in Action (In Action series)
Statistical learning of new visual feature combinations by infants.
Modulation of oscillatory neuronal synchronization by selective visual attention.
Anthropology: Theoretical Practice in Culture and Society
Community Building around Encyclopaedic Knowledge
Long-term monitoring of bacteria undergoing programmed population control in a microchemostat.
Bacterial persistence: a model of survival in changing environments.
Distance metric learning, with application to clustering with side-information
Simulating dynamical features of escape panic
The concept of relevance in IR
IT Governance: How Top Performers Manage IT Decision Rights for Superior Results
Information Quality: Discussions in Wikipedia
What Energy Functions Can Be Minimized via Graph Cuts?
Lazy snapping
Bayesian Indoor Positioning Systems
Impact of Interference on Multi-Hop Wireless Network Performance
Reading population codes: a neural implementation of ideal observers.
Linearity and Normalization in Simple Cells of the Macaque Primary Visual Cortex
Normalization of cell responses in cat striate cortex.
Language and the origin of numerical concepts.
Artificial grammar learning by 1-year-olds leads to specific and abstract knowledge.
Protein function prediction using local 3D templates.
Computing the meanings of words in reading: cooperative division of labor between visual and phonological processes.
The Faculty of Language: What Is It, Who Has It, and How Did It Evolve?
Role-based refactoring of crosscutting concerns
Fast approximate energy minimization via graph cuts
An Experimental Comparison of Min-cut/Max-flow Algorithms for Energy Minimization in Vision
Evaluating computer-supported cooperative work: models and frameworks
Personal Ontologies for Web Navigation
Information Architecture: Blueprints for the Web
Semantic Distance in WordNet: An Experimental, Application-oriented Evaluation of Five Measures
Why there are complementary learning systems in the hippocampus and neocortex: insights from the successes and failures of connectionist models of learning and memory.
A tutorial on Principal Components Analysis
Structure, function, and evolution of transient and obligate proteinÃ¢Â€Â“protein interactions
Monte Carlo Methods
Protein-Protein Docking Benchmark 2.0: an update.
Health Innovation Networks to Help Developing Countries Address Neglected Diseases
Constructivism in computer science education
A Global Geometric Framework for Nonlinear Dimensionality Reduction
"The experienced ""sense"" of a virtual community: characteristics and processes"
Auditory Scene Analysis: The Perceptual Organization of Sound
Optimality and evolutionary tuning of the expression level of a protein
Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells
A hierarchical approach to all-atom protein loop prediction.
Web search for a planet: The Google cluster architecture
Incorporating contextual information in recommender systems using a multidimensional approach
Link analysis ranking: algorithms, theory, and experiments
Patient-Cooperative Strategies for Robot-Aided Treadmill Training: First Experimental Results
Collaborative Information Retrieval Environment: Integration of Information Retrieval with Group Support Systems
From Visual Data Exploration to Visual Data Mining: A Survey
Precise Temporal Modulation in the Response of the SOS DNA Repair Network in Individual Bacteria
Foundations Of Statistical Mechanics
Quantum Theory From Five Reasonable Axioms
Quantum Mechanics as Quantum Information (and only a little more)
Data Mining: Concepts and Techniques (The Morgan Kaufmann Series in Data Management Systems)
Resonance, oscillation and the intrinsic frequency preferences of neurons.
Issues in data stream management
Time course of frequency effects in spoken-word recognition: evidence from eye movements.
Computational cognitive neuroscience of early memory development
Algorithms for Quantum Computation: Discrete Logarithms and Factoring
Can computers be teammates?
Computational prediction of miRNAs in Arabidopsis thaliana
Solving the riddle of the bright mismatches: labeling and effective binding in oligonucleotide arrays.
Exploring Global Motions and Correlations in the Ribosome.
Protein folding and the organization of the protein topology universe.
Genome sequencing in microfabricated high-density picolitre reactors
Increasing Returns and Long-Run Growth
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
Pathways to the analysis of microarray data.
Combined Evidence Annotation of Transposable Elements in Genome Sequences
The semantic learning organization
A vector space model for automatic indexing
Citation Generators: Generating Bibliographies for the Next Generation
What is a Document?
Finding bugs is easy
Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments
Handbook of Action Research : Participative Inquiry and Practice
Intuition and autism: a possible role for Von Economo neurons
Doubts about double dissociations between short- and long-term memory
Consciousness: converging insights from connectionist modeling and neuroscience
The program dependence graph and its use in optimization
Predictive coding in the visual cortex: a functional interpretation of some extra-classical receptive-field effects.
A scalable approach to thread-level speculation
Refactoring to Patterns
Computer-based de novo design of drug-like molecules
Ubiquitin-binding domains
Correlations among amino acid sites in bHLH protein domains: an information theoretic analysis.
A new approach to spike sorting for multi-neuronal activities recorded with a tetrode--how ICA can be practical.
Organization of cell assemblies in the hippocampus
Accuracy of Tetrode Spike Separation as Determined by Simultaneous Intracellular and Extracellular Measurements
Automatic sorting of multiple unit neuronal signals in the presence of anisotropic and non-Gaussian variability.
A poor man's concurrency monad
Self-similarity in World Wide Web traffic: evidence and possible causes
Groupware: some issues and experiences
Do Open-Access Articles Have a Greater Research Impact?
Multimodal Literacy (New Literacies and Digital Epistemologies, V. 4)
Why Video Games are Good for Your Soul
Virtual Environments for Motor Rehabilitation: Review
Escaping free-energy minima
The origin of new genes: glimpses from the young and old
Mammalian microRNAs derived from genomic repeats
A fast quantum mechanical algorithm for database search
A survey of current work in biomedical text mining.
Genetic interactions between polymorphisms that affect gene expression in yeast
A Theory of Fairness, Competition and Cooperation
A rational theory of the size of government
Growth, Income Distribution and Democracy: What the Data Say
The Strategy of Conflict
Inhibitory Postsynaptic Potentials Carry Synchronized Frequency Information in Active Cortical Networks
Molecular dynamics simulations of biomolecules.
Designing Web Usability
PHOAKS: a system for sharing recommendations
Survey of the State of the Art in Human Language Technology
A Semantic Web Primer (Cooperative Information Systems)
What role can adaptive support play in an adaptable system?
Annotation: from paper books to the digital library
Using process diagrams for the graphical representation of biological networks
Probabilistic model of the human protein-protein interaction network
Surviving Sepsis Campaign guidelines for management of severe sepsis and septic shock.
Coupling Between Neuronal Firing, Field Potentials, and fMRI in Human Auditory Cortex
Place Lab: Device Positioning Using Radio Beacons in the Wild
On the properties of small-world network models
ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures.
Network analysis of protein structures identifies functional residues.
Optimality principles in sensorimotor control.
Mapping by admixture linkage disequilibrium: advances, limitations and guidelines
Network-based wireless location: challenges faced in developing techniques for accurate wireless location information
Wavelets in bioinformatics and computational biology: state of art and perspectives
Rewiring of the Yeast Transcriptional Network Through the Evolution of Motif Usage
A Classification and Comparison Framework for Software Architecture Description Languages
Representing Receptor Flexibility in Ligand Docking through Relevant Normal Modes
Automated structure-based prediction of functional sites in proteins: applications to assessing the validity of inheriting protein function from homology in genome annotation and to protein docking.
Using a neural network and spatial clustering to predict the location of active sites in enzymes.
Integration of virtual and high-throughput screening.
A comparison of RDF query languages
Development of the domain name system
The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data
JOY: protein sequence-structure representation and analysis
HOMSTRAD: a database of protein structure alignments for homologous families.
Digital Formations : IT and New Architectures in the Global Realm
Next Century Challenges: Scalable Coordination in Sensor Networks
Service -Oriented Computing: Concepts, Characteristics and Directions
Space and Place: The Perspective of Experience
A Model-Based Approach for Detecting Co-evolving Positions in a Molecule.
The Cartesian Product Algorithm: Simple and Precise Type Inference Of Parametric Polymorphism
KnowledgeTree: a distributed architecture for adaptive e-learning
YeastHub: a semantic web use case for integrating data in the life sciences domain.
Comparative analyses of multi-species sequences from targeted genomic regions
Mining Version Histories to Guide Software Changes
Making Things Public : Atmospheres of Democracy
Power, politics, and MIS implementation
A theoretical extension of the technology acceptance model: Four longitudinal field studies
Amyotrophic Lateral Sclerosis
Random Walks on Complex Networks
Call graph construction in object-oriented languages
Learning and Revising User Profiles: The Identification of Interesting Web Sites
Novelty and redundancy detection in adaptive filtering
"Word Learning in a Domestic Dog: Evidence for ""Fast Mapping"""
MATCH: A tool for searching transcription factor binding sites in DNA sequences.
Personal information management
Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome
Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data
Hitchhiking under positive Darwinian selection
Comparative genomics
The Evolutionary Dynamics Of Eukaryotic Gene Order
Lengths of Chromosomal Segments Conserved since Divergence of Man and Mouse
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
Transcriptional control in the segmentation gene network of Drosophila
The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics
The Semantic Web : A Guide to the Future of XML, Web Services, and Knowledge Management
Spinning the Semantic Web: Bringing the World Wide Web to Its Full Potential
Towards the Semantic Web: Ontology-Driven Knowledge Management
A genomic perspective on protein families.
Forming a story: the health benefits of narrative.
Putting stress into words: health, linguistic, and therapeutic implications.
Link analysis in national {W}eb domains
Geometry and Meaning
Implicit feedback for inferring user preference: a bibliography
Two-dimensional spectral analysis of cortical receptive field profiles
{Statistical and Structural Approaches to Texture}
{Textural Features for Image Classification}
Matching pursuits with time-frequency dictionaries
Probability, Random Variables and Stochastic Processes
Predictive models of molecular machines involved in Caenorhabditis elegans early embryogenesis.
Evolution patterns of open-source software systems and communities
The Many Meanings of Open Source
Seamful interweaving: heterogeneity in the theory and design of interactive systems
Finishing the euchromatic sequence of the human genome.
Measuring Semantic Similarity by Latent Relational Analysis
Biomechanics and Motor Control of Human Movement
A new mathematical model for relative quantification in real-time RT-PCR.
Inventing the {I}nternet
Competition and multiscaling in evolving networks
Evolution of networks
Scale-free topology of e-mail networks
Epidemic threshold in structured scale-free networks
Classification of scale-free networks
Self-similar community structure in organisations
Highly clustered scale-free networks
Delayed {I}nternet routing convergence
Efficient behavior of small-world networks
On the self-similar nature of {E}thernet traffic
The web of human sexual contacts
An Introduction to Econophysics: Correlations and Complexity in Finance
Epidemics and percolation in small-world networks
Epidemic dynamics and endemic states in complex networks
Statistical mechanics
End-to-end routing behavior in the {Internet}
Mapping the gnutella network: Properties of large-scale peer-to-peer systems and implications for system design
Introduction to Percolation Theory
Network Topology Generators: Degree-Based vs. Structural
Growing networks with local rules: preferential attachment, clustering hierarchy and degree correlations
Improving Search in Peer-to-Peer Networks
IMPLICATIONS OF PROTEIN FLEXIBILITY FOR DRUG DISCOVERY
Awareness and coordination in shared workspaces
The AWARE architecture: supporting context-mediated social awareness in mobile cooperation
Predicting the Probability of Change in Object-Oriented Systems
Mapping the backbone of science
Scalable application layer multicast
The Definitive Guide to Plone
Crystallography & NMR system: A new software suite for macromolecular structure determination.
Genome annotation errors in pathway databases due to semantic ambiguity in partial EC numbers
Bursty and hierarchical structure in streams
Evolution in Open Source Software: A Case Study
The diameter of the world wide web
Modeling gene and genome duplications in eukaryotes
Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution.
The structure and early evolution of recently arisen gene duplicates in the Caenorhabditis elegans genome.
Wavelet transforms and the ECG: a review
Preliminary Guidelines for Empirical Research in Software Engineering
Gene-expression profiles to predict distant metastasis of lymph-node-negative primary breast cancer.
Gimme' the context: context-driven automatic semantic annotation with C-PANKOW
Mind Wide Open : Your Brain and the Neuroscience of Everyday Life
Free Energy Calculations: Applications to Chemical and Biochemical Phenomena
Ownership types for safe programming: preventing data races and deadlocks
Automatic acquisition of hyponyms from large text corpora
Agent-based software engineering
The art and design of genetic screens: caenorhabditis elegans.
EMAN: semiautomated software for high-resolution single-particle reconstructions.
Knowledge Representation and Reasoning (The Morgan Kaufmann Series in Artificial Intelligence)
Cognitive theories and the design of e-learning environments.
Condor-G: A Computation Management Agent for Multi-Institutional Grids
Galerkin Projections for Delay Differential Equations
Subgraph centrality in complex networks.
The Structure of Collaborative Tagging Systems
Beyond Fitts' law: models for trajectory-based {HCI} tasks
Environment-specific amino acid substitution tables: tertiary templates and prediction of protein folds.
{Operating System, Concepts}
{LogP: Towards a Realistic Model of Parallel Computation}
Location-Aware Information Delivery with ComMotion
{Eye Movements in Reading and Information Processing: 20 Years of Research}
{Explaining the Enjoyment of Playing Video Games: The Role of Competition}
Fragnostic: walking through protein structure space
Circuit topology and the evolution of robustness in two-gene circadian oscillators.
On the role of space and time in auditory processing.
Rapid task-related plasticity of spectrotemporal receptive fields in primary auditory cortex.
The evolution of human mating:  Trade-offs and strategic pluralism
PubNet: a flexible system for visualizing literature derived networks
Altruistic punishment and the origin of cooperation
Prefrontal cortex and flexible cognitive control: rules without symbols.
Climate change threats to plant diversity in Europe
The application of statistical physics to evolutionary biology
Some simple effective approximations to the 2-Poisson model for probabilistic weighted retrieval
Comparison of routing metrics for static multi-hop wireless networks
A multi-radio unification protocol for IEEE 802.11 wireless networks
An Introduction to Software Architecture
The modular structure of complex systems
Abstractions for Software Architecture and Tools to Support Them
On visual formalisms
Programming-in-the large versus programming-in-the-small
Architecture, design, implementation
Specifying Distributed Software Architectures
Software Architecture: Introducing {IEEE} {Standard} 1471
Procedure Calls Are the Assembly Language of Software Interconnection : Connectors Deserve First-Class Status
Software Architecture: The Next Step
Towards a taxonomy of software connectors
A control-theoretic approach to flow control
Factors affecting the use of a single switch with assistive technology devices.
The tandem affinity purification (TAP) method: a general procedure of protein complex purification.
Global hotspots of species richness are not congruent with endemism or threat
A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules
Comparison of simple potential functions for simulating liquid water
Particle mesh Ewald: An N [center-dot] log(N) method for Ewald sums in large systems
Information Retrieval.
Information Sharing on the Semantic Web
ROCR: visualizing classifier performance in R.
Extraction of transcript diversity from scientific literature.
Functional genomic analysis of the rates of protein evolution
Estimating global impacts from climate change
Robustness, evolvability, and neutrality.
Introduction to Machine Learning (Adaptive Computation and Machine Learning)
A Taxonomy of Workflow Management Systems for Grid Computing
The Commodification of Information (Information Law, 11)
A faster algorithm for betweenness centrality
Attack vulnerability of complex networks.
Computation at the edge of chaos: Phase transitions and emergent computation
Interdisciplinary Collaboration:  An Emerging Cognitive Science
The Complete Atomic Structure of the Large Ribosomal Subunit at 2.4 A Resolution
Crystal structure of the ribosome at 5.5 A resolution.
A general language model for information retrieval
The neurobiology of positive emotions
Soft protein-protein docking in internal coordinates
Efficient exact stochastic simulation of chemical systems with many species and many channels
Don't take my folders away!: organizing personal information to get things done
The Grid. Blueprint for a New Computing Infrastructure.: Blueprint for a New Computing Infrastructure (Elsevier Series in Grid Computing)
The Illusion of Invariant Quantities in Life Histories
Handbook of New Media: Social Shaping and Consequences of Icts
Automatic Filters for the Detection of Coherent Structure in Spatiotemporal Systems
Wiki : Web Collaboration
BiNGO: a Cytoscape plugin to assess overrepresentation of Gene Ontology categories in Biological Networks
BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis.
Alignment of metabolic pathways
Prediction of protein-protein interactions using distant conservation of sequence patterns and structure relationships
The symbol grounding problem
Functional connectivity as revealed by spatial independent component analysis of fMRI measurements during rest.
Genome streamlining in a cosmopolitan oceanic bacterium.
Reconfigurable computing: a survey of systems and software
The Ponder Policy Specification Language
Why Dependent Types Matter
Reconciling Distance Functions and Level Sets
Simultaneous assessment of flow and BOLD signals in resting-state functional connectivity maps.
Designing DCCP: Congestion control without reliability
Density Estimation for Statistics and Data Analysis (Chapman & Hall/CRC Monographs on Statistics & Applied Probability)
The model checker SPIN
Validation and Use of the MM-PBSA Approach for Drug Discovery
Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program.
Conformity to cultural norms of tool use in chimpanzees
Integrated Flood Risk Management in {E}ngland and {W}ales
Clustering of time series dataâ€”a survey
A method for finding communities of related genes
Subnetwork hierarchies of biochemical pathways
Defining and identifying communities in networks
Distinctive Image Features from Scale-Invariant Keypoints
The Design of Browsing and Berrypicking Techniques for the Online Search Interface
The evolution of genetic regulatory systems in bacteria.
Design and diversity in bacterial chemotaxis: a comparative study in Escherichia coli and Bacillus subtilis.
Teaching and learning online with wikis
Information seeking behavior of scientists in the electronic information age: Astronomers, chemists, mathematicians, and physicists
On the impact of alternate path routing for load balancing in mobile ad hoc networks
Phase behaviour of concentrated suspensions of nearly hard colloidal spheres
Online Communities: Design, Theory and Practice
Communities Of Practice, Foucault And Actor-Network Therory
Designing for Virtual Communities in the Service of Learning (Learning in Doing: Social, Cognitive & Computational Perspectives)
Reassembling the Social: An Introduction to Actor-network-theory (Clarendon Lectures in Management Studies)
The click modular router
The categorical abstract machine
The role of the medial frontal cortex in cognitive control.
Information Architecture for the World Wide Web: Designing Large-Scale Web Sites
An Intelligent Computer Assisted Language Learning System for Arabic Learners
Virtual teams: a review of current literature and directions for future research
Context Data in Geo-Referenced Digital Photo Collections
What Makes Human Cognition Unique? From Individual to Shared to Collective Intentionality
Functional MRI: An Introduction to Methods
No simple dependence between protein evolution rate and the number of protein-protein interactions: only the most prolific interactors tend to evolve slowly
Analysis of domain motions by approximate normal mode calculations
Analysis of domain motions in large proteins
Advanced spectral methods for climatic time series
Prolinks: a database of protein functional linkages derived from coevolution.
An Experimental Study of Search in Global Social Networks
Local modeling of global interactome networks.
A fast string searching algorithm
The Structure of Evolutionary Theory
Active design reviews: principles and practices
Improving Machine Learning Approaches to Coreference Resolution
Incorporating Non-local Information into Information Extraction Systems by Gibbs Sampling
Models in information behaviour research
Ontology, Metadata, and Semiotics
Collaborative Ontology Building with Wiki@nt
Shape modeling with front propagation: a level set approach
The evolution of the language faculty: clarifications and implications.
The role of fixational eye movements in visual perception
Receptive fields and functional architecture of monkey striate cortex
Speed of processing in the human visual system
The neural code between neocortical pyramidal neurons depends on neurotransmitter release probability.
Could information theory provide an ecological theory of sensory processing?
An information-maximization approach to blind separation and blind deconvolution
What is the goal of sensory coding
Neural mechanisms of orientation selectivity in the visual cortex
Columnar specificity of intrinsic horizontal and cortico-cortical connections in cat visual cortex
Stimulus-specific neuronal oscillations in orientation columns of cat visual cortex
Oscillatory responses in cat visual cortex exhibit inter-columnar synchronization which reflects global stimulus properties
Sparse coding and decorrelation in primary visual cortex during natural vision
Embodied Conversational Agents
A survey of image registration techniques
Millisecond-timescale, genetically targeted optical control of neural activity
'Breaking' position-invariant object recognition.
Fast and Loose Reasoning Is Morally Correct
Evolution of Genetic Potential
Fedora: An Architecture for Complex Objects and their Relationships
The Clockwork Muse: A Practical Guide to Writing Theses, Dissertations, and Books
Confronting Consumption
A survey of current research on online communities of practice
The Audible Past: Cultural Origins of Sound Reproduction
A Pattern Language: Towns, Buildings, Construction (Center for Environmental Structure Series)
Notes on the Synthesis of Form (Harvard Paperbacks)
GÃ¶del, Escher, Bach: An Eternal Golden Braid
Feature Models, Grammars, and Propositional Formulas
Communities and Technologies
On the unification power of models
Computational models of collective behavior
Performance analysis of the IEEE 802.11 distributed coordination function
Dynamic causal modelling.
Calculating structures and free energies of complex molecules: Combining molecular mechanics and continuum models
The structure of the protein universe and genome evolution.
Control, exploitation and tolerance of intracellular noise.
Ion Channels of Excitable Membranes
Imaging or Imagining? A Neuroethics Challenge Informed by Genetics
Ion-pairs in proteins.
MicroRNAs acting in a double-negative feedback loop to control a neuronal cell fate decision
Formalizing refactorings with graph transformations
Motifs, themes and thematic maps of an integrated Saccharomyces cerevisiae interaction network
Using technology to transform communities of practice into knowledge-building communities
Clustering data streams
The Condition of Postmodernity: An Enquiry into the Origins of Cultural Change
Digital Library Use : Social Practice in Design and Evaluation (Digital Libraries and Electronic Publishing)
Routledge Encyclopedia of Philosophy
Methods to detect selection in populations with applications to the human.
A Delay Tolerant Network Architecture for Challenged Internets
The Evolutionary Fate and Consequences of Duplicate Genes
Bayesian gene/species tree reconciliation and orthology analysis using MCMC
Crystal structure of a mammalian voltage-dependent Shaker family K+ channel.
A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae).
STRING: a database of predicted functional associations between proteins.
Evolutionary cycles of cooperation and defection
Knowing in Practice: Enacting a Collective Capability in Distributed Organizing
How practice matters: a relational view of knowledge sharing
Intragenic tandem repeats generate functional variability.
Drawing graphs nicely using simulated annealing
Combining probability from independent tests: the weighted Z-method is superior to Fisher's approach.
20 Questions on Adaptive Dynamics
Information Retrieval: Data Structures and Algorithms
Conformational Changes Observed in Enzyme Crystal Structures upon Substrate Binding
Protein-protein interactions: hot spots and structurally conserved residues often locate in complemented pockets that pre-organized in the unbound states: implications for docking.
A new, structurally nonredundant, diverse data set of protein-protein interfaces and its implications.
Fundamentals of Speech Recognition
Associated Type Synonyms
Food-web structure and network theory: The role of connectance and size
Fitting population dynamic models to time-series data by gradient matching
BacSim, a simulator for individual-based modelling of bacterial colony growth
Ecosystem size determines food-chain length in lakes
Community structure and metabolism through reconstruction of microbial genomes from the environment
Prokaryotes: The unseen majority
Why Most Published Research Findings Are False
{BoosTexter}: A Boosting-based System for Text Categorization
An empirical study of smoothing techniques for language modeling
A network-based analysis of systemic inflammation in humans
Human subtelomeres are hot spots of interchromosomal recombination and segmental duplication.
A genome-wide comparison of recent chimpanzee and human segmental duplications
Initial sequence of the chimpanzee genome and comparison with the human genome.
Molecular insights into human brain evolution
Introduction to Automata Theory, Languages, and Computation (2nd Edition)
The Educated Mind : How Cognitive Tools Shape Our Understanding
Mobile genetic elements: the agents of open source evolution.
Mechanisms of, and barriers to, horizontal gene transfer between bacteria.
Horizontal gene transfer, genome innovation and evolution.
Automated modelling of signal transduction networks.
Missense meanderings in sequence space: a biophysical view of protein evolution.
Replication and transcription: Shaping the landscape of the genome
Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions.
Coevolution of gene expression among interacting proteins
Unsupervised learning of natural languages
Structural genomics: computational methods for structure analysis.
PROTEIN FAMILIES AND THEIR EVOLUTIONA STRUCTURAL PERSPECTIVE
Emotion and Motivation I: Defensive and Appetitive Reactions in Picture Processing,
The Evolution of Social and Economic Networks
An Experimental Study of the Small World Problem
The human brain is intrinsically organized into dynamic, anticorrelated functional networks.
Social Theory of International Politics
Programmable active memories: reconfigurable systems come of age
An Introduction to Discourse Analysis: Theory and Method
Networks, Dynamics, and the Small-World Phenomenon
Efficient spike-sorting of multi-state neurons using inter-spike intervals information.
Unsupervised spike detection and sorting with wavelets and superparamagnetic clustering
On the variability of manual spike sorting.
Large-scale recording of neuronal ensembles.
Research challenges of autonomic computing
Hydrogen bonding in globular proteins.
A method for spike sorting and detection based on wavelet packets and Shannon's mutual information.
Wavelet-based processing of neuronal spike trains prior to discriminant analysis.
Spike sorting based on discrete wavelet transform coefficients.
Efficient coding of natural sounds.
Using noise signature to optimize spike-sorting and to assess neuronal classification quality.
Improved spike-sorting by modeling firing statistics and burst-dependent spike amplitude attenuation: a Markov chain Monte Carlo approach.
Universal Principles of Design
What Causes a Neuron to Spike?
Efficiency and ambiguity in an adaptive neural code
Biodiversity Datadiversity
How Superorganisms Change: Consensus Formation and the Social Ontology of High-Energy Physics Experiments
Functional parallelism in spoken word-recognition
Tracking the Time Course of Spoken Word Recognition Using Eye Movements: Evidence for Continuous Mapping Models
How to Think Like Leonardo da Vinci: Seven Steps to Genius Every Day
PCA-SIFT: a more distinctive representation for local image descriptors
Metaheuristics in combinatorial optimization: Overview and conceptual comparison
Physics of chemoreception.
SENSE AND THE SINGLE NEURON: Probing the Physiology of Perception
Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements.
Gene finding in novel genomes
Information Flow in Social Groups
Visual receptive field organization
Interaction in 4-second bursts: the fragmented nature of attentional resources in mobile HCI
Who gets to know what when: configuring privacy permissions in an awareness application
The Meaning of Systems Biology
Piggy Bank: Experience the Semantic Web Inside Your Web Browser
Cooperation and competition in pathogenic bacteria
Interface automata
The Theory and Practice of Concurrency
Construction of Abstract State Graphs with {PVS}
Efficient Software-Based Fault Isolation
The neural basis of financial risk taking.
On Certain Formal Properties of Grammars
Scaling step-wise refinement
A pattern approach to interaction design
Managing Variability in Software Architectures
Automated Reasoning on Feature Models
{Variability Issues in Software Product Lines}
Staged Configuration Using Feature Models
Formalizing cardinality-based feature models and their specialization.
{A} comprehensive approach for the development of modular software architecture description languages
Domain--Specific Language Design Requires Feature Descriptions
Integrating Feature Modeling with the {RSEB}
{Feature--Oriented Domain Analysis (FODA) Feasibility Study}
{FORM}: {A} feature--oriented reuse method with domain--specific reference architectures
Programming with Constraints: An Introduction
{COVAMOF: A Framework for Modeling Variability in Software Product Families}
Foundations of Constraint Satisfaction
On the Notion of Variability in Software Product Lines
Rule Learning by Seven-Month-Old Infants
Statistical Learning by 8-Month-Old Infants
Analysis and Visualization of Network Data using JUNG
Ribo-gnome: The Big World of Small RNAs
Satisfying Hydrogen Bonding Potential in Proteins
Understanding code mobility
The Origins of Order: Self-Organization and Selection in Evolution
Obesity alters gut microbial ecology
Systems Biology: Its Practice and Challenges
Systems biology, integrative biology, predictive biology.
Small libraries of protein fragments model native protein structures accurately.
The UCSC Table Browser data retrieval tool
Can language restructure cognition? The case for space
Intensity versus identity coding in an olfactory system.
Functional {D}ata {S}tructures
Long-term meditators self-induce high-amplitude gamma synchrony during mental practice.
Getting to know you: learning new user preferences in recommender systems
SimRank: a measure of structural-context similarity
GroupLens: applying collaborative filtering to Usenet news
Improving recommendation lists through topic diversification
Is seeing believing?: how recommender system interfaces affect users' opinions
An Introduction to Kolmogorov Complexity and Its Applications (Texts in Computer Science)
The Dynamics of Viral Marketing
The Glasgow Haskell compiler: a technical overview
Developing creativity, motivation, and self-actualization with learning systems
Monadic regions
Functional pearl: implicit configurations--or, type classes reflect the values of types
Comparing genomic expression patterns across species identifies shared transcriptional profile in aging
From XML to RDF: how semantic web technologies will change the design of 'omic' standards
Language Trees and Zipping
Asynchronous Exceptions in Haskell
Clearance and Fragmentation of Tropical Deciduous Forest in the Tierras Bajas, Santa Cruz, Bolivia
MetaCyc: a multiorganism database of metabolic pathways and enzymes.
Software for a cascade/parallel formant synthesizer
Gradient effects of within-category phonetic variation on lexical access
Infant sensitivity to distributional information can affect phonetic discrimination
A geometric approach to macromolecule-ligand interactions.
The TAO of Topic Maps
Combinatorial approaches to finding subtle signals in {DNA} sequences.
Probabilistic and Statistical Properties of Words: An Overview
A general method applicable to the search for similarities in the amino acid sequence of two proteins.
A clustering method for repeat analysis in DNA sequences
{PatternHunter: faster and more sensitive homology search}
{Amino acid substitution matrices from protein blocks.}
{A simple method for displaying the hydropathic character of a protein.}
Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes.
{Versatile and open software for comparing large genomes.}
{Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements}
Online Communities: Designing Usability and Supporting Socialbilty
Building Virtual and Augmented Reality museum exhibitions
The Search: How Google and Its Rivals Rewrote the Rules of Business and Transformed Our Culture
An overlap invariant entropy measure of 3D medical image alignment
Dissociated neural representations of intensity and valence in human olfaction
Types, abstraction and parametric polymorphism
How Do Program Understanding Tools Affect How Programmers Understand Programs
Measuring Wikipedia
An evolutionary trace method defines binding surfaces common to protein families.
Trust Management for the Semantic Web
From Einstein's Theorem to Bell's Theorem: A History of Quantum Nonlocality
Attentional modulation of visual processing
Finding the ties that bind: tools in support of a knowledge-building community
Haskell's overlooked object system
The importance of dendritic mitochondria in the morphogenesis and plasticity of spines and synapses.
Good Features to Track
Automatic identification of user goals in Web search
Query Recommendation using Query Logs in Search Engines
BLAT--the BLAST-like alignment tool.
Multitask Learning
An efficient boosting algorithm for combining preferences
Lead discovery using molecular docking.
An integrated theory of the mind.
Reference reconciliation in complex information spaces
Practical routing in delay-tolerant networks
Refactoring bacteriophage T7
New Media, 1740-1915 (Media in Transition)
Microcephalin, a Gene Regulating Brain Size, Continues to Evolve Adaptively in Humans
Ongoing Adaptive Evolution of ASPM, a Brain Size Determinant in Homo sapiens
The protein folding 'speed limit'
Genome trees and the nature of genome evolution.
Correlations Without Synchrony
Named Entity recognition without gazetteers
Wrapper Induction for Information Extraction
Learning Information Extraction Rules for Semi-structured and Free Text
Relational Learning of Pattern-Match Rules for Information Extraction
Absolute comparison of simulated and experimental protein-folding dynamics
Populating a Release History Database from version control and bug tracking systems
DART: directed automated random testing
Molecular diversity and ecology of microbial plankton
Genomic perspectives in microbial oceanography
The top five reasons for lurking: improving community experiences for everyone
Online communities: a longitudinal analysis of communication activities
De-Lurking in Virtual Communities: A Social Communication Network Approach to Measuring the Effects of Social and Cultural Capital
Information sharing online: a research challenge
Lurker demographics: counting the silent
Stimulating social engagement in a community network
A multilevel analysis of sociability, usability, and community dynamics in an online health community
Accurate Multiplex Polony Sequencing of an Evolved Bacterial Genome
The COG database: an updated version includes eukaryotes
Thresholding of statistical maps in functional neuroimaging using the false discovery rate.
Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins.
Posets and planar graphs
Cloning-based context-sensitive pointer alias analysis using binary decision diagrams
Optimal search strategies for retrieving scientifically strong studies of treatment from Medline: analytical survey
What kind of evidence is it that Evidence-Based Medicine advocates want health care providers and consumers to pay attention to?
Automated use of a Wiki for collaborative lecture notes
Social navigation research agenda
Tropical Deforestation and the Kyoto Protocol
The cougar approach to in-network query processing in sensor networks
Query Processing in Sensor Networks
Academic Institutional Repositories: Deployment Status in 13 Nations as of Mid 2005
A simple approach for protein name identification: prospects and limits.
Limitations and potentials of current motif discovery algorithms
An Examination of Citation Counts in a New Scholarly Communication Environment
Toward high-resolution de novo structure prediction for small proteins.
Why distance matters: effects on cooperation, persuasion and deception
Location-Aware Computing Comes of Age
Reconstruction and Validation of Saccharomyces cerevisiae iND750, a Fully Compartmentalized Genome-Scale Metabolic Model
How Buildings Learn: What Happens After They're Built
An algorithm for subgraph isomorphism
Linear scan register allocation
Software pipelining: an effective scheduling technique for {VLIW} machines
Text-mining approaches in molecular biology and biomedicine
Regulation by let-7 and lin-4 miRNAs results in target mRNA degradation.
Toward a mechanistic psychology of dialogue
Fundamentals of cDNA microarray data analysis.
Bootstrapping cluster analysis: Assessing the reliability of conclusions from microarray experiments
The geoarchaeology of the prehistoric ditched sites of the upper Mae Nam Mun Valley, NE Thailand, III: Late Holocene vegetation history
A combined pollen and phytolith record for fourteen thousand years of vegetation change in northeastern Thailand
A 40,000 year palynological record from north-east Thailand; implications for biogeography and palaeo-environmental reconstruction
The Elements of User Experience: User-Centered Design for the Web
Regulated cell-to-cell variation in a cell-fate decision system
Human-Computer Interaction (3rd Edition)
Entangled networks, synchronization and optimal network topology
Distributed, real-time computation of community preferences
Geometry of cuts and metrics
Working Effectively with Legacy Code
An MDP-Based Recommender System
Nonlinear elasticity, proteinquakes, and the energy landscapes of functional transitions in proteins.
Protein kinase inhibitors: insights into drug design from structure.
Using the Experience Sampling Method to Evaluate Ubicomp Applications
Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data.
A comparison study: applying segmentation to array CGH data for downstream analyses.
{A physical basis for protein secondary structure}
Development and Testing of the OPLS All-Atom Force Field on Conformational Energetics and Properties of Organic Liquids
Evolution strategies - A comprehensive introduction
Role of Delays in Shaping Spatiotemporal Dynamics of Neuronal Activity in Large Networks
Proposed NIST Standard for Role-Based Access Control
Lattice Boltzmann method for fluid flows
Killing Monsters Why Children Need Fantasy, Super Heroes, and Make-Believe Violence
Distribution and intensity of constraint in mammalian genomic sequence
Measurements of a distributed file system
Empirical Findings in Agile Methods
Effects of four computer-mediated communications channels on trust development
Coordination of communication: effects of shared visual context on collaborative work
3D TV: a scalable system for real-time acquisition, transmission, and autostereoscopic display of dynamic scenes
Network structure in virtual organizations
Cost Models for Future Software Life Cycle Processes: COCOMO 2.0
Organizational learning and communities-of-practice: Toward a unified view of working, learning, and innovation
Community effort in online groups: Who does the work and why?
Extracting team mental models through textual analysis
Defining Open Source Software project success
Effective work practices for FLOSS development: A model and propositions
Hierarchy and Centralization in Free and Open Source Software team communications
The social structure of free and open source software development
The social structure of Open Source Software development teams
Detection of Logical Coupling Based on Product Release History
Prospering in dynamically-competitive environments: Organizational capability as knowledge integration
Toward a knowledge-based theory of the firm
Motivation of Software Developers in Open Source Projects: An Internet-based Survey of Contributors to the Linux Kernel
"Open Source Software and the ""Private-Collective"" Innovation Model: Issues for Organization Science"
The perils and pitfalls of mining SourceForge
Organizational learning: The contributing processes and the literatures
Communication and trust in global virtual teams
An Empirical Approach to Studying Software Evolution
Effort, co-operation and co-ordination in an open source software project: GNOME
Cave or Community? An Empirical Examination of 100 Mature Open Source Projects
Community, Joining, and Specialization in Open Source Software Innovation: A Case Study
A case study of Open Source Software development: The Apache server
Using technology and constituting structures: A practice lens for studying technology in organizations
The duality of technology: Rethinking the concept of technology in organizations
Homesteading the noosphere
The cathedral and the bazaar
Understanding the requirements for developing Open Source Software systems
Collaboration with lean media: How open-source software succeeds
Essence of Distributed Work: The Case of the Linux Kernel
{GPSR: greedy perimeter stateless routing for wireless networks}
Simulation, verification and automated composition of web services
The Description Logic Handbook: Theory, Implementation, and Applications
Description logic programs: combining logic programs with description logic
{OWL Web Ontology Language Reference}
SWRL: A Semantic Web Rule Language Combining OWL and RuleML
The Psychology of Attention
An Affine Invariant Salient Region Detector
Selective Visual Attention Enables Learning and Recognition of Multiple Objects in Cluttered Scenes
Statistical signals in bioinformatics.
Discovering models of software processes from event-based data
SkipNet: A Scalable Overlay Network with Practical Locality Properties
Search and Replication in Unstructured Peer-to-Peer networks
Random Walks in Peer-to-Peer Networks
Making gnutella-like P2P systems scalable
Optimal Network Topologies for Local Search with Congestion
Anthill: A Framework for the Development of Agent-Based Peer-to-Peer Systems
Generalized Principal Component Analysis (GPCA)
Resolving abbreviations to their senses in Medline.
Accuracy of Metrics for Inferring Trust and Reputation in Semantic Web-Based Social Networks
Encouraging contributions in learning networks using incentive mechanisms
Toward the semantic geospatial web
Natural-like function in artificial WW domains
Evolutionary information for specifying a protein fold
A bit more to it: scholarly communication forums as socio-technical interaction networks
The essence of dataflow programming
Are innate immune signaling pathways in plants and animals conserved?
Mean-shift blob tracking through scale space
Clustering Aggregation
Face Recognition Using Laplacianfaces
Wallflower: Principles and practice of background maintenance
Adaptive background mixture models for real-time tracking
Non-parametric model for background subtraction
The missing link - a probabilistic model of document content and hypertext connectivity
Is imitation learning the route to humanoid robots?
An Overview of Ensembl
Group awareness in distributed software development
THESPIAN: An Architecture for Interactive Pedagogical Drama
A Program for Aligning Sentences in Bilingual Corpora
Stochastic Gene Expression in Fluctuating Environments
An Operator Interaction Framework for Visualization Systems
{Contexts for the Semantic Web}
{Bipartite Graphs as Intermediate Model for RDF}
{Similarity Flooding: A Versatile Graph Matching Algorithm and its Application to Schema Matching}
{Algorithmics and Applications of Tree and Graph Searching}
Peer-to-peer information retrieval using self-organizing semantic overlay networks
{Efficient {RDF} Storage and Retrieval in Jena2}
{A (Sub)Graph Isomorphism Algorithm for Matching Large Graphs}
{Semantic Annotation, Indexing, and Retrieval}
The state of the art in distributed query processing
{SPARQL Query Language for {RDF}}
{Ontologies and semantics for seamless connectivity}
MASON: A Multiagent Simulation Environment
Architecture and algorithms for an IEEE 802.11-based multi-channel wireless mesh network
A mechanism for cognitive dynamics: neuronal communication through neuronal coherence
Noise in Gene Expression: Origins, Consequences, and Control
The past and future of the past tense
Phenotypic diversity, population growth, and information in fluctuating environments.
On Spectral Graph Drawing
Centralized channel assignment and routing algorithms for multi-channel wireless mesh networks
Recognizing action at a distance
The Visual Analysis of Human Movement: A Survey
The recognition of human movement using temporal templates
Relevance: The Whole History
Local complexity of amino acid interactions in a protein core.
Matrix Analysis and Applied Linear Algebra
ArrayProspector: a web resource of functional associations inferred from microarray expression data.
Function prediction and protein networks.
Can Quantum-Mechanical Description of Physical Reality Be Considered Complete?
A role-based access control model and reference implementation within a corporate intranet
Evolutionarily Conserved Pathways of Energetic Connectivity in Protein Families
Progressive sequence alignment as a prerequisite to correct phylogenetic trees.
The KEGG resource for deciphering the genome.
{ChIP-chip: considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments}
{The use of gene clusters to infer functional coupling}
{Protein interaction maps for complete genomes based on gene fusion events}
{Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites}
{Similarity of phylogenetic trees as indicator of protein-protein interaction}
{Assessing the limits of genomic data integration for predicting protein networks}
{Gene ontology: tool for the unification of biology. The Gene Ontology Consortium}
{The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology}
Tracking Information Epidemics in Blogspace
A comparative study of machine-learning methods to predict the effects of single nucleotide polymorphisms on protein function
A computational model and classification framework for social navigation
Genre, task, topic and time: facets of personal digital document management
Comparing community structure identification
Astrolabe: A robust and scalable technology for distributed system monitoring, management, and data mining
Bimodal multicast
Cross-Layering in Mobile Ad Hoc Network Design
Core: a collaborative reputation mechanism to enforce node cooperation in mobile ad hoc networks
Resource Description Framework ({RDF}): Concepts and Abstract Syntax
The Algorithm Design Manual
A Methodology for Implementing Highly Concurrent Data Objects
An analysis of protein domain linkers: their classification and role in protein folding
The Blank Slate : The Modern Denial of Human Nature
PRECISE: Software for Prediction of cis-Acting Regulatory Elements
Simpleaffy: a BioConductor package for Affymetrix Quality Control and data analysis
TileMap: create chromosomal map of tiling array hybridizations.
MicroRNA identification based on sequence and structure alignment
Spontaneous evolution of modularity and network motifs
A machine learning approach to coreference resolution of noun phrases
Link Mining: A New Data Mining Challenge
Model-based adaptation for self-healing systems
Towards architecture-based self-healing systems
Perl Best Practices
Influence of conservation on calculations of amino acid covariance in multiple sequence alignments
On Evolutionary Conservation of Thermodynamic Coupling in Proteins
Learning to order things
Norm formation in social influence networks
Small-world view of the amino acids that play a key role in protein folding.
Computational Improvements Reveal Great Bacterial Diversity and High Metal Toxicity in Soil
Narratives at work: story telling as cooperative diagnostic activity
The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective.
Lessons in Molecular Recognition: The Effects of Ligand and Protein Flexibility on Molecular Docking Accuracy
Steered molecular dynamics and mechanical functions of proteins
Universally conserved positions in protein folds: reading evolutionary signals about stability, folding kinetics and function.
From Finite Sets to Feynman Diagrams
Dynamic optimization for functional reactive programming using generalized algebraic data types
A principled approach to operating system construction in Haskell
Scrap your nameplate: (functional pearl)
Backtracking, interleaving, and terminating monad transformers: (functional pearl)
Scrap your boilerplate with class: extensible generic functions
Quantum Gravity as a Dissipative Deterministic System
Quantum-Enhanced Measurements: Beating the Standard Quantum Limit
Resilient Overlay Networks
Computational Geometry: Algorithms and Applications
EasyLiving: Technologies for Intelligent Environments
Informed Content Delivery Across Adaptive Overlay Networks
Dynamic tuning of the IEEE 802.11 protocol to achieve a theoretical throughput limit
Towards a Common API for Structured Peer-to-Peer Overlays
Multicast Routing in Datagram Internetworks and Extended LANs
The Capacity of Wireless Networks
Overcast: Reliable Multicasting with an Overlay Network
Reducibility among Combinatorial Problems
Charging and Rate Control for Elastic Traffic
Bullet: High Bandwidth Data Dissemination Using an Overlay Mesh
Agile Application-Aware Adaptation for Mobility
Service Capacity of Peer to Peer Networks
Towards a proteome-scale map of the human protein-protein interaction network.
Interfaces and the driving force of hydrophobic assembly
Recent advances in the development and application of implicit solvent models in biomolecule simulations
What's Real About Virtual Reality?
Dealing with mobility: understanding access anytime, anywhere
Apprenticeship in Thinking: Cognitive Development in Social Context
Designing Information Spaces: The Social Navigation Approach
An artificial intelligence perspective on autonomic computing policies
Statistics of citation networks
Analyzing protein function on a genomic scale: the importance of gold-standard positives and negatives for network prediction
Information assessment on predicting protein-protein interactions.
Incremental Online Learning in High Dimensions
Creating Semantic Web contents with Protege-2000
Speciation along environmental gradients
The synthetic genetic interaction spectrum of essential genes
Nonlinear dynamical analysis of EEG and MEG: review of an emerging field.
Prefrontal phase locking to hippocampal theta oscillations.
Decentralised Autonomic Computing: Analysing Self-Organising Emergent Behaviour using Advanced Numerical Methods
Neurophysiological investigation of the basis of the fMRI signal
Utility functions in autonomic systems
From Gutenberg to the Global Information Infrastructure : Access to Information in the Networked World
TREC: Experiment and Evaluation in Information Retrieval
Design and Evaluation of an Autonomic Workflow Engine
An architectural approach to autonomic computing
Autonomic computing: emerging trends and open problems
Achieving extensibility through product-lines and domain-specific languages: a case study
Actions Sketch: A Novel Action Representation
Histograms of Oriented Gradients for Human Detection
Online tools to support literature-based discovery in the life sciences
Information retrieval and knowledge discovery utilising a biomedical Semantic Web
Hairpins in bookstacks: Information retrieval from biomedical text
Prediction of protein conformational freedom from distance constraints
Mining the Space of Graph Properties
Blocking Blog Spam with Language Model Disagreement
{CHARMM} --- a Program for Macromolecular Energy, Minimization, and Dynamics Calculations
Handbook of {G}enetic {A}lgorithms
Drug discovery: A historical perspective
{DOCK} 4.0: Search strategies for automated molecular docking of flexible molecule databases
Molecular complexity and its impact on the probability of finding leads for drug discovery
Is there a difference between leads and drugs? {A} historical perspective
A shape-based {3-D} scaffold hopping method and its application to a bacterial protein-protein interaction
SWISS-MODEL: an automated protein homology-modeling server
The Gender Similarities Hypothesis
Emotion and consciousness: Ends of a continuum
Ontology Learning from Text: Methods, Evaluation and Applications
Collaborative and Usage-driven Evolution of Personal Ontologies
Wikipedia and the Semantic Web &#8211; The Missing Links
Learning by Googling
Learning Concept Hierarchies from Text Corpora using Formal Concept Analysis
Access Interfaces for Open Archival Information Systems based on the OAI-PMH and the OpenURL Framework for Context-Sensitive Services
Ligand binding affinities from MD simulations.
Reconfigurable computing: architectures and design methods
The dawning of the autonomic computing era
On the origin of species by sympatric speciation.
Nonrigid registration using free-form deformations: application to breast MR images
On combining classifiers
Detecting Irregularities in Images and in Video
Process migration
BIND: the Biomolecular Interaction Network Database.
DrugScore(CSD)-knowledge-based scoring function derived from small molecule crystal data with superior recognition rate of near-native ligand poses and better affinity prediction.
A Simulated Study of Implicit Feedback Models
The Sprite Network Operating System
A block-sorting lossless data compression algorithm.
Fast Folding and Comparison of RNA Secondary Structures
PageRank, {HITS} and a Unified Framework for Link Analysis
The {I}ntelligent {S}urfer: {P}robabilistic {C}ombination of {L}ink and {C}ontent {I}nformation in {P}age{R}ank
SALSA: the stochastic approach for link-structure analysis
A surprising simplicity to protein folding
Formal Semantics and Verification for Feature Modeling
Mistaken identifiers: gene name errors can be introduced inadvertently when using Excel in bioinformatics.
Zen and the art of medical image registration: correspondence, homology, and quality.
Active Contours Without Edges
Partial Differential Equations
Practical optimization
Level Set Methods and Dynamic Implicit Surfaces
Processing and visualization for diffusion tensor MRI
Coarse-grained normal mode analysis in structural biology.
Architecture and evaluation of an unplanned 802.11b mesh network
The genetics of geometry.
Improved side-chain modeling for protein-protein docking.
What makes us tick? Functional and neural mechanisms of interval timing.
Molecular dynamics simulations
Verification and validation of simulation models
Dynamical approaches to cognitive science
Contextual cueing of visual attention
A survey of controlled experiments in software engineering
Implicit learning: news from the front
An alternative view of the mental lexicon
Eye movements in natural behavior.
Human gaze control during real-world scene perception
Applying `design by contract'
A system for automatic personalized tracking of scientific literature on the Web
Eigentaste: A Constant Time Collaborative Filtering Algorithm
The Role of Occam's Razor in Knowledge Discovery
Knowledge Discovery in Databases -- an Overview
Combining Collaborative Filtering with Personal Agents for better Recommendations
Effective personalization based on association rule discovery from web usage data
Overfitting Avoidance as Bias
Enhancing digital libraries with {TechLens+}
Clustering Methods For Collaborative Filtering
Stacked generalization
The Grid: Blueprint for a New Computing Infrastructure
Requirements for Digital Preservation Systems: A Bottom-Up Approach
Data Mining: Practical Machine Learning Tools and Techniques
Breakdown of Cortical Effective Connectivity During Sleep
Homeostatic plasticity in the developing nervous system
Generalized dead-end elimination algorithms make large-scale protein side-chain structure prediction tractable: implications for protein design and structural genomics.
Why highly expressed proteins evolve slowly
Correlated neuronal activity and the flow of neural information
Neuronal oscillations in cortical networks.
Implementing Lazy Functional Languages on Stock Hardware: The Spineless Tagless G-Machine
Who is the best connected scientist? A study of scientific coauthorship networks
Mining the network value of customers
Bayesian statistical analysis of protein side-chain rotamer preferences.
Backbone-dependent rotamer library for proteins. Application to side-chain prediction.
Parameter Control in {E}volutionary {A}lgorithms
Designing mediation for context-aware applications
Change blindness: past, present, and future.
Ekta: an efficient DHT substrate for distributed applications in mobile ad hoc networks
Derivatives of Regular Expressions
Kindergarten Quantum Mechanics
A categorical semantics of quantum protocols
Exploratory Sequential Data Analysis: Foundations
Evolution of indirect reciprocity by image scoring
Topological Fisheye Views for Visualizing Large Graphs
A human protein-protein interaction network: a resource for annotating the proteome.
The Inmates Are Running the Asylum
Recursion schemes from comonads
A framework analysis of the open source software development paradigm
Perhaps correlational but not causal: No effect of dyslexic readers' magnocellular system on their eye movements during reading
A tutorial on the universality and expressiveness of fold
Haskell on a shared-memory multiprocessor
There and back again: arrows for invertible programming
Motor learning elicited by voluntary drive
A systems biology perspective on protein structural dynamics and signal transduction.
Intelligent Data Analysis
Allosteric determinants in guanine nucleotide-binding proteins.
Phylogeny Estimation and Hypothesis Testing Using Maximum Likelihood
Motor rehabilitation using virtual reality.
Mining knowledge from text using information extraction
Personal knowledge publishing: fostering interdisciplinary communication
Discovery of regulatory elements in vertebrates through comparative genomics
Making sense of sensing systems: five questions for designers and researchers
R-trees: a dynamic index structure for spatial searching
The R -Tree: A Dynamic Index for Multi-Dimensional Objects
The R*-tree: an efficient and robust access method for points and rectangles
Data structures and algorithms for nearest neighbor search in general metric spaces
Why Open Source software can succeed
Gift economies in the development of open source software: anthropological reflections
Altruistic individuals, selfish firms? The structure of motivation in Open Source software
The X-Tree: An Index Structure for High-Dimensional Data
M-tree: An Efficient Access Method for Similarity Search in Metric Spaces
Keyword Searching and Browsing in databases using BANKS
Bidirectional expansion for keyword search on graph databases
Optimal aggregation algorithms for middleware
Discovering large dense subgraphs in massive graphs
Rank Aggregation Methods for the Web
Extended Static Checking for {J}ava
An Overview of {JML} Tools and Applications
Preliminary Design of {JML}: A Behavioral Interface Specification Language for {Java}
A Categorical Manifesto
Conceptual Mathematics: A First Introduction To Categories
Cooperative Multi-Agent Learning: The State of the Art
The Epitheliome: Agent-Based Modelling Of The Social Behaviour Of Cells
Tensegrity {I}. Cell structure and hierarchical systems biology
The challenges of in silico biology
Cell division
Computing with membranes
Modeling the heart-from genes to cells to the whole organ
Developing multiagent systems: The Gaia methodology
E-{CELL}: software environment for whole-cell simulation
Toward large-scale modeling of the microbial cell for computer simulation
{GEPASI}: A software package for modelling the dynamics, steady states and control of biochemical and other systems
Cell{ML}: its future, present and past
{COMPUCELL}, a multi-model framework for simulation of morphogenesis
Simulated Diffusion of Phosphorylated {C}he{Y} through the Cytoplasm of {E}scherichia coli
Building {B}rains for {B}odies
Being there : {P}utting {B}rain, {B}ody, and {W}orld {T}ogether {A}gain
The {E}xtended {M}ind
Looking for {S}pinoza : {J}oy, {S}orrow, and the {F}eeling {B}rain
Descartes' {E}rror : {E}motion, {R}eason, and the {H}uman {B}rain
The mind's I : fantasies and reflections on self and soul
Being and time
Computational approaches to motor learning by imitation
Rationality in action
The embodied mind : cognitive science and human experience
Six views of embodied cognition
Scalable collaborative filtering using cluster-based smoothing
Latent semantic models for collaborative filtering
{SOUPA: Standard Ontology for Ubiquitous and Pervasive Applications}
{Developing a Context-Aware Electronic Tourist Guide: Some Issues and Experiences}
{Project Aura: Toward Distraction-Free Pervasive Computing}
{Modeling Context Information in Pervasive Computing Systems}
{Privacy by Design -- Principles of Privacy-Aware Ubiquitous Systems}
{Context-Aware Computing Applications}
{Disseminating Active Map Information to Mobile Hosts}
{Aura: an Architectural Framework for User Mobility in Ubiquitous Computing Environments}
Topic and role discovery in social networks
Neural Network-Based Face Detection
Particle Filters for Location Estimation in Ubiquitous Computing: A Case Study
An Analysis of the Requirements Traceability Problem
Amorphous Program Slicing
Interprocedural Slicing Using Dependence Graphs
Structured Programming
Object-Oriented Design Heuristics
Concern Graphs: Finding and Describing Concerns Using Structural Program Dependencies
Theories, Methods and Tools in Program Comprehension: Past, Present and Future
A Survey of Program Slicing Techniques
CiteSeer: An Autonomous Web Agent for Automatic Retrieval and Identification of Interesting Publications
CiteSeer: An Automatic Citation Indexing System
An Integrated Experimental Environment for Distributed Systems and Networks
Cortical Sensitivity to Visual Features in Natural Scenes
Dynamic properties of network motifs contribute to biological network organization.
Local regulatory variation in Saccharomyces cerevisiae.
ALMI: An Application Level Multicast Infrastructure
Visual attention: the where, what, how and why of saliency.
Bayeux: An Architecture for Scalable and Fault-tolerant Wide-area Data Dissemination
A Practical part-of-speech tagger
A Maximum Entropy Model for Part-of-Speech Tagging
Comparative Protein Modelling by Satisfaction of Spatial Restraints
The loss function of sensorimotor learning.
Probabilistic Models in Information Retrieval
Communities of Practice: Learning, Meaning, and Identity
Debugging Operating Systems with Time-Traveling Virtual Machines
A comparison of RNA folding measures
Statistical Issues in the Analysis of Neuronal Data
The power of collective intelligence
Distinguishing structural and functional restraints in evolution in order to identify interaction sites.
The NLM Indexing Initiative
Molecular Phylogeny and Divergence Times of Deuterostome Animals
Changes in alternative splicing of human and mouse genes are accompanied by faster evolution of constitutive exons.
The architecture of complex weighted networks
The social shaping of technology
Condensation -- conditional density propagation for visual tracking
A Tutorial on Particle Filters for On-line Non-linear/Non-Gaussian Bayesian Tracking
Kernel-based object tracking
On Sequential Monte Carlo Sampling Methods for Bayesian Filtering
An Introduction to the Kalman Filter
Sequential Monte Carlo methods in practice
Transitive functional annotation by shortest-path analysis of gene expression data
The Distribution of Fitness Effects Among Beneficial Mutations
Community Building on the Web : Secret Strategies for Successful Online Communities
How People Learn: Brain, Mind, Experience, and School
Electrostatics and diffusion of molecules in solution: simulations with the University of Houston Brownian Dynamics program
A Calculus for Cryptographic Protocols: The Spi Calculus
Simulation-based comparisons of Tahoe, Reno and SACK TCP
The Geometry of Graphs and some of its Algorithmic Applications
Emergence of Young Human Genes after a Burst of Retroposition in Primates.
Graphs over Time: Densification Laws, Shrinking Diameters and Possible Explanations
Boundary-Work and the Demarcation of Science from Non-Science: Strains and Interests in Professional Ideologies of Scientists
Misunderstood misunderstanding: social identities and public uptake of science
Here and Everywhere: Sociology of Scientific Knowledge
Will a Biological Database Be Different from a Biological Journal?
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood.
Protein Molecular Function Prediction by Bayesian Phylogenomics
A Framework for Collaborative, Content-Based and Demographic Filtering
Separating the swarm: categorization methods for user sessions on the web
The structure of broad topics on the Web
Semantic Overlay Networks for P2P Systems
A Web odyssey: from codd to XML
A formal model for an expressive fragment of XSLT
Knowledge Management in Theory and Practice
Knowledge Management Systems: Information and Communication Technologies for Knowledge Management
Perceived Self-Efficacy in Cognitive Development and Functioning
Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: Implications for the microbial pan-genome
The functional genomics of noncoding RNA.
Top 10 Unsolved Information Visualization Problems
Remote Sensing and Image Interpretation
Accurately Interpreting Clickthrough Data as Implicit Feedback
Matrices, Vector Spaces, and Information Retrieval
Illumination for computer generated pictures
The Cosmological Constant
Cooperative Coevolution: An Architecture for Evolving Coadapted Subcomponents
Protein structure alignment by incremental combinatorial extension (CE) of the optimal path.
Testing for phylogenetic signal in comparative data: behavioral traits are more labile.
Dopamine, learning and motivation
Improved Approximation Algorithms for Maximum Cut and Satisfiability Problems Using Semidefinite Programming
Costly Signaling and Cooperation
Primary Visual Cortex and Visual Awareness
Delivering real-world ubiquitous location systems
User needs for location-aware mobile services
Effects of Computerized Clinical Decision Support Systems on Practitioner Performance and Patient Outcomes: A Systematic Review
Effects of computer-based clinical decision support systems on physician performance and patient outcomes: a systematic review.
Ontological analysis of gene expression data: current tools, limitations, and open problems
Interactions between frontal cortex and basal ganglia in working memory: A computational model
Ten thousand interactions for the molecular biologist
Bioinformatics for whole-genome shotgun sequencing of microbial communities.
The mechanics of trust: a framework for research and design
A validation of object-oriented design metrics as quality indicators
MULTIPROSPECTOR: an algorithm for the prediction of protein-protein interactions by multimeric threading.
Gene expression and molecular evolution.
Improving loss resilience with multi-radio diversity in wireless networks
Why Don't Physicians Follow Clinical Practice Guidelines?: A Framework for Improvement
Understanding Metadata
Formal methods: state of the art and future directions
The Quickhull Algorithm for Convex Hulls
An expressive language of signatures
The HP AutoRAID Hierarchical Storage System
Process mining: a research agenda
Workflow Mining: Discovering Process Models from Event Logs
Core transcriptional regulatory circuitry in human embryonic stem cells.
Semidefinite Programming
Why Aren't Operating Systems Getting Faster As Fast as Hardware?
Diversity of protein-protein interactions.
ProMiner: rule-based protein and gene entity recognition
Expert knowledge without the expert: integrated analysis of gene expression and literature to derive active functional contexts.
A case for interaction: a study of interactive information retrieval behavior and effectiveness
Beta oscillations in a large-scale sensorimotor cortical network: Directional influences revealed by Granger causality
Active + Semi-supervised Learning = Robust Multi-View Learning
HL7 Clinical Document Architecture, Release 2
Semantic file systems
Experiences with the Amoeba distributed operating system
Optimal experimental design for event-related fMRI.
Research Design: Qualitative, Quantitative, and Mixed Methods Approaches
Social Network Analysis : Methods and Applications (Structural Analysis in the Social Sciences)
Independent Factor Analysis
Naive (Bayes) at forty: The independence assumption in information retrieval.
Cones of Matrices and Set-Functions and 0â€“1 Optimization
Self-management in chaotic wireless deployments
Singular Value Decomposition and Principal Component Analysis
Spectral Graph Theory (CBMS Regional Conference Series in Mathematics, No. 92)
Fundamentals of Statistical Signal Processing, Volume I: Estimation Theory  (v. 1)
Computer Vision: A Modern Approach
An Invitation to 3-D Vision
Genomic analysis of uncultured marine viral communities.
Improvement in protein functional site prediction by distinguishing structural and functional constraints on protein family evolution using computational design.
Emergence versus self-organisation: different concepts but promising when combined
A survey on sensor networks
Conservation and evolvability in regulatory networks: The evolution of ribosomal regulation in yeast
Expression divergence between duplicate genes.
Sensor networks: Evolution, opportunities, and challenges
Numerical Analysis
Computational Methods for Fluid Dynamics
Computational Fluid Dynamics
Prediction of protein-protein interactions by docking methods.
Telling humans and computers apart automatically
The earth is round (pâ€‚<â€‚.05)
Stochastic models of neuronal dynamics.
GPFS: A Shared-Disk File System for Large Computing Clusters
Characterization of complex networks: A survey of measurements
Statistical analysis and prediction of protein-protein interfaces
Robustness and Evolvability in Living Systems (Princeton Studies in Complexity)
Evolving responsively: adaptive mutation.
The Production of Space
The Right to the City: Social Justice and the Fight for Public Space
An overview of statistical learning theory
CYC: a large-scale investment in knowledge infrastructure
Neural networks and perceptual learning
Generalization in vision and motor control
Computational roles for dopamine in behavioural control
Cortical rewiring and information storage
Plasticity in single neuron and circuit computations.
Synaptic computation.
Eusociality: Origin and consequences
Socialization in an Open Source Software Community: A Socio-Technical Analysis
Measuring the extent and effectiveness of protected areas as an indicator for meeting global biodiversity targets
Statistical pattern recognition
Revisiting the visit:: understanding how technology can shape the museum visit
Interrogating protein interaction networks through structural biology
A re-examination of text categorization methods
A Comparative Study on Feature Selection in Text Categorization
Fluid interaction with high-resolution wall-size displays
Brook for GPUs: stream computing on graphics hardware
Role of mutator alleles in adaptive evolution.
Evolutionary capacitance as a general feature of complex gene networks.
Hsp90 as a capacitor for morphological evolution.
Total Functional Programming
Living in a smart environment - implications for the coming ubiquitous information society
Sense of community: A definition and theory
Micros for microbes: non-coding regulatory RNAs in bacteria.
Applied Multivariate Statistical Analysis
Discriminant Analysis by Gaussian Mixtures
Introduction to Automata Theory, Languages, and Computation
Kernel Methods in Computational Biology
Principles of protein-protein interactions.
Structure, function and evolution of multidomain proteins.
The third dimension for protein interactions and complexes.
Digital libraries: Situating use in changing information infrastructure
Towards a Theory of Scale-Free Graphs: Definition, Properties, and Implications (Extended Version)
Analysis of optimality in natural and perturbed metabolic networks
Adaptive evolution of non-coding DNA in Drosophila
The dual of substitution is redecoration
The Amber biomolecular simulation programs
Activity of striatal neurons reflects dynamic encoding and recoding of procedural memories
Natural selection on protein-coding genes in the human genome.
What Is a Macrostate? Subjective Observations and Objective Dynamics
The topological theory of defects in ordered media
Sweetening Ontologies with DOLCE
Does code decay? Assessing the evidence from change management data
The Nature of External Representations in Problem Solving
A cognitive analysis of tagging
Rapid prototyping of mobile context-aware applications: the Cyberguide case study
Telling More Than We Can Know: Verbal Reports on Mental Processes
Integration of Touch and Sound in Auditory Cortex
MODBASE, a database of annotated comparative protein structure models, and associated resources.
Evolutionary Biology
Principles of Population Genetics
The Wisdom of Crowds
Inference and Missing Data
{CSCW}: Four Characters in Search of a Context
Taking {CSCW} Seriously
Beyond the interface: encountering artifacts in use
Constructing Common Information Spaces.
Plans as Situated Action: An Activity Theory Approach to Workflow Systems
Detecting {Web} page structure for adaptive viewing on small form factor devices
Supporting Human Activities - Exploring Activity-Centered Computing
{AHAM}: a {Dexter}-based reference model for adaptive hypermedia
{AHA}! The adaptive hypermedia architecture
An annotation tool for {Web} browsers and its applications to information retrieval
{XML Schema}
Hypertext Paths and the {World-Wide Web}: Experiences with {Walden's Paths}
Studies in Ethnomethodology
Professional Vision.
Rooms: the use of multiple virtual workspaces to reduce space contention in a window-based graphical user interface
On the Move with a Magic Thing: Role Playing in Concept Design of Mobile Services and Devices.
Tangible Bits: Towards Seamless Interfaces between People, Bits and Atoms
Situated Learning: Legitimate peripheral participation.
{NESSIE}: An Awareness Environment for Cooperative Settings
{CyberCode}: designing augmented reality environments with visual tags
Pick-and-Drop: A Direct Manipulation Technique for Multiple Computer Environments
The evolution of Coda
Implicit Human Computer Interaction Through Context
Designing the User Interface
Participatory Design. Principles and Practices.
The Design and Implementation of a Mobile Learning Resource
{i-LAND}: An interactive Landscape for Creativity and Innovation.
Geographic location tags on digital images
Combating Web Spam with TrustRank
Semi-supervised learning using Gaussian fields and harmonic functions
SWIFT: {USING} {DISTRIBUTED} {DISK} {STRIPING} {TO} {PROVIDE} {HIGH} {I}/{O} {DATA} {RATES}
Addiction as a computational process gone awry.
Actions as Space-Time Shapes
Expectation grammars: leveraging high-level expectations for activity recognition
Interlinked fast and slow positive feedback loops drive reliable cell decisions.
Life as a manifestation of the second law of thermodynamics
Model selection in ecology and evolution
Explaining development and change in organizations
Thirteen Ways to Look at the Correlation Coefficient
MaxSub: an automated measure for the assessment of protein structure prediction quality.
Effective energy function for proteins in solution.
A survey on wireless mesh networks
Virtual Communities Companion: Everything You Need to Know about Online Communities
The Weblog Handbook: Practical Advice on Creating and Maintaining Your Blog
Free modeling with Rosetta in CASP6.
TASSER: An automated method for the prediction of protein tertiary structures in CASP6.
Implementing the iHOP concept for navigation of biomedical literature.
Generalized protein structure prediction based on combination of fold-recognition with de novo folding and evaluation of models.
Serverless network file systems
Folksonomy as a Complex Network
Reducing uncertainty in projections of extinction risk from climate change
ContextContacts: re-designing SmartPhone's contact book to support mobile awareness and collaboration
A comparative study of language support for generic programming
Service-Oriented Computing: Key Concepts and Principles
The Physiology of the Grid: An Open Grid Services Architecture for Distributed Systems Integration
Current Solutions for Web Service Composition
Service-Oriented Computing
Health related virtual communities and electronic support groups: systematic review of the effects of online peer to peer interactions
Metrics Based Refactoring
GTM: The Generative Topographic Mapping
Predicting a set of minimal free energy RNA secondary structures common to two sequences.
Media will never influence learning
Learning with Media
Information Interaction: Providing a Framework for Information Architecture
The impact of information architecture on academic web site usability
Understanding nature's catalytic toolkit.
{Computational design of a biologically active enzyme.}
{Divergent evolution of enzymatic function: mechanistically diverse superfamilies and functionally distinct suprafamilies.}
{Computational design of receptor and sensor proteins with novel functions.}
{THEMATICS: a simple computational predictor of enzyme function from structure.}
{Evolution of function in protein superfamilies, from a structural perspective.}
Naive Geography
Network analysis of metabolic enzyme evolution in Escherichia coli.
Superfamilies of Evolved and Designed Networks
Global organization of metabolic fluxes in the bacterium Escherichia coli.
Pathway evolution, structurally speaking.
Responses of ants to selective logging of a central Amazonian forest
Termite assemblage collapse along a land-use intensification gradient in lowland central Sumatra, Indonesia
Intellectual property. Enhanced: intellectual property landscape of the human genome.
Genetic association studies.
Open Problems in Artificial Life
Joint channel assignment and routing for throughput optimization in multi-radio wireless mesh networks
Automated docking to multiple target structures: Incorporation of protein mobility and structural water heterogeneity in AutoDock
Computer-based learning environments in mathematics
Economic Mechanism Design for computerized Agents
Web Usage Mining Using Artificial Ant Colony Clustering And Genetic Programming
Vertex similarity in networks
The design philosophy of the DARPA internet protocols
End-to-end Internet packet dynamics
A survey of rollback-recovery protocols in message-passing systems
Scalability in the XFS File System
The Struggle to Govern the Commons
Design experiments in educational research
A Manual for Writers of Term Papers, Theses, and Dissertations (Chicago Guides to Writing, Editing, and Publishing)
End-to-end available bandwidth: measurement methodology, dynamics, and relation with TCP throughput
Enhancing the Learner Experience
A Scan for Positively Selected Genes in the Genomes of Humans and Chimpanzees
Monads for Incremental Computing - Functional Pearl
Reusable Learning Object Authoring Guidelines: How to Build Modules, Lessons, and Topics
Quantum Field Theory in a Nutshell
A Repository of Metadata Crosswalks
On Clustering Validation Techniques
Sharp Transition towards Shared Vocabularies in Multi-Agent Systems
Swarm intelligence: from natural to artificial systems
QED: The Strange Theory of Light and Matter
On the Move: Technology, Mobility, and the Mediation of Social Time and Space
Methods of Text and Discourse Analysis
Reconstructing the metabolic network of a bacterium from its genome.
Application of Denaturing Gradient Gel Electrophoresis (DGGE) To Study the Diversity of Marine Picoeukaryotic Assemblages and Comparison of DGGE with Other Molecular Techniques
Bacterioplankton Compositions of Lakes and Oceans: a First Comparison Based on Fluorescence In Situ Hybridization
Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation
High Rate of Uptake of Organic Nitrogen Compounds by Prochlorococcus Cyanobacteria as a Key to Their Dominance in Oligotrophic Oceanic Waters
Lowering the barriers to programming: A taxonomy of programming environments and languages for novice programmers
Phylogenetic Identification and In Situ Detection of Individual Microbial Cells without Cultivation
Study of Genetic Diversity of Eukaryotic Picoplankton in Different Oceanic Regions by Small-Subunit rRNA Gene Cloning and Sequencing
Oceanic 18S rDNA sequences from picoplankton reveal unsuspected eukaryotic diversity
Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes
Mapping of picoeucaryotes in marine ecosystems with quantitative PCR of the 18S rRNA gene
Unremarkable computing
Where Mathematics Comes From: How the Embodied Mind Brings Mathematics into Being
Genome-scale approaches to resolving incongruence in molecular phylogenies
The analysis of visual motion: a comparison of neuronal and psychophysical performance.
Mapping determinants of human gene expression by regional and genome-wide association
A haplotype map of the human genome
Evolution of indirect reciprocity
The predictive power of online chatter
Complementary roles of basal ganglia and cerebellum in learning and motor control.
Improved patch-clamp techniques for high-resolution current recording from cells and cell-free membrane patches.
Scalability, fidelity, and containment in the potemkin virtual honeyfarm
Sampling protein conformations and pathways
Bro: a System for Detecting Network Intruders in Real-time
Computational capacity of the universe
Stateful intrusion detection for high-speed network's
Reconstructing a simple polytope from its graph
Hydrophobicity at small and large length scales
Ambient Findability: What We Find Changes Who We Become
Efficiency and power in genetic association studies
Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli.
Contributions of the amygdala to emotion processing: from animal models to human behavior.
Emotion Circuits in the Brain
What makes professional development effective? Results from a national sample of teachers
Social networks applied
Progress in Modeling of Protein Structures and Interactions
Teacher professional development, technology, and communities of practice: Are we putting the cart before the horse?
The episodic buffer: a new component of working memory?
The Neurobiology of Love
Improving molecular cancer class discovery through sparse non-negative matrix factorization
Wavelet-Based Statistical Signal Processing Using Hidden Markov Models
True atomic resolution in liquid by frequency-modulation atomic force microscopy
Uniprocessor Garbage Collection Techniques
Recursive Functions of Symbolic Expressions and Their Computation by Machine, Part I
A simple method to predict protein flexibility using secondary chemical shifts.
Planet of Slums
On the Bias of Traceroute Sampling; or, Power-law Degree Distributions in Regular Graphs
JFlow: practical mostly-static information flow control
Program analysis via graph reachability
An algorithm for tracking multiple targets
Answer Garden 2: merging organizational memory with collaborative help
Democracy as a latent variable
Analyzing Incomplete Political Science Data: An Alternative Algorithm for Multiple Imputation
Bargaining in Legislatures
Understanding Interaction Models: Improving Empirical Analyses
Missing Data: Our View of the State of the Art
Analysis of incomplete multivariate data
Veto players : how political institutions work
Mechanisms of gamma oscillations in the hippocampus of the behaving rat.
The Plausibility of Life: Resolving Darwin's Dilemma
Computing Machinery and Intelligence
Working memory and language: an overview
The ProtÃ©gÃ© OWL Plugin: An Open Development Environment for Semantic Web Applications
Geographic routing in social networks
The cobweb of life revealed by genome-scale estimates of horizontal gene transfer.
Silencing of microRNAs in vivo with 'antagomirs'.
SAAM: a method for analyzing the properties of software architectures
General systems theory - The skeleton of science.
An amplified sensitivity arising from covalent modification in biological systems.
The hallmarks of cancer.
ProteinÃ¢Â€Â“DNA binding specificity predictions with structural models
Unified segmentation
A single determinant dominates the rate of yeast protein evolution.
Estimating Continuous Distributions in Bayesian Classifiers
ARACHNE: A Whole-Genome Shotgun Assembler
A Graph-based Recommender System for Digital Library
Formalising Trust as a Computational Concept
Bayesian Network Analysis of Signaling Networks: A Primer
The Laws of Cool : Knowledge Work and the Culture of Information
How knowledge workers use the web
Understanding Comics
The social construction of the cultural mind: Imitative learning as a mechanism of human pedagogy
Finding Similar Files in a Large File System
Software Transactional Memory
Monitors: an operating system structuring concept
Scheduling multithreaded computations by work stealing
Thread Scheduling for Multiprogrammed Multiprocessors
Language support for lightweight transactions
Leases: an efficient fault-tolerant mechanism for distributed file cache consistency
Software transactional memory for dynamic-sized data structures
Algorithms for scalable synchronization on shared-memory multiprocessors
The Rise of the Creative Class: And How It's Transforming Work, Leisure, Community and Everyday Life
The Case for Selection at CCR5-Delta32.
Open Innovation: The New Imperative for Creating and Profiting from Technology
About Face 2.0: The Essentials of Interaction Design
Searching Emergent Vocabularies: Exploring Methods to Reduce Cognitive Load during Web Navigation and Resource Contribution
Stabilization Wedges: Solving the Climate Problem for the Next 50 Years with Current Technologies
Human Factors Issues in Virtual Environments: A Review of the Literature
Beyond Algorithms: An HCI Perspective on Recommender Systems
Short-term cardiovascular oscillations in man: measuring and modelling the physiologies.
Support for multitasking and background awareness using interactive peripheral displays
Metagenomics: DNA sequencing of environmental samples
Sense of virtual community - maintaining the experience of belonging
Advanced Compiler Design and Implementation
Term Rewriting and All That
Time and the Prisoner's Dilemma
Pivoted document length normalization
Interaction Design for Recommender Systems
The basal ganglia: focused selection and inhibition of competing motor programs
How laminar frontal cortex and basal ganglia circuits interact to control planned and reactive saccades
A computational model of action selection in the basal ganglia. I. A new functional anatomy
Metalearning and neuromodulation
Putting a spin on the dorsal-ventral divide of the striatum
Uniform inhibition of dopamine neurons in the ventral tegmental area by aversive stimuli
Prospective and Retrospective memory coding in the hippocampus
Uncertainty, neuromodulation and attention
Soft updates: a solution to the metadata update problem in file systems
Predicting the in vivo signature of human gene regulatory sequences
Dynamics of Mammalian Chromosome Evolution Inferred from Multispecies Comparative Maps
Personalizing search via automated analysis of interests and activities
Information Ecology: Mastering the Information and Knowledge Environment
Promoting literacy in a digital age: approaches to training for information literacy
Web Accessibility for Low Bandwidth Input
Fine-scale phylogenetic architecture of a complex bacterial community
Advanced Interaction in Context
Seeking a foundation for context-aware computing
Robotics, Motor Learning, and Neurologic Recovery
Principles of Self-Organization: Learning as Participation in Autocatakinetic Systems
Dewey, Vygotsky, and the Social Administration of the Individual: Constructivist Pedagogy as Systems of Ideas in Historical Spaces
Cognitive and Situated Learning Perspectives in Theory and Practice
A Constructivist Alternative to the Representational View of Mind in Mathematics Education
Atomic Force Microscope
Adhesion Forces between Individual Ligand-Receptor Pairs
The green fluorescent protein
At the root of embodied cognition: Cognitive science meets neurophysiology
Probabilistic author-topic models for information discovery
Dynamic graph algorithms
On the social constitution of mind: Bruner, Ilyenkov, and the defence of cultural psychology
Closed-form solution of absolute orientation using unit quaternions
Unsupervised Learning by Probabilistic Latent Semantic Analysis
The new higher level classification of eukaryotes with emphasis on the taxonomy of protists.
A protein interaction network of the malaria parasite Plasmodium falciparum
The Plasmodium protein network diverges from those of other eukaryotes
Intrinsic dynamics of an enzyme underlies catalysis.
Peripheral Members in Online Communities
Social Cognition, Artefacts, and Stigmergy: A Comparative Analysis of Theoretical Frameworks for the Understanding of Artefact-mediated Collaborative Activity
Interactive Health Communication Applications for people with chronic disease.
Taxonomy of XML Schema Languages using Formal Language Theory
Collaborative bibliography
Reconstructing immune phylogeny: new perspectives
Stabilizer Codes and Quantum Error Correction
Particle swarm optimization
Visualization Handbook
Ontology Based Personalized Search
MicroRNAs as oncogenes and tumor suppressors.
Scalable statistical bug isolation
Bayesian Inference of Phylogeny and Its Impact on Evolutionary Biology
Personalized web search by mapping user queries to categories
The multiplicity of domains in proteins.
Evolutionary population genetics of promoters: predicting binding sites and functional phylogenies.
DNA binding sites: representation and discovery.
Computer-supported cooperative work: history and focus
Computational design and experimental validation of oligonucleotide-sensing allosteric ribozymes
Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome
On the use of visualization to support awareness of human activities in software development: a survey and a framework
Recursively generated B-spline surfaces on arbitrary topological meshes
Elastically Deformable Models
The Chemical Basis of Morphogenesis
Pad: an alternative approach to the computer interface
Qualitative Inhaltsanalyse
Synthetic Worlds : The Business and Culture of Online Games
Instant messaging in teen life
Collaborating around collections: informing the continued development of photoware
Technology as Experience
An Ethnographic Study of Copy and Paste Programming Practices in OOPL
Introduction to Information Retrieval
Implementing declarative overlays
Security and Usability: Designing Secure Systems That People Can Use
Oncogenic pathway signatures in human cancers as a guide to targeted therapies
A quantitative protein interaction network for the ErbB receptors using protein microarrays
Dynamic class loading in the Java virtual machine
The {W}eb as a Graph
ExOR: opportunistic multi-hop routing for wireless networks
MDA: A Formal Approach to Game Design and Game Research
Smart-Its Friends: A Technique for Users to Easily Establish Connections between Smart Artefacts
Self-similar Scale-free Networks and Disassortativity
Probabilistic topic models
Spatial Augmented Reality: Merging Real and Virtual Worlds
Evolutionary Dynamics of Biological Games
A personalized search engine based on web-snippet hierarchical clustering
Technology probes: inspiring design for and with families
In vivo cross-linking and immunoprecipitation for studying dynamic Protein:DNA associations in a chromatin environment.
myGrid: personalised bioinformatics on the information grid.
Can Educational Computer Games Help Educators Learn About the Psychology of Learning Mathematics in Children?
Mariposa: {A} Wide-Area Distributed Database System
Metabolic network structure determines key aspects of functionality and regulation
Methods for Sampling Pages Uniformly from the World Wide Web
Epistemic frames for epistemic games
Mining event-related brain dynamics
Privacy Risks in Recommender Systems
Scalable Routing Overlay Networks
Significance analysis of time course microarray experiments
Tag Literacy
Fragment assembly with short reads
Using information theory to search for co-evolving residues in proteins.
A candidate locus for variation in dispersal rate in a butterfly metapopulation.
Ti clocks, and the ordering of events in a distributed system
Learning kernels from biological networks by maximizing entropy.
Computational identification of plant microRNAs and their targets, including a stress-induced miRNA.
Transductive Inference for Text Classification using Support Vector Machines
Combining phylogenetic and hidden Markov models in biosequence analysis.
Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer.
Abstract Interpretation Frameworks
The {Calculus of Constructions}
Social Processes and Proofs of Theorems and Programs
Dynamically Discovering Likely Program Invariants to Support Program Evolution.
An Empirical Study of Regression Test Selection Techniques
Genetic Programming: On the Programming of Computers by Means of Natural Selection
A Fast Algorithm for Finding Dominators in a Flowgraph
Search-based Software Test Data Generation: A Survey
Equation of State Calculations by Fast Computing Machines
An Introduction to Genetic Algorithms
Precise Interprocedural Dataflow Analysis via Graph Reachability
Depth-First Search and Linear Graph Algorithms
Chaff: Engineering an Efficient {SAT} Solver
Learning distance functions for image retrieval
A democracy of groups
Support vector machine learning for interdependent and structured output spaces
Prediction of functional specificity determinants from protein sequences using log-likelihood ratios
The Social Construction of Facts and Artefacts: Or How the Sociology of Science and the Sociology of Technology Might Benefit Each Other
Software Product Line Engineering: Foundations, Principles and Techniques
Functional Programming with Overloading and Higher-Order Polymorphism
Constrained geometric simulation of diffusive motion in proteins
Protein flexibility using constraints from molecular dynamics simulations
A mutation accumulation assay reveals a broad capacity for rapid evolution of gene expression
Two-dimensional gas of massless Dirac fermions in graphene
Evaluation of Interest Point Detectors
A comparative study of six European databases of medically oriented Web resources.
Memory and the self
Animation: can it facilitate?
Language and Mind
Does the Chimpanzee have a Theory of Mind?
Identifying Similar Code with Program Dependence Graphs
Short-term synaptic plasticity.
Becoming Wikipedian: Transformation of Participation in a Collaborative Online Encyclopedia
A social network caught in the Web
Automation and customization of rendered web pages
MACAW: A Media Access Protocol for Wireless {LAN}'s
Communication in neuronal networks.
Multiple motor learning experiences enhance motor adaptability.
MACiE: a database of enzyme reaction mechanisms.
An insight into domain combinations.
The {SWISS}-{PROT} protein knowledgebase and its supplement {T}r{EMBL} in 2003.
Moonlighting proteins: old proteins learning new tricks.
Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features.
Statistical potentials for fold assessment.
The Pathway Tools software
GOtcha: a new method for prediction of protein function assessed by the annotation of seven genomes
How different amino acid sequences determine similar protein structures: the structure and evolutionary dynamics of the globins.
Selectionism and Neutralism in Molecular Evolution
Evaluation of an Improved Branch-Site Likelihood Method for Detecting Positive Selection at the Molecular Level
PERSIVAL, a system for personalized search and summarization over multimedia healthcare information
Theta rhythms coordinate hippocampal-prefrontal interactions in a spatial memory task.
The relationship between Recall and Precision
A Trainable Document Summarizer
The Use of MMR, Diversity-Based Reranking for Reordering Documents and Producing Summaries
Recovering documentation-to-source-code traceability links using latent semantic indexing
Using latent semantic analysis to identify similarities in source code to support program understanding
MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model
Activity theory: implications for human-computer interaction
Functional neuroanatomy of emotion: a meta-analysis of emotion activation studies in PET and fMRI.
Implementing remote procedure calls
Targeted gene expression as a means of altering cell fates and generating dominant phenotypes.
Eye Tracking Methodology: Theory and Practice
Active Learning for Structure in Bayesian Networks
Building a Semantic Wiki
Locomotor activity in spinal man: significance of afferent input from joint and load receptors.
Differential processing of objects under various viewing conditions in the human lateral occipital complex.
Vision science: photons to phenomenology
Borders of multiple visual areas in humans revealed by functional magnetic resonance imaging.
The Gaia Methodology for Agent-Oriented Analysis and Design
Discourse segmentation of multi-party conversation
Human nonÃ¢Â€Âsynonymous SNPs: server and survey
Ancient and Recent Positive Selection Transformed Opioid cis-Regulation in Humans
Gene finding with a hidden Markov model of genome structure and  evolution
Growing Bayesian network models of gene networks from seed genes
The Phenomenon of Life: The Nature of Order, Book 1
Educating the Net Generation
GeneWise and Genomewise.
The Ensembl automatic gene annotation system.
An Assessment of Gene Prediction Accuracy in Large DNA Sequences
The topological relationship between the large-scale attributes and local interaction patterns of complex networks.
Inferring Domainâ€“Domain Interactions From Proteinâ€“Protein Interactions
An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments.
Co-evolution of proteins with their interaction partners1
Supercooled liquids and the glass transition
Colloidosomes: Selectively Permeable Capsules Composed of Colloidal Particles
Version models for software configuration management
DynaMine: finding common error patterns by mining software revision histories
Misconceptions Reconceived: A Constructivist Analysis of Knowledge in Transition
Lexical Frequency Profiles: From Monte Carlo to the Real World: A Response to Meara (2005)
The Digital Michelangelo Project: 3D Scanning Of Large Statues
Group and Topic Discovery from Relations and Text
JXTA: A Network Programming Environment
Stable Algorithms for Link Analysis
Time and Narrative, Volume 1 (Time & Narrative)
Emergent {S}emantics {P}rinciples and {I}ssues
Understanding the real-world performance of carrier sense
Link-level measurements from an 802.11b mesh network
Self-organized criticality
Random walks in biology
Self-organization in biological systems
Collective memory and spatial sorting in animal groups
The importance of being discrete (and spatial)
Cellular automata approaches to biological modeling
Confidence limits on phylogenies: an approach using the bootstrap
The genetical evolution of social behaviour. II
Dynamical aspects of animal grouping: swarms, schools, flocks and herds.
Steering behaviors for autonomous characters
Novel type of phase transition in a system of self-driven particles
Survey of Preference Elicitation Methods
A survey of software refactoring
The Jalview Java alignment editor.
Global identification of human transcribed sequences with genome tiling arrays.
A gene expression map for the euchromatic genome of Drosophila melanogaster.
Ajax in Action
A comprehensive transcript index of the human genome generated using microarrays and computational approaches
Groups in Social Software: Utilizing Tagging to Integrate Individual Contexts for Social Navigation
Modelling of coastal evolution on yearly to decadal time scales
NiagaraCQ: a scalable continuous query system for {Internet} databases
Efficient Filtering of XML Documents for Selective Dissemination of Information
Fast Multiscale Image Segmentation
Incorporating user search behavior into relevance feedback
Venti: a new approach to archival storage
Force production by disassembling microtubules
Impact of regional climate change on human health
Gene expression profiling of NRF2-mediated protection against oxidative injury.
A statistical approach to machine translation
The mathematics of statistical machine translation: parameter estimation
Simulating normalizing constants: from importance sampling to bridge sampling to path sampling
Sampling search-engine results
HGR: Hybrid Geographic and Virtual Coordinate Routing for WSN
Selective Logging in the Brazilian Amazon
Human MicroRNA Targets
Fast and effective prediction of microRNA/target duplexes
MicroRNA targets in Drosophila.
Prediction of mammalian microRNA targets.
Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions.
Incremental Singular Value Decomposition of Uncertain Data with Missing Values
Importance of input perturbations and stochastic gene expression in the reverse engineering of genetic regulatory networks: insights from an identifiability analysis of an in silico network.
Empirical and structural models for insertions and deletions in the divergent evolution of proteins.
Model Uncertainty, Data Mining and Statistical Inference
Alternative splicing and genome complexity
Gene structure prediction and alternative splicing analysis using genomically aligned ESTs.
RASE: recognition of alternatively spliced exons in C.elegans
Genome-wide detection of alternative splicing in expressed sequences of human genes.
The ethnography of infrastructure
Why be nice? Psychological constraints on the evolution of cooperation
THE MODERN MOLECULAR CLOCK
MANET simulation studies: the incredibles
Formation of a Motor Memory by Action Observation
Visualizing a discipline: An author co-citation analysis of information science, 1972-1995
Divergent evolution within protein superfolds inferred from profile-based phylogenetics.
Intrinsic noise in gene regulatory networks
Virtualizing I/O Devices on VMware Workstation's Hosted Virtual Machine Monitor
MAMMOTH (matching molecular models obtained from theory): an automated method for model comparison.
Fluorescence microscopy
A guide to choosing fluorescent proteins
Fading channels: information-theoretic and communications aspects
{Amino acid substitution matrices from an information theoretic perspective}
{Evaluation of gene structure prediction programs}
A computational approach to identify genes for functional {RNAs} in genomic sequences
{DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment}
A statistical sampling algorithm for {RNA} secondary structure prediction
What is dynamic programming?
Profile hidden Markov models
A systematic approach to dynamic programming in Bioinformatics
{Significant improvement in accuracy of multiple protein sequence alignments by iterative refinement as assessed by reference to structural alignments}
The accuracy of ribosomal {RNA} comparative structure models
{Evolutionary HMMs: a Bayesian approach to multiple alignment}
{Alignment of RNA base pairing probability matrices}
{Accelerated probabilistic inference of RNA structure evolution}
{RSEARCH: finding homologs of single structured RNA sequences}
{RNA} secondary structure prediction using stochastic context-free grammars and evolutionary history
Identification of novel genes coding for small expressed {RNAs}
{Quality assessment of multiple alignment programs}
{A method for aligning RNA secondary structures and its application to RNA motif detection}
{MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform}
Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of {RNA} secondary structure
The Evolution of Controlled Multitasked Gene Networks: The Role of Introns and Other Noncoding {RNAs} in the Development of Complex Organisms
Non-coding {RNAs}: the architects of eukaryotic complexity
Conservation of the sequence and temporal expression of let-7 heterochronic regulatory {RNA}
The path from the {RNA} world
{Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics}
Sequence Logos: A New Way to Display Consensus Sequences
{Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes}
The Major Transitions in Evolution
{T-Coffee: A novel method for fast and accurate multiple sequence alignment.}
{A comprehensive comparison of multiple sequence alignment programs}
An Evolutionary Model for Maximum Likelihood Alignment of {DNA} Sequences
{How RNA folds}
Systematic evolution of ligands by exponential enrichment: {RNA} ligands to bacteriophage {T4 DNA} polymerase
{Riboswitches: the oldest mechanism for the regulation of gene expression?}
Simple fast algorithms for the editing distance between trees and related problems
Calculating nucleic acid secondary structure
{RNA} secondary structures and their prediction
{Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes}
{Evaluation of the suitability of free-energy minimization using nearest-neighbor energy parameters for RNA secondary structure prediction}
{Genome sequence of the Brown Norway rat yields insights into mammalian evolution}
{Profile analysis: detection of distantly related proteins}
{Comparative recombination rates in the rat, mouse, and human genomes}
{Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes}
{Hidden Markov models in computational biology. Applications to protein modeling}
{Benchmarking tools for the alignment of functional noncoding DNA}
{Improved tools for biological sequence comparison}
{RNA sequence evolution with secondary structure constraints: comparison of substitution rate models using maximum-likelihood methods}
{Pfam: multiple sequence alignments and HMM-profiles of protein domains}
{Consensus folding of aligned sequences as a new measure for the detection of functional {RNAs} by comparative genomics}
{Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs}
Cognition in practice : mind, mathematics, and culture in everyday life
Everyday Cognition: Its Development in Social Context
Distinguishing homologous from analogous proteins.
Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima
Mining the Web for Synonyms: PMI--IR versus LSA on TOEFL
Weblogs and the Epistemology of the News: Some Trends in Online Journalism
Quantum Computation
The emerging conceptual framework of evolutionary developmental biology
Phylogenetic classification and the universal tree.
The Video Game Theory Reader
Use of Artificial Genomes in Assessing Methods for Atypical Gene Detection.
Earlier Web Usage Statistics as Predictors of Later Citation Impact
Computational methods for the identification of differential and coordinated gene expression.
On Relevance, Probabilistic Indexing and Information Retrieval
The Subsystems Approach to Genome Annotation and its Use in the Project to Annotate 1000 Genomes
PageRank without hyperlinks: structural re-ranking using links induced by language models
ANTLR: A Predicated-LL(k) Parser Generator
{The Design of a Pretty-printing Library}
Enforcing high-level protocols in low-level software
{Haskell~98} Language and Libraries, The Revised Report
Transaction Processing: Concepts and Techniques
Memory Consistency and Event Ordering in Scalable Shared-Memory Multiprocessors
The Chemical Abstract Machine
Pedagogical Design of Computer Mediated Communication Tasks: Learning Objectives and Technological Capabilities
Modeling and Rendering Architecture from Photographs: {A} Hybrid Geometry- and Image-Based Approach
Systematic functional analysis of the Caenorhabditis elegans genome using RNAi
A combined computational-experimental approach predicts human microRNA targets.
A Theory of Structure: Duality, Agency, and Transformation
An Extensive Class of Small RNAs in Caenorhabditis elegans
The microRNAs of Caenorhabditis elegans
Answering queries using views: {A} survey
{SemperWiki}: a semantic personal {Wiki}
Magnet: Supporting Navigation in Semistructured Data Environments
A Brief History of Process Algebra
The Self-Serv Environment for Web Services Composition
Sesame: {A} Generic Architecture for Storing and Querying {RDF} and {RDF Schema}
Software Metrics: {A} Rigorous and Practical Approach
An overview of workflow management: from process modeling to workflow automation infrastructure
Seven Myths of Formal Methods
{Petri} nets: properties, analysis, and applications
The temporal logic of programs
Advanced Workflow Patterns
{YAWL}: Yet Another Workflow Language
Design and Implementation of the {YAWL} System
Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans.
Consistent image registration.
Search in weighted complex networks
Highways of gene sharing in prokaryotes
Using Bayes' rule to model multisensory enhancement in the superior colliculus.
Recognition-by-components: a theory of human image understanding.
Neuronal Avalanches in Neocortical Circuits
Politics of Piety : The Islamic Revival and the Feminist Subject
Being Bayesian About Network Structure. A Bayesian Approach to Structure Discovery in Bayesian Networks
Deciding advantageously before knowing the advantageous strategy.
A core calculus of dependency
Language-Based Information-Flow Security
EVOLUTIONARY RELATIONSHIP OF DNA SEQUENCES IN FINITE POPULATIONS
Get ready to GO! A biologist's guide to the Gene Ontology
Using citation data to improve retrieval from MEDLINE.
A Quantitative Description of Membrane Current and its Application to Conduction and Excitation in Nerve
A History of Instructional Design and Technology: Part II: A History of Instructional Design
404 not found: the stability and persistence of URLs published in MEDLINE
Grafting: fast, incremental feature selection by gradient descent in function space
Predicting How People Play Games: Reinforcement Learning in Experimental Games with Unique, Mixed Strategy Equilibria
E-Learning : Concepts and Practice
What are the computations of the cerebellum the basal ganglia and the cerebral cortex?
Actor-critic models of the basal ganglia: new anatomical and computational perspectives
A Tutorial on (Co)Algebras and (Co)Induction
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository.
Markov Chain Monte Carlo and Gibbs Sampling
Monitoring dynamics of single-cell gene expression over multiple cell cycles
CRAWDAD: A Community Resource for Archiving Wireless Data at Dartmouth
On Photography
Query chains: learning to rank from implicit feedback
Expansion of the BioCyc collection of pathway/genome databases to 160 genomes
An analysis of the feasibility of short read sequencing
Nexus: Small Worlds and the Groundbreaking Theory of Networks
Text mining and ontologies in biomedicine: Making sense of raw text
The next generation of literature analysis: integration of genomic analysis into text mining.
Option pricing: A simplified approach
Choosing Appropriate Substitution Models for the Phylogenetic Analysis of Protein-Coding Sequences.
Analysis of dynamic brain imaging data.
Theory of collective opinion shifts: from smooth trends to abrupt swings
Uncertainty-based competition between prefrontal and dorsolateral striatal systems for behavioral control
A natural approach to studying vision
Design principles of a bacterial signalling network
Neural measures reveal individual differences in controlling access to working memory
Foundations for engineering biology
Reconstruction of genetic circuits
Synthetic biology: Engineering Escherichia coli to see light
The effects of common ground and perspective on domains of referential interpretation
TrustGuard: Countering Vulnerabilities in Reputation Management for Decentralized Overlay Networks
Shilling recommender systems for fun and profit
Slouching Toward the Ordinary: Current Trends in Computer-Mediated Communication
The Augmented Social Network
Automatic 3D Protein Structure Classification without Structural Alignment
Immediate-Head Parsing for Language Models
WebLogo: a sequence logo generator.
Pegasys: software for executing and integrating analyses of biological sequences.
A data integration methodology for systems biology: Experimental verification.
A data integration methodology for systems biology
Stem cells, cancer, and cancer stem cells
Mass spectrometry-based proteomics
From words to literature in structural proteomics
Self-Organized Stigmergic Document Maps: Environment As Mechanism for Context Learning
Less is More - Genetic Optimisation of Nearest Neighbour Classifiers
Map Segmentation by Colour Cube Genetic K-Mean Clustering
The Biological Concept of Neoteny in Evolutionary Colour Image Segmentation: Simple Experiments in Simple Non-Memetic Genetic Algorithms
Artificial Ant Colonies in Digital Image Habitats - A Mass Behaviour Effect Study on Pattern Recognition
Swarms on Continuous Data
Image Colour Segmentation by Genetic Algorithms
From Feature Extraction to Classification: A Multidisciplinary Approach applied to Portuguese Granites
On Image Filtering, Noise and Morphological Size Intensity Diagrams
Artificial Neoteny In Evolutionary Image Segmentation
Intrusion Detection Systems using Adaptive Regression Splines
Swarming around Shellfish Larvae Images
ANTIDS: Self-Organized Ant-based Clustering Model for Intrusion Detection System
Exploiting and Evolving Rn Mathematical Morphology Feature Spaces
Social Cognitive Maps, Swarm Collective Perception and Distributed Search on Dynamic Landscapes
Varying the Population Size of Artificial Foraging Swarms on Time Varying Landscapes
Stock Market Prediction using Multi Expression Programming
On Ants, Bacteria and Dynamic Environments
Self-Regulated Artificial Ant Colonies on Digital Image Habitats
Societal Implicit Memory and his Speed on Tracking Extrema over Dynamic Environments using Self-Regulatory Swarms
On Self-Regulated Swarms, Societal Memory, Speed and Dynamics
Dynamic queries for information exploration: an implementation and evaluation
Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis
Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.
Common Pattern of Evolution of Gene Expression Level and Protein Sequence in Drosophila
Metabolic network analysis of the causes and evolution of enzyme dispensability in yeast.
The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications.
The proteins of linked genes evolve at similar rates.
Estimating Synonymous and Nonsynonymous Substitution Rates Under Realistic Evolutionary Models
How brains beware: neural mechanisms of emotional attention
Domain-specificity and theory of mind: evaluating neuropsychological evidence
GameFlow: a model for evaluating player enjoyment in games
Using heuristics to evaluate the playability of games
Packet scheduling for QoS support in IEEE 802.16 broadband wireless access systems
Archival science and postmodernism: new formulations for old concepts
Detection and sorting of neural spikes using wavelet packets.
Non-Functional Requirements in Software Engineering
Simultaneous paired intracellular and tetrode recordings for evaluating the performance of spike sorting algorithms
Quantum information theory
Korat: automated testing based on Java predicates
Signal processing methods for the automatic transcription of music
Towards a New Museum
Ecologies, outreach, and the evolution of medical libraries.
Entanglement and the Foundations of Statistical Mechanics
Learning Bayesian networks with local structure
The egalitarian effect of search engines
Complementary competencies: public health and health sciences librarianship.
How are complex cell properties adapted to the statistics of natural stimuli?
Prediction and decoding of retinal ganglion cell responses with a probabilistic spiking model.
Development and assessment of specialized liaison librarian services: clinical vs. basic science in a veterinary medicine setting.
Conceptual and mathematical relationships among methods for spatial analysis
The consequences of spatial structure for the design and analysis of ecological field surveys
Spatial autocorrelation and autoregressive models in ecology
Integrating the statistical analysis of spatial data in ecology
Illustrations and guidelines for selecting statistical methods for quantifying spatial pattern in ecological data
Modelling epiphyte metapopulation dynamics in a dynamic forest landscape
Why We Buy: The Science Of Shopping
The Paradox of Choice: Why More Is Less
Semistructured data
Fundamental issues in systems biology.
A Statistical Paradigm for Neural Spike Train Decoding Applied to Position Prediction from Ensemble Firing Patterns of Rat Hippocampal Place Cells
Document clustering using word clusters via the information bottleneck method
A gene network for navigating the literature.
Profiting from technological innovation: Implications for integration, collaboration, licensing and public policy
Motion illusions as optimal percepts.
Metagenomics: Application of Genomics to Uncultured Microorganisms
METAGENOMICS: Genomic Analysis of Microbial Communities
An introduction to computing with neural nets
Clustering of highly homologous sequences to reduce the size of large protein databases
Current practice in measuring usability: Challenges to usability studies and research
Extraction of regulatory gene/protein networks from Medline.
Fundamentals of quantum information theory
On the use of windows for harmonic analysis with the discrete Fourier transform
Ecological consequences of phenotypic plasticity
Aligning Theory and Web-based Instructional Design Practice with Design Patterns
Flow: The Psychology of Optimal Experience
Adaptive evolution of bacterial metabolic networks by horizontal gene transfer
Color and texture descriptors
Modelling protein docking using shape complementarity, electrostatics and biochemical information.
The Human Experience
Systematic Discovery of New Recognition Peptides Mediating Protein Interaction Networks
Systems biology in drug discovery
Ontology of Folksonomy: A Mash-up of Apples and Oranges
Systematic genome-wide screens of gene function
Domain Rearrangements in Protein Evolution
The Effects of Artificial Selection on the Maize Genome
Empirical force fields for biological macromolecules: Overview and issues
Core mechanisms in ?theory of mind?
Method for unsupervised classification of multiunit neural signal recording under low signal-to-noise ratio.
Not just a matter of time: Field differences and the shaping of electronic media in supporting scientific communication
The Widespread Impact of Mammalian MicroRNAs on mRNA Repression and Evolution
Identifying the conserved network of cis-regulatory sites of a eukaryotic genome
Horizontal gene transfer: A critical view
Using Library Classification Schemes for Internet Resources
Approximation by superpositions of a sigmoidal function
OPTICS: ordering points to identify the clustering structure
The boosting approach to machine learning: An overview
Improved Boosting Using Confidence-rated Predictions
Medical literature as a potential source of new knowledge
The language of genes
Artemis: sequence visualization and annotation
The Bioperl toolkit: Perl modules for the life sciences.
TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences
Representation of Action-Specific Reward Values in the Striatum
Cognitive Factors in Programming with Diagrams
Least angle regression
Additive logistic regression: a statistical view of boosting
A note on using permutation-based false discovery rate estimates to compare different analysis methods for microarray data
Quantum Algorithms and the Fourier Transform
Global analysis of protein phosphorylation in yeast.
Scalable multiparticle entanglement of trapped ions
Spike train metrics.
A Probabilistic Approach to Collaborative Multi-Robot Localization
A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach.
The species-area relationship does not have an asymptote!
Assessing the accuracy of prediction algorithms for classification: an overview
A community-aware search engine
Incentives for sharing in peer-to-peer networks
Free-riding and whitewashing in peer-to-peer systems
Simulating Physics with Computers
Bagging, Boosting, and {C4. 5}
The genesis and evolution of homeobox gene clusters
All of Statistics: A Concise Course in Statistical Inference (Springer Texts in Statistics)
Half-Real: Video Games between Real Rules and Fictional Worlds
Pocket switched networks and human mobility in conference environments
Peer-to-Peer Overlay Networks: A Survey
A re-examination of relevance: toward a dynamic, situational definition*
Computer Games: Text, Narrative And Play
Computer simulation using particles.
The ins and outs of DNA transfer in bacteria.
Evaluation and reparametrization of the OPLS-AA force field for proteins via comparison with accurate quantum chemical calculations on peptides
Image matching as a diffusion process: an analogy with Maxwell's demons.
HAMMER: hierarchical attribute matching mechanism for elastic registration.
Voxel-based morphometry--the methods.
Gain modulation from background synaptic input.
Bioinformatics: an introduction for computer scientists
Diffusion Tensor MR Imaging of the Human Brain
Image Registration Methods: a Survey
Multimodality Image Registration by Maximization of Mutual Information
Image Quality Assessment: from Error Visibility to Structural Similarity
Finite Markov Chains and Algorithmic Applications
A Fine-Scale Map of Recombination Rates and Hotspots Across the Human Genome
Data MULEs: modeling a three-tier architecture for sparse sensor networks
FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties.
Once found, what then? A study of
Fault-tolerant quantum computation
Designing for usability: key principles and what designers think
Information search and re-access strategies of experienced web users
A graph-theory algorithm for rapid protein side-chain prediction.
Effective energy functions for protein structure prediction.
Molecular recognition and docking algorithms.
Is Context-Aware Computing Taking Control Away from the User? Three levels of interactivity examined
Activity Recognition from User-Annotated Acceleration Data
Smoothed analysis of algorithms: Why the simplex algorithm usually takes polynomial time
An empirical study of fine-grained software modifications
SenSay: A Context-Aware Mobile Phone
Quasispecies diversity determines pathogenesis through cooperative interactions in a viral population
Composable memory transactions
Ontology of Folksonomy
Knowledge and Organization: A Social-Practice Perspective
WebSeer: An Image Search Engine for the World Wide Web
Gossip-based aggregation in large dynamic networks
Identifying reasons for software changes using historic databases
Quantum information with continuous variables
Revisiting Piaget and Vigotsky: In Search of a Learning Model for Technology Education
Peer-to-Peer Caching Schemes to Address Flash Crowds
{S}ecure routing for structured peer-to-peer overlay networks
Managing Trust in a Peer-2-Peer Information System
Slash(dot) and burn: distributed moderation in a large online conversation space
Collaborative Reputation Mechanisms in Electronic Marketplaces
Mitochondria and apoptosis
Tissue engineering
The evolution of transcriptional regulation in eukaryotes
Design issues for c{DNA} microarray experiments
Cooperative cargo transport by several molecular motors
Connectionism and the study of change
Connectionism and dynamic systems: are they really different?
Knowledge-Based Opportunistic Forwarding in Vehicular Wireless Ad Hoc Networks
SMOTE: Synthetic minority over-sampling technique
Mutual-information-based registration of medical images: a survey
Estimating the number of clusters in a data set via the gap statistic
A morphable model for the synthesis of 3D faces
Combining sensory information: mandatory fusion within, but not between, senses.
Hierarchical Bayesian Inference in Networks of Spiking Neurons
{A}gent{S}peak({L}): {BDI} Agents Speak Out in a Logical Computable Language
On the relations between the direction of two-dimensional arm movements and cell discharge in primate motor cortex.
Evolving Object-Oriented Designs with Refactorings
The Hidden Power of Social Networks: Understanding How Work Really Gets Done in Organizations
Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans
The Chemistry Development Kit (CDK):â€‰ An Open-Source Java Library for Chemo- and Bioinformatics
Non-negative matrix factorization with sparseness constraints
The intellectual foundation of information organization
Designing Virtual Worlds
Developing Online Games: An Insider's Guide
Man, Play and Games
Patterns in game design
Sets for Mathematics
PCA versus LDA
Categories for the Working Mathematician (Graduate Texts in Mathematics)
Algorithms for Non-negative Matrix Factorization
Minimum information requested in the annotation of biochemical models (MIRIAM)
Cities and Complexity : Understanding Cities with Cellular Automata, Agent-Based Models, and Fractals
Handbook of computer game studies
Improved prediction of signal peptides: SignalP 3.0.
A theory of timed automata
A computing procedure for quantification theory
The Temporal Logic of Actions
Composing Domain-Specific Design Environments
Steps toward Artificial Intelligence
The inductive approach to verifying cryptographic protocols
Communication Theory of Secrecy Systems
A theory of objects
Systematic software development using {VDM}
Principles of Artificial Intelligence
Constructive Mathematics and Computer Programming
Synthesis: An Efficient Implementation of Fundamental Operating System Services
How to write a proof
Approximation Algorithms
Navigating towards sustainable development: A system dynamics approach
Advancing the art of simulation in the social sciences
Designing Qualitative Research
Do We Know What the Early Visual System Does?
The Attention Economy: Understanding the New Currency of Business
Selective visual attention and perceptual coherence.
Repetition and the brain: neural models of stimulus-specific effects
Electromagnetically induced transparency with tunable single-photon pulses
Genome sequence, comparative analysis and haplotype structure of the domestic dog
Computational Alanine Scanning of Protein-Protein Interfaces
Analyzing Correlation between Trust and User Similarity in Online Communities
Clustering items for collaborative filtering
Ontological user profiling in recommender systems
A graph model for E-commerce recommender systems
Implicit Interest Indicators
Methods and metrics for cold-start recommendations
Application of dimensionality reduction in recommender systems--a case study
Collaborative Filtering by Personality Diagnosis: A Hybrid Memory- and Model-based Approach
Beyond Recommender Systems: Helping People Help Each Other
Combining content-based and collaborative filters in an online newspaper
Macromolecular crowding: obvious but underappreciated.
A Dynamic Theory of Organizational Knowledge Creation
Semantic Wikipedia
The nature of the language faculty and its implications for evolution of language (Reply to Fitch, Hauser, and Chomsky)
Paper Prototyping: The Fast and Easy Way to Design and Refine User Interfaces
Characterizing the hemodynamic response: Effects of presentation rate, sampling procedure, and the possibility of ordering brain activity based on relative timing
Empirical Validation of Object-Oriented Metrics on Open Source Software for Fault Prediction
Mangrove: Enticing Ordinary People onto the Semantic Web via Instant Gratification
Comparison of automated docking programs as virtual screening tools.
Breaking the myths of rewards: An exploratory study of attitudes about knowledge sharing
Type-based race detection for Java
Collective Intelligence: Mankind's Emerging World in Cyberspace
Neural network dynamics.
A logical analysis of the Drosophila gap-gene system.
Genomics and Natural Language Processing
The Game Design Reader : A Rules of Play Anthology
A comparison of methods for multiclass support vector machines
Novel Approach to Nonlinear/Non-{Gaussian} {Bayesian} State Estimation
A Gentle Tutorial of the {EM} Algorithm and its Application to Parameter Estimation for {G}aussian Mixture and Hidden {M}arkov Models
Energy-Efficient Communication Protocol for Wireless Microsensor Networks
An Iterative Image Registration Technique with an Application to Stereo Vision
The particle swarm - explosion, stability, and convergence in a multidimensional complex space
Data Analysis with Bayesian Networks: {A} Bootstrap Approach
DNA methylation and human disease
Comparison of Discrimination Methods for the Classification of Tumors Using Gene Expression Data
Gene expression correlates of clinical prostate cancer behavior
Gene expression profiling predicts clinical outcome of breast cancer
Image metrics in the statistical analysis of DNA microarray data
Experimental Design for gene expression microarrays
Predicting the clinical status of human breast cancer by using gene expression profiles
Assessing Gene Significance from cDNA Microarray Expression Data via Mixed Models
Validating Clustering for Gene Expression Data
Singular value decomposition for genome-wide expression data processing and modeling
Analysis of variance for gene expression microarray data
Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cDNA hybridizations
Principal components analysis to summarize microarray experiments: application to sporulation time series
Systematic variation in gene expression patterns in human cancer cell lines
A gene expression database for the molecular pharmacology of cancer
Estimating the number of clusters in a dataset via the gap statistic
High density synthetic oligonucleotide arrays
Semi-Supervised Support Vector Machines
A Hierarchical Latent Variable Model for Data Visualization
Matrix Analysis
Yeast microarrays for genome wide parallel genetic and gene expression analysis
Simplified Support Vector Decision Rules
A Comparison of Selection Schemes used in Genetic Algorithms
A Study of Cross-Validation and Bootstrap for Accuracy Estimation and Model Selection
{B}ayesian Interpolation
A Review of Evolutionary Artificial Neural Networks
Light-directed, spatially addressable parallel chemical synthesis
A Comparative Analysis of Selection Schemes Used in Genetic Algorithms
Practical Methods of Optimization
y do tngrs luv 2 txt msg?
Wikipedia as Participatory Journalism: Reliable Sources? Metrics for evaluating collaborative media as a news resource
Outline of a Theory of Practice (Cambridge Studies in Social and Cultural Anthropology)
Rapid Chiral Assembly of Rigid DNA Building Blocks for Molecular Nanofabrication
RFID Security and Privacy: A Research Survey
Divergence Measures Based on the Shannon Entropy
A Systems Model of Signaling Identifies a Molecular Basis Set for Cytokine-Induced Apoptosis
A theory of causal learning in children: causal maps and Bayes nets.
Gene Expression During the Life Cycle of Drosophila melanogaster
The community of the self.
Markovian models for sequential data
Doing Cultural Studies: The Story of the Sony Walkman (Culture, Media & Identities, Vol. 1) (Culture, Media and Identities series)
Generating hypotheses by discovering implicit associations in the literature: a case report of a search for new potential therapeutic uses for thalidomide.
Electrostatics of nanosystems: application to microtubules and the ribosome
VMD: visual molecular dynamics
TinyDB: an acquisitional query processing system for sensor networks
Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis.
Self-organized formation of topologically correct feature maps
Configuring Awareness
Robustness of the BMP morphogen gradient in Drosophila embryonic patterning.
Making working memory work: a computational model of learning in the prefrontal cortex and basal ganglia.
Polychronization: Computation with Spikes
Experiments in academic social book marking with Unalog
Representations of molecular pathways: an evaluation of SBML, PSI MI and BioPAX
An ontology-driven framework for data transformation in scientific workflows
Mutations of bacteria from virus sensitivity to virus resistance
The role of experimentation in software engineering: past, current, and future
Qualitative methods in empirical studies of software engineering
Social Psychology
Conformational change of proteins arising from normal mode calculations
Dynamic Complex Formation During the Yeast Cell Cycle
Comparative evaluation of 11 scoring functions for molecular docking.
"The ""impact factor"" revisited."
Rondo: A Programming Platform for Generic Model Management
Applying model management to classical meta data problems
Why We Play Games: Four Keys to More Emotion Without Story
The General Theory of Employment, Interest and Money
Real-time quantification of microRNAs by stem-loop RT-PCR
Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data
SCOP: a structural classification of proteins database for the investigation of sequences and structures.
Inductive Logic Programming: Theory and Methods
Inductive Logic {P}rogramming
A Bayesian Approach to Filtering Junk E-Mail
Temporal binding and the neural correlates of sensory awareness.
Parsing Biomedical Literature
Intelligence Reframed: Multiple Intelligences for the 21st Century
The Hive Mind: Folksonomies and User-Based Tagging
Gene regulatory networks for development
Animal MicroRNAs Confer Robustness to Gene Expression and Have a Significant Impact on 3â€²UTR Evolution
A Comparison of the Performance of Different Metaheuristics on the Timetabling Problem
A new algorithm for RNA secondary structure design.
RNAsoft: A suite of RNA secondary structure prediction and design software tools.
A bayesian statistical algorithm for RNA secondary structure prediction.
Improving Security Using Extensible Lightweight Static Analysis
Probabilistic Latent Semantic Analysis
Evolution of Biological Complexity
Shape Matching and Object Recognition Using Low Distortion Correspondences
Object Recognition with Features Inspired by Visual Cortex
Polynomial-Time Algorithms for Prime Factorization and Discrete Logarithms on a Quantum Computer
Communities of Practice: The Organizational Frontier
Key issues in making and using satellite-based maps in ecology: A primer
Internet encyclopaedias go head to head
Dynamic patterns of adaptive radiation
The Kindness of Strangers: The Usefulness of Electronic Weak Ties for Technical Advice
Modelling the recent common ancestry of all living humans
A generic type system for the Pi-calculus
Evolution and Growth in Large Libre Software Projects
Interpreting social science link analysis research: A theoretical framework
Experimental long-lived entanglement of two macroscopic objects
The Chicago Guide to Collaborative Ethnography (Chicago Guides to Writing, Editing, and Publishing)
Hybrid Type Checking
Modular Set-Based Analysis from Contracts
GROMACS: Fast, flexible, and free
Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology.
Thought and Language - Revised Edition
A method for including protein flexibility in protein-ligand docking: improving tools for database mining and virtual screening
Adaptive routing for intermittently connected mobile ad hoc networks
Using egocentric networks to understand communication
DTI mapping of human brain connectivity: statistical fibre tracking and virtual dissection.
Anisotropy of fluctuation dynamics of proteins with an elastic network model.
Multiple Alignment of protein structures and sequences for VMD.
Nonlinear multivariate analysis of neurophysiological signals
Cellphones in public: social interactions in a wireless era
New media and the 'pluralization' of life-worlds: A role for information in social differentiation
A corpus-based EAP course for NNS doctoral students: Moving from available specialized corpora to self-compiled corpora
Matching as Nonparametric Preprocessing for Reducing Model Dependence in Parametric Causal Inference
The maximal affinity of ligands.
An embedded domain-specific language for type-safe server-side web scripting
Design and evaluation of a metropolitan area multitier wireless ad hoc network architecture
Coding of border ownership in monkey visual cortex.
Sources of the Self: The Making of the Modern Identity
Modern Social Imaginaries (Public Planet)
Emotion and Cognition: Insights from Studies of the Human Amygdala
Quantum Field Theory
Dynamic Bayesian network and nonparametric regression for nonlinear modeling of gene networks from time series gene expression data.
Clustering of low-energy conformations near the native structures of small proteins.
The Pragmatic Roots of Context
Context and Relevance: A Pragmatic Approach
An Ontology for Mobile Device Sensor-Based Context Awareness
Formalizing Context (Expanded Notes)
A Mathematical Model for Context and Word-Meaning
Quantum information and computation
Space and attention in parietal cortex.
Development of human protein reference database as an initial platform for approaching systems biology in humans.
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
CORTICAL PLASTICITY: From Synapses to Maps
New Approaches to Robotics
MECHANISMS OF ALTERNATIVE PRE-MESSENGER RNA SPLICING
Population growth and collapse in a multiagent model of the Kayenta Anasazi in Long House Valley
Agent-based modeling: Methods and techniques for simulating human systems
Modeling civil violence: An agent-based computational approach
A Unifying Reference Framework for multi-target user interfaces
Effects of Configuration Interaction on Intensities and Phase Shifts
Social Networks for Creative Collaboration
Intel Virtualization Technology
The Architecture of Virtual Machines
Virtual Machine Monitors: Current Technology and Future Trends
Unmodified Device Driver Reuse and Improved System Dependability via Virtual Machines
Disco: running commodity operating systems on scalable multiprocessors
Which gene did you mean?
Finding genomic ontology terms in text using evidence content.
Discrete Differential-Geometry Operators for Triangulated 2-Manifolds
Information-based clustering
Neural network processing of natural language: I. Sensitivity to serial, temporal and abstract structure of language in the infant
Teaching Bayesian reasoning in less than two hours.
Early lexical development in a self-organizing neural network
Simulations and the Future of Learning: An Innovative (and Perhaps Revolutionary) Approach to e-Learning
Toys, Games, and Media
Analysis of covariation in an SH3 domain sequence alignment: applications in tertiary contact prediction and the design of compensating hydrophobic core substitutions.
The evolutionary language game
Genetic analysis of genome-wide variation in human gene expression.
What does the photoblog want?
Comparison of broadcasting techniques for mobile ad hoc networks
Scalable Techniques for Clustering the Web
Undoing Gender
Cognitive neuroscience of emotional memory.
Microarray data analysis: from disarray to consolidation and consensus
The epigenetic progenitor origin of human cancer.
The eloquent ape: genes, brains and the evolution of language
Grid Computing: Making The Global Infrastructure a Reality
MV routing and capacity building in disruption tolerant networks
A survey on position-based routing in mobile ad hoc networks
Daffodil - Strategic support for user-oriented access to heterogeneous digital libraries
Design Patterns for Reconfigurable Computing
Who's your neighbor? New computational approaches for functional genomics
Cloning the soil metagenome: a strategy for accessing the genetic and functional diversity of uncultured microorganisms.
Gamma-band synchronization in visual cortex predicts speed of change detection
Origins of extrinsic variability in eukaryotic gene expression
A gene-expression signature as a predictor of survival in breast cancer.
Learning, Bottlenecks and the Evolution of Recursive Syntax
Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes.
A common mechanism underlying promiscuous inhibitors from virtual and high-throughput screening.
Model selection and estimation in regression with grouped variables
Understanding emotions in others: mirror neuron dysfunction in children with autism spectrum disorders
On the limited memory BFGS method for large scale optimization
Parallel Computing Works!
Building Online Communities With Drupal, phpBB, and WordPress
Molecular dynamics simulation of a phosphatidylglycerol membrane
Scalable molecular dynamics with NAMD.
Contextual and cultural challenges for user mobility research
Less cyber, more cafÃ©: Enhancing existing small businesses across the digital divide with ICTs
Dependence language model for information retrieval
Weaving the Web: The Original Design and Ultimate Destiny of the World Wide Web
Extracting Product Features and Opinions from Reviews
Extracting Relations with Integrated Information Using Kernel Methods
Fixed Point Calculus
Common deletion polymorphisms in the human genome
Common deletions and SNPs are in linkage disequilibrium in the human genome
A high-resolution survey of deletion polymorphism in the human genome.
Integrating AJAX Approach into GIS Visualization Web Services
Snowball: Extracting Relations from Large Plain-Text Collections
From context to content: leveraging context to infer media metadata
User Context Aware Delivery of E-Learning Material: Approach and Architecture
BioContrasts: extracting and exploiting protein-protein contrastive relations from biomedical literature.
Expression of Arabidopsis MIRNA genes.
Learning words from sights and sounds: a computational model
Non-white noise in fMRI: does modelling have an impact?
A General Statistical Analysis for fMRI Data
Extracting Patterns and Relations from the World Wide Web
User experiencea research agenda
EEGLAB: an open source toolbox for analysis of single-trial EEG dynamics including independent component analysis.
Automatic labeling of semantic roles
Digital Game-Based Learning
Web search behavior of Internet experts and newbies
Rich interaction in the digital library
Web Document Clustering: A Feasibility Demonstration
A taxonomy of web search
Treadmill training of paraplegic patients using a robotic orthosis
Research on Web search behavior
Bayesian curve-fitting with free-knot splines
Bootstrap {M}ethods: {A}nother {L}ook at the {J}ackknife
Sampling-{B}ased {A}pproaches to {C}alculating {M}arginal {D}ensities
Theory of {P}robability
Monte {C}arlo {S}trategies in {S}cientific {C}omputing
Annealed importance sampling
Slice sampling
The {C}alculation of {P}osterior {D}istributions by {D}ata {A}ugmentation
Automated De Novo Identification of Repeat Sequence Families in Sequenced Genomes
SCOPPI: a structural classification of protein-protein interfaces
From genomics to chemical genomics: new developments in KEGG.
Arrows, robots, and functional reactive programming
Constructing transcriptional regulatory networks
BioThesaurus: a web-based thesaurus of protein and gene names.
The End of Poverty: Economic Possibilities for Our Time
Large-scale structure of genomic methylation patterns
GoPubMed: exploring PubMed with the Gene Ontology
The Extended Case Method
LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA.
Object-Level Ranking: Bringing Order to Web Objects
A walk in the noncommutative garden
Global landscape of recent inferred Darwinian selection for Homo sapiens.
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets.
MicroRNA gene expression deregulation in human breast cancer.
Profiling internet backbone traffic: behavior models and applications
A Modern Course in Statistical Physics
Metacognition in computation: A selected research review
{The RNA Polymerase II Core Promoter}
{Clustering of DNA Sequences in Human Promoters}
DBD: a transcription factor prediction database.
TRANSFACÃ‚Â® and its module TRANSCompelÃ‚Â®: transcriptional gene regulation in eukaryotes
Toucan: deciphering the cis-regulatory logic of coregulated genes.
Interference-Aware IEEE 802.16 WiMax Mesh Networks
The Knowledge-Creating Company: How Japanese Companies Create the Dynamics of Innovation
Uncovering evolutionary patterns of gene expression using microarrays
Prediction of cis-regulatory elements using binding site matrices--the successes, the failures and the reasons for both.
CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis
Intelligent client for integrating bioinformatics services
Time to Organize the Bioinformatics Resourceome
A new generation of JASPAR, the open-access repository for transcription factor binding site profiles.
BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems.
DrugBank: a comprehensive resource for in silico drug discovery and exploration.
The UCSC Genome Browser Database: update 2006.
TreeFam: a curated database of phylogenetic trees of animal gene families.
BioGRID: a general repository for interaction datasets.
Pathguide: a pathway resource list.
FlyBase: anatomical data, images and queries.
The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae.
MPact: the MIPS protein interaction resource on yeast.
Human protein reference database--2006 update.
RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions.
OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups.
The Gene Ontology (GO) project in 2006.
The RCSB PDB information portal for structural genomics.
Gene3D: modelling protein structure, function and evolution.
Pfam: clans, web tools and services.
The PROSITE database.
The Universal Protein Resource (UniProt): an expanding universe of protein information.
miRBase: microRNA sequences, targets and gene nomenclature.
PAJEK Program for Large Network Analysis
HomoMINT: an inferred human network based on orthology mapping of protein interactions discovered in model organisms.
PSE: A tool for browsing a large amount of MEDLINE/PubMed abstracts with gene names and common words as the keywords
Kalign - an accurate and fast multiple sequence alignment algorithm
Genome-Wide Associations of Gene Expression Variation in Humans
Ontology Matching
SLIM: an alternative Web interface for MEDLINE/PubMed searches - a preliminary study.
Molecular Interaction Maps of Bioregulatory Networks: A General Rubric for Systems Biology.
Galaxy: A platform for interactive large-scale genome analysis
Perspectives on Human Genetic Variation from the HapMap Project
SNPdetector: A Software Tool for Sensitive and Accurate SNP Detection
Flink: Semantic Web Technology for the Extraction and Analysis of Social Networks
Self Organization of a Massive Document Collection
Evolution of document networks
Finding scientific topics
Coauthorship networks and patterns of scientific collaboration
Extracting knowledge from the World Wide Web
The Sequence Ontology: a tool for the unification of genome annotations
The Tree of Life Web Project
Squid - a simple bioinformatics grid
Shape Priors for Level Set Representations
Rhythmic auditory stimulation in gait training for Parkinson's disease patients
A framework for mesencephalic dopamine systems based on predictive Hebbian learning
An introduction to Pound--Drever--Hall laser frequency stabilization
Basal ganglia and cerebellar loops: motor and cognitive circuits
State of Exception
Analyzing and Visualizing the Semantic Coverage of Wikipedia and Its Authors
The Meaning of Einstein's Equation
Enterprise Knowledge Management and Emerging Technologies
You Are Who You Talk To: Detecting Roles in Usenet Newsgroups
Profiles as Conversation: Networked Identity Performance on Friendster
Scaling metabolism from organisms to ecosystems.
What makes a gene name? Named entity recognition in the biomedical literature
Evaluation of biomedical text-mining systems: Lessons learned from information retrieval
Diversity and dynamics of dendritic signaling.
Empirical Analysis of an Evolving Social Network
Where do educational technologists really publish? An examination of successful emerging scholars' publication outlets
Against simulation: the argument from error.
Understanding other minds: linking developmental psychology and functional neuroimaging.
COGNITIVE DEVELOPMENT: Children's Knowledge About the Mind
Two reasons to abandon the false belief task as a test of theory of mind.
Vygotsky and the Social Formation of Mind
Mind As Action
Autopoiesis and Cognition : The Realization of the Living (Boston Studies in the Philosophy of Science)
Steps to an Ecology of Mind: Collected Essays in Anthropology, Psychiatry, Evolution, and Epistemology
Maximum likelihood estimation of cascade point-process neural encoding models
Dilemmas in a general theory of planning
Fast Readout of Object Identity from Macaque Inferior Temporal Cortex
Land use and vegetation fires in Jambi Province, Sumatra, Indonesia
The Influence of Incentives and Culture on Knowledge Sharing
Designing argumentation for conceptual development
The origins of eukaryotic gene structure.
On the dynamics of small continuous-time recurrent neural networks
A simplified representation of protein conformations for rapid simulation of protein folding.
Evaluating Retrieval Performance Using Clickthrough Data
Improving Automatic Query Expansion
Automatic assessment of alignment quality.
A genotype calling algorithm for affymetrix SNP arrays.
The Web of Life : A New Scientific Understanding of Living Systems
Particle filters for positioning, navigation, and tracking
Ecosystem Service Supply and Vulnerability to Global Change in Europe
Pattern-Oriented Modeling of Agent-Based Complex Systems: Lessons from Ecology
Nucleus accumbens neurons are innately tuned for rewarding and aversive taste stimuli, encode their predictors, and are linked to motor output.
Playing and Making Games for Learning: Instructionist and Constructionist Perspectives for Game Studies
The History and Meaning of the Journal Impact Factor
Object recognition from local scale-invariant features
Irrelevant features and the subset selection problem
Fast learning in networks of locally-tuned processing units.
Auto-Association by Multilayer Perceptrons and Singular Value Decomposition
Multivariate Analysis
Efficient Time Series Matching by Wavelets
An Introduction to Wavelets
Contradicted and initially stronger effects in highly cited clinical research.
Ascertainment bias in studies of human genome-wide polymorphism
Exploration of the function and organization of the yeast early secretory pathway through an epistatic miniarray profile.
"Automatic ""pipeline"" analysis of 3-D MRI data for clinical trials: application to multiple sclerosis"
Incremental and Decremental Support Vector Machine Learning
An information-theoretic perspective of tfâ€“idf measures
Building a Large Annotated Corpus of English: The Penn Treebank
A simple physical model for scaling in protein-protein interaction networks.
Creation and implications of a phenome-genome network.
Toward computational systems biology.
Illuminating drug discovery with biological pathways.
A Theory of Universal Artificial Intelligence based on Algorithmic Complexity
Correlated Topic Models
Securing web application code by static analysis and runtime protection
A semiconductor source of triggered entangled photon pairs
Making Distance Education Work: Understanding Learning And Learners at a Distance
Social networks and the study of relations: networks as method, metaphor and form
Enforcement of Temporal Fidelity in Pyramidal Cells by Somatic Feed-Forward Inhibition
Investigation of {BOLD} signal dependence on cerebral blood flow and oxygen consumption: the deoxyhemoglobin dilution model.
The neural basis of functional brain imaging signals.
Building efficient and effective metasearch engines
Handbook of MRI Pulse Sequences
MRI from Picture to Proton
Search in Peer-to-Peer File-Sharing System:
Fully Automatic Wrapper Generation For Search Engines
World Wide Web Search Technologies
Structured databases on the web: Observations and implications
Personalized and Focused Web Spiders
Architecture of a Metasearch Engine that Supports User Information Needs
Content-based book recommending using learning for text categorization
DEADLINER: Building a New Niche Search Engine
Mixed-membership models of scientific publications
The self-organizing map
Aramis, or the Love of Technology
Application of Phylogenetic Networks in Evolutionary Studies
Complexities: Social Studies of Knowledge Practices (Science and Cultural Theory)
Transactional memory coherence and consistency
Genome-wide prediction of mammalian enhancers based on analysis of transcription-factor binding affinity.
The endocrine regulation of aging by insulin-like signals.
Machine Learning for Science: State of the Art and Future Prospects
Structural basis for double-stranded RNA processing by Dicer.
Unsupervised Learning of Image Manifolds by Semidefinite Programming
An algorithm for vector quantizer design
Hierarchical grouping to optimize an objective function
Deterministic annealing for clustering, compression, classification, regression, and related optimization problems
Stochastic Processes in Physics and Chemistry
A temporal comparison of BOLD, ASL, and NIRS hemodynamic responses to motor stimuli in adult humans.
Synaptic Protein Synthesis Associated with Memory Is Regulated by the RISC Pathway in Drosophila
Essential genes of a minimal bacterium.
The design of transcription-factor binding sites is affected by combinatorial regulation
Reconstructing large regions of an ancestral mammalian genome in silico.
The Education of Man
Emile: Or, On Education
Democracy and Education
Self-organization in communication networks: principles and design paradigms
Knowledge Networks: Explaining Effective Knowledge Sharing in Multiunit Companies
Computer supported cooperative work
Domain-specific language models and lexicons for tagging
The use of receiver operating characteristic curves in biomedical informatics.
Measuring CPU Overhead for I/O Processing in the Xen Virtual Machine Monitor
Proofs from THE BOOK
Applicative Programming with Effects
Object Perception as Bayesian Inference
Edge co-occurrence in natural images predicts contour grouping performance.
Whole-cell simulation: a grand challenge of the 21st century.
Interpreter of Maladies
Automated extraction of mutation data from the literature: application of MuteXt to G protein-coupled receptors and nuclear hormone receptors.
Automated extraction of information on protein-protein  interactions from the biological literature
PubFinder: a tool for improving retrieval rate of relevant PubMed abstracts.
What Is Web 2.0: Design Patterns and Business Models for the Next Generation of Software
Correctness of belief propagation in Gaussian graphical models of arbitrary topology.
Signal-dependent noise determines motor planning
Hierarchical Bayesian inference in the visual cortex.
Information extraction from research papers using conditional random fields
Measures of degeneracy and redundancy in biological networks
{Random Waypoint Considered Harmful}
Neural Systems Responding to Degrees of Uncertainty in Human Decision-Making
Animal evolution and the molecular signature of radiations compressed in time.
Evolutionary changes in cis and trans gene regulation
Transcriptional regulatory code of a eukaryotic genome
Heart Rate Variability : Standards of Measurement, Physiological Interpretation, and Clinical Use
Microfluidics: Fluid physics at the nanoliter scale
Language evolution: consensus and controversies.
Dynamics of Complex Systems
Agent-based modeling vs. equation-based modeling: A case study and users ' guide
A brief history of stigmergy
Rapid evolution of noncoding RNAs: lack of conservation does not mean lack of function
Eukaryotic Regulatory Element Conservation Analysis and Identification Using Comparative Genomics
Online Passive-Aggressive Algorithms
Language identification in the limit
Tutorial on Practical Prediction Theory for Classification
Drosophila melanogaster: A case study of a model genomic sequence and its consequences
Affect: from information to interaction
Strangers to Ourselves : Discovering the Adaptive Unconscious
Beyond Modularity: A Developmental Perspective on Cognitive Science
Methods and Techniques of Complex Systems Science: An Overview
Topic-Sensitive PageRank: A Context-Sensitive Ranking Algorithm for Web Search
Matchmaking: Distributed Resource Management for High Throughput Computing
Learning to estimate query difficulty: including applications to missing content detection and distributed information retrieval
On the Emergence of Social Conventions: Modeling, Analysis, and Simulations
The Question Concerning Technology, and Other Essays
The interdisciplinary study of coordination
Bidirectional activity-dependent plasticity at corticostriatal synapses.
Microbial biogeography: putting microorganisms on the map
Modelling the dynamics of language death
Genome-scale evidence of the nematode-arthropod clade
Navigation-related structural change in the hippocampi of taxi drivers
k-Anonymity: A Model for Protecting Privacy
Unskilled and Unaware of It: How Difficulties in Recognizing One's Own Incompetence Lead to Inflated Self-Assessments
Dynamic Programming
Fast and Robust Fixed-Point Algorithms for Independent Component Analysis
Uses and abuses of mathematics in biology
Estimating the Support of a High-Dimensional Distribution
New Support Vector Algorithms
Better decisions through science
Chance caught on the wing: cis-regulatory evolution and the origin of pigment patterns in Drosophila 
Universality and complexity in cellular automata
Datatype-Generic Programming
TileBars: visualization of term distribution information in full text information access
Computer Networks
Design by Contract: {T}he Lessons of {A}riane
Seven More Myths of Formal Methods
Folksonomies: Tidying up Tags?
Software Aging
{N Degrees} of separation: multi-dimensional separation of concerns
Automated Negotiation: Prospects, Methods and Challenges
TROPOS: an agent-oriented software development methodology
Survey of Clustering Algorithms
An Empirical Comparison of Seven Programming Languages
Learning Algorithms for Keyphrase Extraction
Toward Distributed Service Discovery in Pervasive Computing Environments
A new test set for validating predictions of protein-ligand interaction.
Digital genetics: unravelling the genetic basis of evolution.
Towards multidimensional genome annotation
Literature mining for the biologist: from information retrieval to biological discovery
Structural variation in the human genome
An architecture for more realistic conversational systems
Refactoring Browser for UML
The Human Condition
The Price of Stability for Network Design with Fair Cost Allocation
Understanding quantitative genetic variation
The modern theory of biological evolution: an expanded synthesis
Web Usage Mining as a Tool for Personalization: A Survey
Using Language
ARIS: An interface for application relocation in an interactive space.
A diary study of task switching and interruptions
Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation
Can a Biologist Fix a Radio? â€” or, What I Learned while Studying Apoptosis
Learning the Structure of Dynamic Probabilistic Networks
Empathic neural responses are modulated by the perceived fairness of others.
A brain-specific microRNA regulates dendritic spine development
Ethnopsychologies: Cultural Variations in Theories of Mind,
Markov Chain Monte Carlo in Practice: Interdisciplinary Statistics (Chapman & Hall/CRC Interdisciplinary Statistics)
Markov Random Fields with Efficient Approximations
Ecosystem consequences of bird declines.
A Logical Framework for Querying and Repairing Inconsistent Databases
Executable object modeling with statecharts
Organizational memory: processes, boundary objects, and trajectories
Subnets of scale-free networks are not scale-free: Sampling properties of networks
COMPUTER NETWORKS AS SOCIAL NETWORKS: Collaborative Work, Telework, and Virtual Community
Memory systems of the brain: A brief history and current perspective
Comparative experiments on learning information extractors for proteins and their interactions
Summarization from medical documents: a survey.
Algebraic topology
Innate immune recognition of viral infection
Increasing participation in online communities: A framework for human-computer interaction
Categorified Algebra and Quantum Mechanics
Unsupervised pattern recognition: An introduction to the whys and wherefores of clustering microarray data
{A Survey on Context-aware systems}
{Adding Generic Contextual Capabilities to Wearable Computers}
{Inferring high-level behavior from low-level sensors}
{ContextPhone: a prototyping platform for context-aware mobile applications}
Guidelines for using human event-related potentials to study cognition: recording standards and publication criteria.
Visualization of test information to assist fault localization
The Mirror-Neuron System.
Reducing the computational complexity of protein folding via fragment folding and assembly.
Self-organising software architectures for distributed systems
Novel Procedure for Modeling Ligand/Receptor Induced Fit Effects
FastMap: A Fast Algorithm for Indexing, Data-Mining and Visualization of Traditional and Multimedia Datasets
A Simple Algorithm for Nearest Neighbor Search in High Dimensions
Between MDPs and semi-MDPs: A Framework for Temporal Abstraction in Reinforcement Learning
Interactome: gateway into systems biology.
People, places, things: web presence for the real world
Digital Communications
Ordinary Differential Equations
The Mathematics of Infectious Diseases
Mathematical Biology I: An Introduction
Spread of Epidemic Disease on Networks
Scientific data management in the coming decade
Molecular dynamics simulations at constant pressure and/or temperature
Generalized born models of macromolecular solvation effects.
Molecular dynamics with coupling to an external bath
Heterogeneity and inaccuracy in protein structures solved by x-ray crystallography.
The {I}kappa{B}-{NF}-kappa{B} signaling module: temporal control and selective gene activation.
Canonical dynamics: Equilibrium phase-space distributions
The roles of {APC} and {A}xin derived from experimental and theoretical analysis of the {W}nt pathway.
The yeast cell-cycle network is robustly designed.
Parameter estimation in biochemical pathways: a comparison of global optimization methods.
Can yeast glycolysis be understood in terms of in vitro kinetics of the constituent enzymes? {T}esting biochemistry.
Random sample consensus: a paradigm for model fitting with applications to image analysis and automated cartography
Learning and sequential decision making
Blobworld: A System for Region-Based Image Indexing and Retrieval
The Bayesian Image Retrieval System, {P}ic{H}unter: Theory, Implementation and Psychophysical Experiments
Query by image and video content: the qbic system
Social matching: A framework and research agenda
The Ecological Approach To Visual Perception
A survey of self-management in dynamic software architecture specifications
Proteome survey reveals modularity of the yeast cell machinery.
Basic Category Theory for Computer Scientists (Foundations of Computing)
The Impact of Structural Genomics: Expectations and Outcomes
Unraveling the Taste Fabric of Social Networks
Neutral Theory and Relative Species Abundance in Ecology
Memory Resource Management in VMware ESX Server
A Taxonomy of Mixed Reality Visual Displays
Large margin rank boundaries for ordinal regression
Constructionism in Practice: Designing, Thinking, and Learning in A Digital World
Citation Analysis in Research Evaluation
Design-Based Research: An Emerging Paradigm for Educational Inquiry
Sharing features: efficient boosting procedures for multiclass object detection
On the Science of Education Design Studies
Darwin's dangerous idea :evolution and the meanings of life
Adaptation and the cost of complexity.
The Population Genetics of Adaptation: The Distribution of Factors Fixed during Adaptive Evolution
Scientific Reasoning: The Bayesian Approach
An integrative theory of prefrontal cortex function.
Design-Based Research: Putting a Stake in the Ground
Design Experiments: Theoretical and Methodological Challenges in Creating Complex Interventions in Classroom Settings
Ontological Innovation and the Role of Theory in Design Experiments
Hierarchical multi-label prediction of gene function.
A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations.
Finite topology as applied to image analysis
GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data.
Mining MEDLINE: abstracts, sentences, or phrases?
Searching to eliminate personal information management
Digital memories in an era of ubiquitous computing and abundant storage
LLVM: A Compilation Framework for Lifelong Program Analysis \& Transformation
Structural Evolution of the Protein Kinaseâ€“Like Superfamily
Computers are social actors
Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods.
Maximum entropy modeling of species geographic distributions
The Construction of Mathematical Meanings: Connecting the Visual with the Symbolic
Decentralized Trust Management
A survey of trust and reputation systems for online service provision
Analysing the Relationship between Risk and Trust
A framework and methodology for studying the causes of software errors in programming systems
The functional landscape of mouse gene expression
Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis.
Untangling text data mining
Typed Contracts for Functional Programming
A review of protein-small molecule docking methods.
Evaluation of docking performance: comparative data on docking algorithms.
Structural Interaction Fingerprint (SIFt):â€‰ A Novel Method for Analyzing Three-Dimensional Proteinâˆ’Ligand Binding Interactions
Structure-based virtual screening: an overview.
Characterizing user behavior and network performance in a public wireless LAN
Multimedia Annotations on the Semantic Web
Counterexample-guided abstraction refinement for symbolic model checking
Coupling dynamic models of climate and vegetation
Why Trees Migrate So Fast: Confronting Theory with Dispersal Biology and the Paleorecord
The Organization of Information : Second Edition (Library and Information Science Text Series)
Information revelation and privacy in online social networks
Automatic Extraction of Object-Oriented Component Interfaces
An improved approach for predicting the distribution of rare and endangered species from occurrence and pseudo-absence data
Predicting the impacts of climate change on the distribution of species: are bioclimate envelope models useful?
Grasping the intentions of others with one's own mirror neuron system.
Support vector machines
E-portfolios: an assessment tool for online courses
Lifelong learning and second-order learning objects
The scaling laws of human travel
Objective criteria for the evaluation of clustering methods
Comparing partitions
Complex networks: Structure and dynamics
Efficient Path Profiling
Global Biodiversity Scenarios for the Year 2100
Potential Changes in Tree Species Richness and Forest Community Types following Climate Change
"Revisiting ""scale-free"" networks."
Team Assembly Mechanisms Determine Collaboration Network Structure and Team Performance
Open Sources 2.0 : The Continuing Evolution
Shared leadership in the Apache project
Self-Organization in a Perceptual Network
When Can we Call a System Self-organizing?
Computing communities in large networks using random walks
Ecological responses to recent climate change
Global Change and the Boreal Forest: Thresholds, Shifting States or Gradual Change?
Basal Ganglia orient eyes to reward.
Defining the sequence-recognition profile of DNA-binding molecules
Human Motion Analysis: a review.
Activity in prefrontal cortex during dynamic selection of action sequences.
System architecture directions for networked sensors
The generic genome browser: a building block for a model organism system database.
The evolution of language
Evolving Grounded Communication for Robots
Constructing a Language: A Usage-Based Theory of Language Acquisition
Exact and Approximate Arithmetic in an Amazonian Indigene Group
Mining data streams: a review
Experimental approaches to identify non-coding RNAs.
Incorporating Fairness into Game Theory and Economics
Community Genomics Among Stratified Microbial Assemblages in the Ocean's Interior
Towards culture-centred design
Weblogs: Eine kommunikationssoziologische Studie
Optimizing the Migration of Virtual Computers
Electronic Groups at Work
A Typology of Virtual Teams: Implications for Effective Leadership
Web Caching and Zipf-like Distributions: Evidence and Implications
Helix to helix packing in proteins.
RNA meets chromatin
Conserved noncoding sequences are selectively constrained and not mutation cold spots
A formal study of information retrieval heuristics
A Markov Random Field Model for Term Dependencies
Relevance Weighting for Query Independent Evidence
The Evaluator Effect: A Chilling Fact about Usability Evaluation Methods
A Study of Smoothing Methods for Language Models Applied to Ad Hoc Information Retrieval
The Cognitive Basis of Science
A comparison of document clustering techniques
Genome-wide identification of human functional DNA using a neutral indel model.
Misconceptions or P-Prims: How May Alternative Perspectives of Cognitive Structure Influence Instructional Perceptions and Intentions?
Discovering semantic features in the literature: a foundation for building functional associations
Collaborative tagging as a tripartite network
The DSpace institutional digital repository system: current functionality
Conformational Diversity of Ligands Bound to Proteins
Web-a-where: geotagging web content
The case of the disappearing teaspoons: longitudinal cohort study of the displacement of teaspoons in an Australian research institute
Rho GTPases: biochemistry and biology.
Computational design of a single amino acid sequence that can switch between two distinct protein folds.
Intention is choice with commitment
Video games in education
Towards an Ontological Language for Game Analysis
Systems biology: The reincarnation of systems theory applied in biology?
Spatial autocorrelation in multi-scale land use models
Spatial Autocorrelation: Trouble or New Paradigm?
How open source software works: ''free'' user--to--user assistance
Network Flows: Theory, Algorithms, and Applications
Optical Properties of Photonic Crystals
Participatory Design: The Third Space in HCI
An Introduction to General Systems Thinking
A Global Map of p53 Transcription-Factor Binding Sites in the Human Genome
'Economic Man' in cross-cultural perspective: Behavioral experiments in 15 small-scale societies
{Band parameters for III-V compound semiconductors and their alloys}
Quantum Mechanics
{Introduction to Solid State Physics}
Using Filtering Agents to Improve Prediction Quality in the GroupLens Research Collaborative Filtering System
Automatic extraction of biological information from scientific text: protein-protein interactions.
The Path Forward for Biofuels and Biomaterials
On Kernel-Target Alignment.
Bayesian Networks and Decision Graphs (Information Science and Statistics)
Avoiding Dangerous Climate Change
Lead- and drug-like compounds: the rule-of-five revolution
Globus Toolkit Version 4: Software for Service-Oriented Systems
A smooth particle mesh Ewald method
Mass-Produced Software Components
Embedded-atom method: Derivation and application to impurities, surfaces, and other defects in metals
Molecular analysis of the bacterial microbiota in the human stomach
Unified Approach for Molecular Dynamics and Density-Functional Theory
Reaction-rate theory: fifty years after Kramers
A Bayesian Truth Serum for Subjective Data
Using statistical and knowledge-based approaches for literature-based discovery
A Practical Guide to Wavelet Analysis
Comparison of Hilbert transform and wavelet methods for the analysis of neuronal synchrony.
A higher-order background model improves the detection of  promoter regulatory elements by Gibbs sampling
Gene network shaping of inherent noise spectra.
Finding others online: reputation systems for social online spaces
Architecture and Algorithms for a Distributed Reputation System
Dissociable Roles of Ventral and Dorsal Striatum in Instrumental Conditioning
'Protein Peeling': an approach for splitting a 3D protein structure into compact fragments
A {S}yntactic {T}heory of {D}ynamic {B}inding
Similarities and differences in genome-wide expression data of six organisms.
An architecture for next generation middleware
The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling.
Detecting Subtle Sequence Signals: A Gibbs Sampling Strategy for Multiple Alignment
Detecting Spam Web Pages through Content Analysis
Coming of age with the internet: A qualitative exploration of how the internet has become an integral part of                 young people's lives
The Narrative Construction of Reality
An Analysis of the Skype Peer-to-Peer Internel Telephony Protocol
Exact algorithms for NP-hard problems: a survey
Feature-based recommendation system
Non-Cooperative Games
Discovery of regulatory elements by a computational method for phylogenetic footprinting.
Reconstruction of gene networks using Bayesian learning and manipulation experiments
Model-Driven Software Development: Technology, Engineering, Management
Evolution of cooperation without reciprocity
The ethnographic tradition and design
Multiscaling at Point J: Jamming is a Critical Phenomenon
Analyzing the past to prepare for the future: writing a literature review
Finding Communities in Linear Time: A Physics Approach
Social Structure and Competition in Interfirm Networks: The Paradox of Embeddedness
Ten Questions about Emergence
Cancer: A Systems Biology disease
Object Recognition as Machine Translation: Learning a Lexicon for a Fixed Image Vocabulary
SemTag and seeker: bootstrapping the semantic web via automated semantic annotation
{WordNet: An Electronic Lexical Database}
User Modeling in Human-Computer Interaction
Knowledge Sharing in Knowledge Communities
{ThemeRiver}: Visualizing Thematic Changes in Large Document Collections
{Semantic Similarity Based on Corpus Statistics and Lexical Taxonomy}
{Neural Networks}
Retrieval effectiveness of an ontology-based model for information selection
A Set of Principles for Conducting and Evaluating Interpretive Field Studies in Information Systems
An approach for measuring semantic similarity between words using multiple information sources
Digital Libraries and Autonomous Citation Indexing
A Brief Survey of Web Data Extraction Tools
Notes on the theory of the actor-network: Ordering, strategy and heterogeneity
Social Capital - A theory of social structure and action
Knowledge Management
Ontology Learning and Its Application to Automated Terminology Translation
Social Capital, Intellectual Capital, and the Organizational Advantage
The Competitive Advantage of Nations
{Ambient Intelligence}
REDfly: a Regulatory Element Database for Drosophila
Towards Narrative-Centered Learning Environments
Probabilistic Counting Algorithms for Data Base Applications
Intersubject Synchronization of Cortical Activity During Natural Vision.
The Domestication of the Savage Mind (Themes in the Social Sciences)
A large-scale neurocomputational model of task-oriented behavior selection and working memory in prefrontal cortex.
Numerical Recipes in Fortran 77: The Art of Scientific Computing
Secrets and Lies: Digital Security in a Networked World
Musical Genre Classification of Audio Signals
MicroRNAS and their regulatory roles in plants.
A bookmarking service for organizing and sharing URLs
Finding local community structure in networks
Determining the Epipolar Geometry and its Uncertainty: A Review
Attention and the detection of signals
Identification and analysis of evolutionarily cohesive functional modules in protein networks.
White matter fiber tracts of the human brain: Three-dimensional mapping at microscopic resolution, topography and intersubject variability
The complexity of theorem-proving procedures
Game Design Workshop: Designing, Prototyping, and Playtesting Games
Genomics of microRNA
Thermodynamics of RNA-RNA Binding.
A biological approach to computational models of proteomic networks
Identification of large-scale networks in the brain using fMRI
Can cognitive processes be inferred from neuroimaging data?
Gravity-Induced Aging in Glasses of Colloidal Hard Spheres
Can we rationally design promiscuous drugs?
Mining coherent dense subgraphs across massive biological networks for functional discovery
Design Patterns from Biology for Distributed Computing
Gibbs Recursive Sampler: finding transcription factor binding sites.
The basal ganglia: learning new tricks and loving it.
Calibrating a coalescent simulation of human genome sequence variation
HotKnots: Heuristic prediction of RNA secondary structures including pseudoknots
Neural mechanisms of selective visual attention
Basic objects in natural categories
Objects and attention: the state of the art
Inferotemporal cortex and object vision
Feature binding, attention and object perception
Direct Experimental Evidence of a Growing Length Scale Accompanying the Glass Transition
The Art of Innovation : Lessons in Creativity from IDEO, America's Leading Design Firm
Multilayer feedforward networks are universal approximators
{L}aplacian Eigenmaps for Dimensionality Reduction and Data Representation
The Wake-Sleep Algorithm for Unsupervised Neural Networks
The spaces of actor-network theory
Programming Languages: Application and Interpretation
Modern Computer Algebra
van der Waals Volumes and Radii
Dynamics of pattern formation in lateral-inhibition type neural fields
Synaptic modifications in cultured hippocampal neurons: dependence on spike timing, synaptic strength, and postsynaptic cell type.
A synaptic model of memory: long-term potentiation in the hippocampus.
Emotion and motivation: the role of the amygdala, ventral striatum, and prefrontal cortex.
Reward, motivation, and reinforcement learning.
Learning and selective attention.
Reinforcement learning in continuous time and space
Graded persistent activity in entorhinal cortex neurons.
Biomimetic robot navigation
A computational model of action selection in the basal ganglia. II. Analysis and simulation of behaviour.
Dopamine neurons report an error in the temporal prediction of reward during learning.
Independent rate and temporal coding in hippocampal pyramidal cells.
An evaluation of the two-dimensional gabor filter model of simple receptive fields in cat striate cortex
Regulation of synaptic efficacy by coincidence of postsynaptic APs and EPSPs.
Redistribution of synaptic efficacy between neocortical pyramidal neurons.
The effects of changes in the environment on the spatial firing of hippocampal complex-spike cells
Spike-timing-dependent Hebbian plasticity as temporal difference learning.
Feature discovery by competitive learning
Neural population codes.
Experiments with reinforcement learning in problems with continuous state and action spaces
Replay of neuronal firing sequences in rat hippocampus during sleep following spatial experience
Generalization in Reinforcement Learning: Successful Examples Using Sparse Coarse Coding
Policy Gradient Methods for Reinforcement Learning with Function Approximation
Attractor dynamics in the hippocampal representation of the local environment.
Hippocampal neurons encode information about different types of memory episodes occurring in the same location.
Toward Evidence-Based Medical Statistics. 1: The P Value Fallacy
Toward evidence-based medical statistics. 2: The Bayes factor.
Exploring Knowledge Sharing in Virtual Teams: A Social Exchange Theory Perspective
Amino acid-base interactions: a three-dimensional analysis of protein-DNA interactions at an atomic level.
Statistical practice in high-throughput screening data analysis.
Recent advances in augmented reality
A Survey of Augmented Reality
Information visualization and its application to medicine
Historical contingency and the purported uniqueness of evolutionary innovations
ReVirt: enabling intrusion analysis through virtual-machine logging and replay
Mixed biodiversity benefits of agri-environment schemes in five European countries
Turbulence statistics in fully developed channel flow at low Reynolds number
Genome-Scale Identification of Nucleosome Positions in S. cerevisiae
Genome-wide map of nucleosome acetylation and methylation in yeast.
Global nucleosome occupancy in yeast.
No Magic Bullet: 3D Video Games in Education
A Genome-Wide Map of Conserved MicroRNA Targets in C. elegans.
A microRNA expression signature of human solid tumors defines cancer gene targets
Transposon-free regions in mammalian genomes.
Intrinsic and extrinsic contributions to stochasticity in gene expression
Stochastic Gene Expression in a Single Cell
Efficient discrimination of temporal patterns by motion-sensitive neurons in primate visual cortex.
Statistical methods for assessing agreement between two methods of clinical measurement
Genetic dissection of transcriptional regulation in budding yeast.
The landscape of genetic complexity across 5,700 gene expression traits in yeast
Characterization of single-nucleotide polymorphisms in coding regions of human genes.
Locally weighted regression: an approach to regression analysis by local fitting.
Intra- and interspecific variation in primate gene expression patterns
{The International HapMap Project}
Mapping mendelian factors underlying quantitative traits using RFLP linkage maps
{G}enetics and {A}nalysis of {Q}uantitative {T}raits
The regulatory content of intergenic DNA shapes genome architecture
Genetics of gene expression surveyed in maize, mouse and man
Normalization of cDNA microarray data
Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications
Trans-acting regulatory variation in Saccharomyces cerevisiae and the role of transcription factors.
The Human Genome Browser at UCSC
Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence.
The Internet in Everyday Life
Are wikis usable?
Work, friendship, and media use for information exchange in a networked organization
Beyond Edutainment Exploring the Educational Potential of Computer Games
ANF: a fast and scalable tool for data mining in massive graphs
A macroscope in the redwoods
Design and deployment of industrial sensor networks: experiences from a semiconductor plant and the north sea
Relevance Feedback and Personalization: A Language Modeling Perspective
The Probability Ranking Principle in IR
Language models for relevance feedback
Parsimonious language models for information retrieval
A theoretician's guide to the experimental analysis of algorithms
International Norm Dynamics and Political Change
Anarchy is what States Make of it: The Social Construction of Power Politics
Communication Patterns as Determinants of Organizational Identification in a Virtual Organization
The Web Impact Factor : a critical review
Can Conformational Change Be Described by Only a Few Normal Modes?
E-learning : strategies for delivering knowledge in the digital age
Communicating and Mobile Systems: the Pi-Calculus
The Organization of Behavior: A Neuropsychological Theory
ZDOCK: an initial-stage protein-docking algorithm.
Practical flow cytometry
MyLifeBits: a personal database for everything
Overview of the TREC-2001 Web Track
XIRQL: A query language for information retrieval in {XML} documents
Using language models for information retrieval
Document Language Models, Query Models, and Risk Minimization for Information Retrieval
A Study of Smoothing Methods for Language Models Applied to Information Retrieval
The importance of prior probabilities for entry page search
Is question answering an acquired skill?
Fusion via a linear combination of scores
Combination of multiple searches
Combining approaches to Information Retrieval
Models for metasearch
Analyses of multiple evidence combination
Modeling score distributions for combining the outputs of search engines
A Contribution to the Empirics of Economic Growth
From shoebox to performative agent: the computer as personal memory machine
Regulation of Gene Expression in Flux Balance Models of Metabolism
Dynamic flux balance analysis of diauxic growth in Escherichia coli.
Design studies for a financial management system for micro-credit groups in rural india
Comparison of Bayesian and maximum-likelihood inference of population genetic parameters.
Markov logic networks
Agent-organized networks for dynamic team formation
Pseudorandomness and Combinatorial Constructions
Interpreting the universal phylogenetic tree.
Global-scale patterns of forest fragmentation
Making the biodiversity monitoring system sustainable: Design issues for large-scale monitoring systems
Relevance: Communication and Cognition
Developing efficient search strategies to identify reports of adverse effects in MEDLINE and EMBASE.
CMfinder--a covariance model based RNA motif finding algorithm
Reverse replay of behavioural sequences in hippocampal place cells during the awake state
Hierarchical Subject Relationships in Folksonomies
Rapid ethnography: time deepening strategies for HCI field research
The price of free software: Labor, ethics, and context in distance education
Google Scholar : the new generation of citation indexes
A Wavelet Tour of Signal Processing, Second Edition (Wavelet Analysis & Its Applications)
Hints for computer system design
Self-Managing Systems: A Control Theory Foundation
Principles of Economics
Theory of Games and Economic Behavior
Existence of an equilibrium for a competitive economy
Globalization and Its Discontents
On the Impossibility of Informationally Efficient Markets
Autoregressive Conditional Heteroscedasticity with Estimates of the Variance of United Kingdom Inflation
A closed-form solution for options with stochastic volatility with applications to bond and currency options
Empirical properties of asset returns: stylized facts and statistical issues
Market Microstructure Theory
Allocative Efficiency of Markets with Zero-Intelligence Traders: Market as a Partial Substitute for Individual Rationality
Growing Artificial Societies: Social Science from the Bottom Up
The Complexity of Cooperation: Agentâ€”Based Models of Competition and Collaboration
Scaling and criticality in a stochastic multi-agent model of a financial market
Why Agents? On the Varied Motivations for Agent Computing in the Social Sciences
The Database of Interacting Proteins: 2004 update.
MINT: a Molecular INTeraction database
Evolutionary Conservation of Expression Profiles Between Human and Mouse Orthologous Genes
A Scaffolding Design Framework for Software to Support Science Inquiry
A Middleware for Context-Aware Agents in Ubiquitous Computing Environments
Automatic atom type and bond type perception in molecular mechanical calculations.
Random sampling with a reservoir
High-resolution haplotype structure in the human genome.
Adaptive phenotypic plasticity: consensus and controversy
Documents at Hand: Learning from Paper to Improve Digital Technologies
Toolkit Design for Interactive Structured Graphics
Channel noise in neurons
Cerebellum-Dependent Learning: The Role of Multiple Plasticity Mechanisms
Changing Places: Contexts of Awareness in Computing
Wiki communities in the context of work processes
Network Analysis, Culture, and the Problem of Agency
Repeated observation of breast tumor subtypes in independent gene expression data sets
Molecular portraits of human breast tumours
Diagnosis of multiple cancer types by shrunken centroids of gene expression
Principles for Digital Preservation
A Survey on PageRank Computing
Theory of cellular automata: A survey
Classical physics and the Church--Turing Thesis
One-Shot Learning of Object Categories
Children Creating Core Properties of Language: Evidence from an Emerging Sign Language in Nicaragua
The theta/gamma discrete phase code occuring during the hippocampal phase precession may be a more general brain coding scheme.
Summing up the noise in gene networks
Real-time kinetics of gene activity in individual bacteria.
Intensive insulin therapy in the medical ICU.
On/off blinking and switching behaviour of single molecules of green fluorescent protein
Online Selection of Discriminative Tracking Features
Fluorescence Spectroscopy of Single Biomolecules
The penultimate rotamer library.
Mechanisms of memory.
{T}he {CONSORT} statement: revised recommendations for improving the quality of reports of parallel-group randomized trials
GROMACS: A message-passing parallel molecular dynamics implementation
LINCS: a linear constraint solver for molecular simulations
TCP Performance Issues over Wireless Links
Exact stochastic simulation of coupled chemical reactions
Mathematical models of protein kinase signal transduction.
Linear Discriminant Model for Information Retrieval
Indexing and {R}etrieval of {S}cientific {L}iterature
Graph Clustering and Minimum Cut Trees
A bottom-up approach to gene regulation
The primate amygdala represents the positive and negative value of visual stimuli during learning.
Data unification in personal information management
Lazy abstraction
Self-efficacy: Toward a unifying theory of behavioral change.
Design Requirements for Technologies that Encourage Physical Activity
Breaking the Spell : Religion as a Natural Phenomenon
THE CIRCUITRY OF V1 AND V2: Integration of Color, Form, and Motion
Figure and ground in the visual cortex: v2 combines stereoscopic cues with gestalt rules.
Learning the invariance properties of complex cells from their responses to natural stimuli.
Cell-type-specific signatures of microRNAs on target mRNA expression.
Comparing Bayesian Network Classifiers
Categorical representation of visual stimuli in the primate prefrontal cortex
The role of similarity in categorization: providing a groundwork
Hearing lips and seeing voices
Modulation of connectivity in visual pathways by attention: cortical interactions evaluated with structural equation modelling and fMRI
Derivation of rules for comparative protein modeling from a database of protein structure alignments.
PDB file parser and structure class implemented in Python
A survey on the use of pattern recognition methods for abstraction, indexing and retrieval of images and video
The Druggable Genome
The Victorian Internet
Constructing free-energy approximations and generalized belief propagation algorithms
Complexity and robustness
Reconstructing Technologies As Social Practice
Combinatorial Optimization
Inductive learning algorithms and representations for text categorization
Causal reasoning in rats.
PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny.
Doing with Understanding: Lessons from Research on Problem- and Project-Based Learning
Problem Based Learning: An instructional model and its constructivist framework
Problem Solving as a Basis for Reform in Curriculum and Instruction: The Case of Mathematics
On Two Metaphors for Learning and the Dangers of Choosing Just One
Microfluidics---a review
Introduction to Quantum Mechanics
Generalized gradient approximation made simple
On Making the Right Choice: The Deliberation-Without-Attention Effect
A Niched {P}areto {G}enetic {A}lgorithm for {M}ultiobjective {O}ptimization
Reproductive Social Behavior: Cooperative Games to Replace Sexual Selection
BLINC: Multilevel Traffic Classification in the Dark
{Performance Debugging for Distributed Systems of Black Boxes}
Cognitive dimensions of notations
The devil and packet trace anonymization
Changes in the Velocity Structure of the Greenland Ice Sheet
Learning Eigenfunctions Links Spectral Embedding and Kernel PCA
The precuneus: a review of its functional anatomy and behavioural correlates
Copy number polymorphism in Fcgr3 predisposes to glomerulonephritis in rats and humans
Microarray technology: beyond transcript profiling and genotype analysis.
The Expansion of the Metazoan MicroRNA Repertoire.
What the Social Brain Sciences Can Tell Us About the Self
Relationships between taxonomic resolution and spatial scales of multivariate variation
Additive partitioning of species diversity across multiple spatial scales: Implications for regional conservation of biodiversity
Pseudoreplication and the design of ecological field experiments
Network thinking in ecology and evolution
Pollinators as mediators of top-down effects on plants
Landscape perspectives on agricultural intensification and biodiversity - ecosystem service management
Teaching Children to be Mathematicians vs. Teaching About Mathematics
Patterns and Trends of International Migration in Western Europe
Quantifying biodiversity: procedures and pitfalls in the measurement and comparison of species richness
A hybrid user model for news story classification
AntNet: Distributed Stigmergetic Control for Communications Networks
WebMate : A Personal Agent for Browsing and Searching
The {A}nt {S}ystem: {O}ptimization by a colony of cooperating agents
Let's Browse : A Collaborative Web Browsing Agent
Sequential Minimal Optimization: A Fast Algorithm for Training Support Vector Machines
Accessing Nearby Copies of Replicated Objects in a Distributed Environment
Missing Data
The three worlds of welfare capitalism
Functional Coverage of the Human Genome by Existing Structures, Structural Genomics Targets, and Homology Models
The emergence of social cognitive neuroscience.
The global transcriptional regulatory network for metabolism in Escherichia coli exhibits few dominant functional states
The evolution of speech: a comparative review.
Algebraic Quantum Field Theory
Network information flow
Calibrating Noise to Sensitivity in Private Data Analysis
Linear network coding
Using lexical chains for text summarization
Non-verbal Cues for Discourse Structure
Grounding in communication
A survey of socially interactive robots
Mirror Neurons and the Simulation Theory of Mind-Reading
The neural basis of human error processing: reinforcement learning, dopamine, and the error-related negativity.
SHARP: an architecture for secure resource peering
TAPping into argumentation: Developments in the application of Toulmin's Argument Pattern for studying science discourse
A Survey of Peer-to-Peer Security Issues
Anti De Sitter Space And Holography
A First Step towards Automated Detection of Buffer Overrun Vulnerabilities
A static analyzer for finding dynamic programming errors
The social dimensions of online learning
Gene expression predictors of breast cancer outcomes
Random-effects models for longitudinal data
Longitudinal data analysis using generalized linear models.
Lightweight probabilistic broadcast
Genomic scans for selective sweeps using SNP data.
The Quantum Theory of Optical Coherence
Adaptive evolution of transcription factor binding sites
Species Redundancy and Ecosystem Reliability
Comparison of phylogenetic trees
Study design in fMRI: Basic principles
Bugs as deviant behavior: a general approach to inferring errors in systems code
A text-mining analysis of the human phenome
MicroRNAs in cell proliferation, cell death, and tumorigenesis.
A new look at survey propagation and its generalizations
Measuring semantic similarity in the taxonomy of WordNet
Separate Neural Systems Value Immediate and Delayed Monetary Rewards
Second Language Listening: Listening Ability or Language Proficiency?
CiteSpace II: Detecting and visualizing emerging trends and transient patterns in scientific literature
Designed divergent evolution of enzyme function
Efficient auditory coding.
Adaptive filtering enhances information transmission in visual cortex.
Journal Status
Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential.
Evaluating personal information management behaviors and tools
A visual approach to proteomics.
Structural systems biology: modelling protein interactions
The model organism as a system: integrating 'omics' data sets
Cell-signalling dynamics in time and space
A Survey and Comparison of Peer-to-Peer Overlay Network Schemes
{OpenDHT: A Public DHT Service and Its Uses}
CoolStreaming/DONet: A Data-Driven Overlay Network For Peer-To-Peer Live Media Streaming
Unavailability of online supplementary scientific information from articles published in major journals
Cancer statistics, 2005
A new biology for a new century
A methodology for the structural and functional analysis of signaling and regulatory networks
Integrality gaps of semidefinite programs for Vertex Cover and relations to $\ell_1$ embeddability of Negative Type metrics
Complex Networks and Decentralized Search Algorithms
The Theory of Polymer Dynamics
Direct observation of kinesin stepping by optical trapping interferometry
Soft Lithography
Use of a {cDNA} microarray to analyse gene expression patterns in human cancer
The significance of digital gene expression profiles
Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome.
Learning and Teaching Styles in Engineering Education
From micro- to nanofabrication with soft materials.
{Correlation between protein and mRNA abundance in yeast}
{Complementary DNA sequencing: expressed sequence tags and human genome project}
{A system for stable expression of short interfering RNAs in mammalian cells}
{Functional tests of enhancer conservation between distantly related species}
The tempotron: a neuron that learns spike timingâ€“based decisions
An evaluation of GO annotation retrieval for BioCreAtIvE and GOA.
Genome-wide prediction and characterization of interactions between transcription factors in Saccharomyces cerevisiae.
Information seeking research needs extension towards tasks and technology
Comprehensive genome analysis of 203 genomes provides structural genomics with new insights into protein family space.
The researcher's dilemma: evaluating trust in computer-mediated communication
MicroRNAs direct rapid deadenylation of mRNA.
Semantic Integration and Retrieval of Multimedia Metadata
Ad hoc On-Demand Distance Vector (AODV) Routing
Opportunistic routing in multi-hop wireless networks
Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets.
Automatic web news extraction using tree edit distance
Experimental Study of Inequality and Unpredictability in an Artificial Cultural Market
Is cross-validation valid for small-sample microarray classification?
All are not equal: A benchmark of different homology modeling programs
Finger trees: a simple general-purpose data structure
Design Research: Theoretical and Methodological Issues
Psychology of Intelligence Analysis
Peer-to-Peer Membership Management for Gossip-Based Protocols
An evaluation of scalable application-level multicast built using peer-to-peer overlays
Mental models of the earth: A study of conceptual change in childhood
The Context of Work
BIRDSONG AND HUMAN SPEECH: Common Themes and Mechanisms
Conflict Monitoring and Cognitive Control
Situating Technoscience: an Inquiry into Spatialities
Mixing Humans and Nonhumans Together: The Sociology of a Door-Closer
Finite Fields
Genome annotation past, present, and future: How to define an ORF at each locus
ORegAnno: an open access database and curation system for literature-derived promoters, transcription factor binding sites and regulatory variation
BioShella package of tools for structural biology computations
GenomeDiagram: a python package for the visualization of large-scale genomic data
Browse and Search Patterns in a Digital Image Database
Social Foundations of Cognition
Ten Simple Rules for Getting Published
Real time quantitative PCR.
Similarity Measures, Author Cocitation Analysis, and Information Theory
Elucidation of the Small RNA Component of the Transcriptome
Computer Mediated Communication
Developmental robotics: a survey
MOLECULAR SIGNATURES OF NATURAL SELECTION
How Scientists Think in the Real World Implications for Science Education
Reversible jump Markov chain Monte Carlo computation and Bayesian model determination
Organization of the Caenorhabditis elegans small non-coding transcriptome: Genomic features, biogenesis, and expression.
Environmentally Controlled Invasion of Cancer Cells by Engineered Bacteria
ObjectRank: Authority-based keyword search in databases
DBXplorer: A System for Keyword-Based Search over Relational Databases
Simple Heuristics That Make Us Smart
Algorithmic theories of everything
Sparse Distributed Memory
An Introduction to Boosting and Leveraging
Greedy Function Approximation: A gradient boosting machine
Error bounds for convolutional codes and an asymptotically optimum decoding algorithm
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection.
Ontology-based retrieval of geographic information
Computer Support for Social Awareness in Flexible Work
Analysis of genomic context: prediction of functional associations from conserved bidirectionally transcribed gene pairs.
Dynamo: a public interactive surface supporting the cooperative sharing and exchange of media
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
A Bacterial Cell-Cycle Regulatory Network Operating in Time and Space
Spike count reliability and the Poisson hypothesis.
On schemes of combinatorial transcription logic
Preferential attachment in the growth of social networks: the case of Wikipedia
TAG: a Tiny AGgregation Service for Ad-Hoc Sensor Networks
Pandora's Hope: Essays on the Reality of Science Studies
The Social Construction of Facts and Artifacts: Or How the Sociology of Science and the Sociology of Technology Might Benefit Each Other
"""The Turn to Technology in Social Studies of Science"""
Combining phylogenetic data with co-regulated genes to identify regulatory motifs
Ab initio genotypeâ€“phenotype association reveals intrinsic modularity in genetic networks
The colorectal microRNAome.
Towards adaptive classification for BCI
Gene regulation by microRNAs.
Compression of Individual Sequences Via Variable-Rate Coding
Sexual reproduction selects for robustness and negative epistasis in artificial gene networks.
Applied Conformal Field Theory
Co-evolutionary analysis reveals insights into protein-protein interactions.
Timed Automata.
The UCSC Known Genes.
Enzymes with extra talents: moonlighting functions and catalytic promiscuity.
Pushing the Envelope: Planning, Propositional Logic, and Stochastic Search
A Bayesian Computer Vision System for Modeling Human Interactions
Background subtraction techniques: a review
Spatial interaction and the statistical analysis of lattice systems
Toward a More Robust Theory and Measure of Social Presence: Review and Suggested Criteria
Ten Simple Rules for Getting Grants
Toward Automatic Reconstruction of a Highly Resolved Tree of Life
Pattern-Oriented Software Architecture Volume 2: Patterns for Concurrent and Networked Objects
[Evolution of MIR-repeats in coding regions of the human genome]
Correlated mutations: Advances and limitations. A study on fusion proteins and on the Cohesin-Dockerin families
A gene atlas of the mouse and human protein-encoding transcriptomes.
Understanding replication in databases and distributed systems
A theory of reciprocity
Altruistic Helping in Human Infants and Young Chimpanzees
Egocentrism Over E-Mail: Can We Communicate as Well as We Think?
Researchers Misunderstand Confidence Intervals and Standard Error Bars.
The benefits of frequent positive affect: does happiness lead to success?
Preimplantation genetic diagnosis.
Agile Software Development with Scrum
The process group approach to reliable distributed computing
ScentTrails: Integrating browsing and searching on the Web
Designing as a conversation with digital materials
The cortical control of movement revisited.
Review of particle physics
Feature selection for classification
Correlation-based Feature Selection for Machine Learning
Taxonomy of trust: Categorizing P2P reputation systems
Protein backbone angle restraints from searching a database for chemical shift and sequence homology.
Topic detection and tracking pilot study: Final report
Three qubits can be entangled in two inequivalent ways
Distributed Entanglement
The effects of animated characters on anxiety, task performance, and evaluations of user interfaces
Infinite latent feature models and the Indian buffet process.
The Whale and the Reactor : A Search for Limits in an Age of High Technology
Document clustering based on non-negative matrix factorization
Seeing is believing? A beginners' guide to practical pitfalls in image acquisition.
SCOWLP: a web-based database for detailed characterization and visualization of protein interfaces.
Sequential Monte Carlo Methods in Practice (Statistics for Engineering and Information Science)
Algorithmic Mechanism Design
An ethnographic study of music information seeking: implications for the design of a music digital library
Perceived usefulness, perceived ease of use, and user acceptance of information technology
A mathematical model of the finding of usability problems
The Cognitive Structure of Emotions
CHORAL: a differential geometry approach to the prediction of the cores of protein structures.
Transcriptional regulation by the numbers: applications.
Transcriptional regulation by the numbers: models
{Deformable Models in Medical Image Analysis: A Survey}
Principal Warps: Thin-Plate Splines and the Decomposition of Deformations
Shock Graphs and Shape Matching
An Introduction to Genetic Algorithms (Complex Adaptive Systems)
Blogs, Wikis, Podcasts, and Other Powerful Web Tools for Classrooms
A symbolic representation of time series, with implications for streaming algorithms
A conceptual architecture for semantic web enabled web services
Reduction of physiological fluctuations in fMRI using digital filters.
Intrinsic signal changes accompanying sensory stimulation: functional brain mapping with magnetic resonance imaging.
Phylogenomics: the beginning of incongruence?
Language Discrimination by Human Newborns and by Cotton-Top Tamarin Monkeys
Probability Inequalities for Sums of Bounded Random Variables
Computational methods for the prediction of protein interactions.
Open source software--an evaluation
GiveALink: Mining a Semantic Network of Bookmarks for Web Search and Recommendation
Algorithmic Detection of Semantic Similarity
Large-Scale Trends in the Evolution of Gene Structures within 11 Animal Genomes.
A map of recent positive selection in the human genome.
Genetic Structure of Human Populations
Collaborative Tagging as a Knowledge Organisation and Resource Discovery Tool
On-Line and Off-Line Handwriting Recognition: A Comprehensive Survey
Foundations of Genetic Algorithms
Feature Subset Selection Using a Genetic Algorithm
A Brief Introduction to Boosting
Evolutionary Computation
Toward Integrating Feature Selection Algorithms for Classification and Clustering
When and how to develop domain-specific languages
An Introduction to Hidden {Markov} Models
Region Competition: Unifying Snakes, Region Growing, and {Bayes/MDL} for Multiband Image Segmentation
The Craft of Research
Meaningful Information
A New Look at the Statistical Model Identification
3D Statistical Shape Models Using Direct Optimisation of Description Length
Diffusion Tensor Imaging: Concepts and Applications
Bias in error estimation when using cross-validation for model selection
The power and promise of population genomics: from genotyping to genome typing
Amusing Ourselves to Death: Public Discourse in the Age of Show Business
Primate motor cortex and free arm movements to visual targets in three-dimensional space. I. Relations between single cell discharge and direction of movement.
Zipf, Power-law, Pareto - a ranking tutorial
Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous
Expression profiling in primates reveals a rapid evolution of human transcription factors.
Nonparametric Bayesian Data Analysis
Evolution of exon-intron structure and alternative splicing in fruit flies and malarial mosquito genomes.
Understanding the Metropolis-Hastings Algorithm
From Total Order to Database Replication
A Digital Fountain Approach to Reliable Distribution of Bulk Data
Knowledge and Common Knowledge in a Distributed Environment
Viceroy: A Scalable and Dynamic Emulation of the Butterfly
Virtual Time and Global States of Distributed Systems
Compressed Bloom Filters
Managing Update Conflicts in Bayou, a Weakly Connected Replicated Storage System
{C}onsensus on {Transaction} {Commit}
A Short Introduction to Failure Detectors for Asynchronous Distributed Systems
Quantum Computation and Quantum Information
Ontologies Are Us: A Unified Model of Social Networks and Semantics
Comparative modeling for protein structure prediction.
PhotoTOC: automatic clustering for browsing personal photographs
Development and neurophysiology of mentalizing.
Classification of user image descriptions
Genome-Wide Prediction of C. elegans Genetic Interactions
How Many Clusters? Which Clustering Method? Answers Via Model-Based Cluster Analysis
Information Retrieval, 2nd edition
Social perception from visual cues: role of the STS region.
Flexibility and packing in proteins
Participation, Remediation, Bricolage: Considering Principal Components of a Digital Culture
Conserved fragments of transposable elements in intergenic regions: evidence for widespread recruitment of MIR- and L2-derived sequences within the mouse and human genomes.
Unsupervised Learning
Ontologies in biology: design, applications and future challenges
The evolution of altruistic punishment
An fMRI Investigation of Emotional Engagement in Moral Judgment
A functional imaging study of cooperation in two-person reciprocal exchange.
A case study in building layered DHT applications
An improved map of conserved regulatory sites for Saccharomyces cerevisiae
Positive and Negative Selection on the Human Genome
From DNA to Diversity: Molecular Genetics and the Evolution of Animal Design
Interacting Minds--A Biological Basis
Competitive Hebbian learning through spike-timing-dependent synaptic plasticity
Interpretation as abduction
Evaluating WordNet-based Measures of Lexical Semantic Relatedness
Proofs and Refutations: The Logic of Mathematical Discovery
Stochastic approaches for modelling in vivo reactions
Cross-layer design for wireless networks
Response of plant-pollinator communities to fire: changes in diversity, abundance and floral reward structure
In quest of an empirical potential for protein structure prediction.
Finding Structure in Time
FALCON: Boosting Knowledge for Answer Engines
Learning surface text patterns for a Question Answering system
Exploring the academic invisible web
Cycles and clustering in bipartite networks
An Evolutionary Approach to Norms
Working memory
Simulation for the Social Scientist
Collected Papers
Multiagent Systems: a Modern Approach to Distributed Artificial Intelligence
Visualizing Email Content: Portraying Relationships from Conversational Histories
DiamondTouch: A Multi-User Touch Technology
The Interactive Workspaces Project: Experiences with Ubiquitous Computing Rooms.
Flatland: New Dimensions in Office Whiteboards
Studying context: a comparison of activity theory, situated action models, and distributed cognition
SmartSkin: An Infrastructure for Freehand Manipulation on Interactive Surfaces
SketchPad: A man-machine graphical communication system
Traits: A mechanism for fine-grained reuse
Metaproteomics: studying functional gene expression in microbial ecosystems.
Theory of mind for a humanoid robot
"Does the autistic child have a ""theory of mind""?"
Large Steps in Cloth Simulation
Protein folding and misfolding
Human microRNA genes are frequently located at fragile sites and genomic regions involved in cancers
RAS Is Regulated by the let-7 MicroRNA Family
Emerging technologies: blogs and wikis: environments for on-line collaboration. : An article from: Language, Learning & Technology
Disambiguating Geographic Names in a Historical Digital Library
An analysis of the most cited articles in software engineering journals--1999
A Theory of Shape by Space Carving
The Design Space of Wireless Sensor Networks
Operations for Learning with Graphical Models
We the Media: Grassroots Journalism by the People, for the People
High-quality video view interpolation using a layered representation
IBM Research TRECVID-2005 Video Retrieval System
Parallax: Managing Storage for a Million Machines
Multi-camera Scene Reconstruction via Graph Cuts
Alignment-free sequence comparisonÃ¢Â€Â”a review
Brain mechanisms linking language and action
Advanced Econometrics
Identification of Causal Effects Using Instrumental Variables
Structural Equations with Latent Variables
Models and Methods in Social Network Analysis
Regression Modeling Strategies
Handbook of Modern Item Response Theory
System of Mobile Agents to Model Social Networks
General Relativity
An Introduction To Quantum Field Theory (Frontiers in Physics)
Maximum-Likelihood Estimation of Migration Rates and Effective Population Numbers in Two Populations Using a Coalescent Approach
Stochastic protein expression in individual cells at the single molecule level
Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts
Folding DNA to create nanoscale shapes and patterns
{GloMoSim: A Library for Parallel Simulation of Large-Scale Wireless Networks}
Parallel Sets: Visual Analysis of Categorical Data
Christ and Culture
Social network fragments: an interactive tool for exploring digital social connections.
High-dimensional and large-scale phenotyping of yeast mutants
Simple Statistical Gradient-Following Algorithms for Connectionist Reinforcement Learning
Beyond Mfold: recent advances in RNA bioinformatics.
Gradient Descent for General Reinforcement Learning
Automated discovery of 3D motifs for protein function annotation.
OrthologID: automation of genome-scale ortholog identification within a parsimony framework
Communication in bacteria: an ecological and evolutionary perspective.
Web 2.0: A New Wave of Innovation for Teaching and Learning?
Fast, frugal, and rational: How rational norms explain behavior
Close agreement between the orientation dependence of hydrogen bonds observed in protein structures and quantum mechanical calculations
"Contour integration by the human visual system: evidence for a local ""association field""."
Exploring Williams-Beuren syndrome using myGrid.
Taverna: a tool for the composition and enactment of bioinformatics workflows
Plans and Situated Actions
Information Architecture for the World Wide Web
Design Patterns: Abstraction and Reuse of Object-Oriented Design
External cognition: how do graphical representations work?
Life Online: Researching Real Experience in Virtual Space : Researching Real Experience in Virtual Space (Ethnographic Alternatives , No 6)
A Taxonomy of Scientific Workflow Systems for Grid Computing
Community Proteomics of a Natural Microbial Biofilm
Systems biology and new technologies enable predictive and preventative medicine.
Network analysis of 2-mode data
Convergence Properties of the Nelder-Mead Simplex Method in Low Dimensions
Making mistakes when predicting shifts in species range in response to global warming
Practical Reinforcement Learning in Continuous Spaces
Lectures on Polytopes
Probing Gene Expression in Live Cells, One Protein Molecule at a Time
Program Construction. Calculating Implementations from Specifications.
Bringing Semantics to Web Services: The OWL-S Approach
Evidence that miRNAs are different from other RNAs.
PhyME: A probabilistic algorithm for finding motifs in sets of orthologous sequences
An introduction to graphical models
An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexes.
Opportunistic Data Structures with Applications
Similarity Search in High Dimensions via Hashing
Genome-scale models of microbial cells: evaluating the consequences of constraints
Reward Timing in the Primary Visual Cortex
The evolution of molecular biology into systems biology.
Probability and Measure
Real Analysis and Probability
Does the arXiv lead to higher citations and reduced publisher downloads for mathematics articles?
Optimization By Direct Search: New Perspectives on Some Classical and Modern Methods
Analysis of user need in image archives
Category-specific cortical activity precedes retrieval during memory search.
The Israel Lobby and U.S. Foreign Policy
Predicting source code changes by mining change history
Molecular evolution of FOXP2, a gene involved in speech and language.
GHT: a geographic hash table for data-centric storage
Extensive Gene Traffic on the Mammalian X Chromosome
Orthologs, paralogs, and evolutionary genomics.
The limits of localization using signal strength: a comparative study
Classical Mechanics (3rd Edition)
Electrostatics calculations: latest methodological advances
GENETAG: a tagged corpus for gene/protein named entity recognition.
Quantum physics in neuroscience and psychology: a neurophysical model of mindâ€“brain interaction
Searching the Web: The public and their queries
Biological imaging by soft x-ray diffraction microscopy
Genomic insights that advance the species definition for prokaryotes
Accurate Calculation of Hydration Free Energies Using Macroscopic Solvent Models
Bayesian Sets
Design pattern implementation in Java and AspectJ
Wilkinson Microwave Anisotropy Probe (WMAP) Three Year Results: Implications for Cosmology
Relevance feedback: a power tool for interactive content-based image retrieval
Architecting for Usability; a Survey
Multifactor-dimensionality reduction reveals high-order interactions among estrogen-metabolism genes in sporadic breast cancer.
Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach
Iterative approach to model identification of biological networks
End-User Searching Challenges Indexing Practices in the Digital Newspaper Photo Archive
Argonauts of the Western Pacific
Watersheds in digital spaces: an efficient algorithm based on immersion simulations
How far are we from the quantum theory of gravity?
Discovering missing links in Wikipedia
Discovering important nodes through graph entropy: the case of Enron email database.
Taming aggressive replication in the Pangaea wide-area file system
Information retrieval as statistical translation
Web Service Modeling Ontology
Independent component analysis of fMRI group studies by self-organizing clustering
Principles of Program Analysis
Ancient duplicated conserved noncoding elements in vertebrates: a genomic and functional analysis.
Low rates of expression profile divergence in highly expressed genes and tissue-specific genes during mammalian evolution.
Gene Regulatory Networks and the Evolution of Animal Body Plans
Horizontal gene transfer among genomes: The complexity hypothesis
Protocols and Architectures for Wireless Sensor Networks
Social Software and Cyber Networks: Ties That Bind or Weak Associations within the Political Organization?
Cooperative diversity in wireless networks: Efficient protocols and outage behavior
An Algebraic Approach to Network Coding
{Practical Network Coding}
DSR The Dynamic Source Routing Protocol for Multihop Wireless Ad Hoc Networks
Extending the wiki paradigm for use in the classroom
Meeting of minds: the medial frontal cortex and social cognition
Automaticity: A theoretical and conceptual analysis.
Emotion Facilitates Perception and Potentiates the Perceptual Benefits of Attention
Cyborgs@cyberspace? An Ethnographer Looks to the Future
Play Between Worlds : Exploring Online Game Culture
A reputation-based approach for choosing reliable resources in peer-to-peer networks
Energy-efficient computing for wildlife tracking: design tradeoffs and early experiences with ZebraNet
Learning in spiking neural networks by reinforcement of stochastic synaptic transmission.
Triangle: {E}ngineering a {2D} {Q}uality {M}esh {G}enerator and {D}elaunay {T}riangulator
Robust Monte Carlo localization for mobile robots
Probabilistic robotics
Moving out from the control room: ethnography in system design
Routing techniques in wireless sensor networks: a survey
Mixin-Based Inheritance
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae.
An excitable gene regulatory circuit induces transient cellular differentiation.
Channel plasmon subwavelength waveguide components including interferometers and ring resonators
2020 Computing Can computers help to explain biology?
Designing Interfaces
BRENDA, the enzyme database: updates and major new developments
User and Task Analysis for Interface Design
Inference of gene regulatory networks and compound mode of action from time course gene expression profiles
Comparison of Affymetrix GeneChip expression measures.
Information Visualization and Visual Data Mining
IP over P2P: Enabling Self-configuring Virtual IP Networks for Grid Computing
Using while moving: HCI issues in fieldwork environments
What are Communities of Practice? A Comparative Review of Four Seminal Works
Prokaryotic evolution in light of gene transfer.
Ontology is Overrated: Categories, Links, and Tags
Concepts for Extending Wiki Systems to Supplement Collaborative Learning
Delay-tolerant networking: an approach to interplanetary Internet
The Nature and Dynamics of Bacterial Genomes
A genetic screen implicates miRNA-372 and miRNA-373 as oncogenes in testicular germ cell tumors.
An application of statistics to comparative metagenomics
Rational choice and the structure of the environment.
Oncomirs â€” microRNAs with a role in cancer
On the resemblance and containment of documents
Placental mammal diversification and the Cretaceousâ€“Tertiary boundary
Bubbles: a technique to reveal the use of information in recognition tasks.
Economic Analysis of Social Interactions
Mapping pathways and phenotypes by systematic gene overexpression.
The effect of oxygen on biochemical networks and the evolution of complex life.
Constructing biological knowledge bases by extracting information from text sources.
{TREC Genomics} track overview.
Overview of {BioCreative Task 1B}: normalized gene lists.
The {P}rotein {D}ata {B}ank. {A} computer-based archival file for macromolecular structures.
Evaluation of {B}io{C}reative assessment of task 2.
Harnessing Complexity: Organizational Implications of a Scientific Frontier
Introduction to the Special Issue: Communication Processes for Virtual Organizations
Complexity Theory and Organization Science
Bounded Rationality, Ambiguity, and the Engineering of Choice
The Human Hippocampus and Spatial and Episodic Memory
A Foundation for the Study of Group Decision Support Systems
Action video game modifies visual selective attention
Food Webs
Toward information extraction: identifying protein names from biological papers.
Butterflies and Plants: A Study in Coevolution
Untraceable electronic mail, return addresses, and digital pseudonyms
Deriving concept hierarchies from text
The Potential Consequences of Pollinator Declines on the Conservation of Biodiversity and Stability of Food Crop Yields
Evolution in Four Dimensions : Genetic, Epigenetic, Behavioral, and Symbolic Variation in the History of Life (Life and Mind: Philosophical Issues in Biology and Psychology)
Historical biogeography, ecology and species richness
Patterns in Property Specifications for Finite-State Verification
An Extensible {S}{A}{T}-Solver
Concurrent Programming Without Locks
Software and the Concurrency Revolution
A Brief Survey of Program Slicing
Understanding and assisting natural regeneration processes in degraded seasonal evergreen forests in northern Thailand
The restoration of forest biodiversity and ecological values.
SOAP-based services provided by the European Bioinformatics Institute.
Emotion Elicitation Using Films
Classical Electrodynamics
Situated Cognition and the Culture of Learning
Noise characteristics and prior expectations in human visual speed perception.
Negative functional MRI response correlates with decreases in neuronal activity in monkey visual area V1
BioMOBY successfully integrates distributed heterogeneous bioinformatics Web Services. The PlaNet exemplar case.
Comparing the Impact of Open Access (OA) vs. Non-OA Articles in the Same Journals
Cooperation and Punishment in Public Goods Experiments
The parallel distributed processing approach to semantic cognition.
Sparse multinomial logistic regression: fast algorithms and generalization bounds
Introduction to the Theory of Computation
The empirical status of cognitive-behavioral therapy: A review of meta-analyses
Statistical Mechanics of Community Detection
Persuasive Technology: Using Computers to Change What We Think and Do (Interactive Technologies)
A growing neural gas network learns topologies
Effective leadership and decision-making in animal groups on the move
Collective Action and the Evolution of Social Norms
C4.5: Programs for Machine Learning (Morgan Kaufmann Series in Machine Learning)
Mutual Information, Fisher Information, and Population Coding
The proximity factor: impact of distance on co-located collaboration
Sharing multimedia content with interactive public displays: a case study
Fast robust automated brain extraction.
fMRI resting state networks define distinct modes of long-distance interactions in the human brain.
Sybilproof reputation mechanisms
Linking teacher and student learning to improve professional development in systemic reform
The Construction of Identity on the Internet: Oops! I've left my diary open to the whole world!
Functional classification of drugs by properties of their pairwise interactions
The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells
Genetic regulators of large-scale transcriptional signatures in cancer.
OBBTree: {A} Hierarchical Structure for Rapid Interference Detection
Point-based value iteration: An anytime algorithm for POMDPs
Bricks: laying the foundations for graspable user interfaces
Limits on super-resolution and how to break them
Class-Based n-gram Models of Natural Language
Multi-View Stereo via Volumetric Graph-Cuts
Advances in Prospect Theory: Cumulative Representation of Uncertainty
Intellectual ability and cortical development in children and adolescents
Chance and necessity in the evolution of minimal metabolic networks
The art of war
Communities of practice and social learning systems
Object lessons
"""Constant, constant, multi-tasking craziness"": managing multiple working spheres"
The future of work: How the new order of business will shape your organization, your management style and your life
LifeLines: visualizing personal histories
Visual Information Seeking: Tight Coupling of Dynamic Query Filters with Starfield Displays
A nonparametric method for automatic correction of intensity nonuniformity in MRI data
Text Mining
Indicators for Monitoring Biodiversity: A Hierarchical Approach
Eye-tracking analysis of user behavior in WWW search.
Technical Paper Recommendation: A Study in Combining Multiple Information Sources
Feature Selection for Unsupervised Learning
Learning to Paraphrase: An Unsupervised Approach Using Multiple-Sequence Alignment
An Introduction to Latent Semantic Analysis
A stochastic parts program and noun phrase parser for unrestricted text
A Systematic Comparison of Various Statistical Alignment Models
Statistical Phrase-Based Translation
Minimum Error Rate Training in Statistical Machine Translation
Discriminative training and maximum entropy models for statistical machine translation
Molecular Modelling: Principles and Applications (2nd Edition)
Undecidability of Static Analysis
Evolution of web site design patterns
Genome-Wide Detection of Polymorphisms at Nucleotide Resolution with a Single DNA Microarray
Google Scholar Versus Metasearch Systems
Introduction to Social Network Methods
Recent advances in hierarchical reinforcement learning
A Theory of the Term Structure of Interest Rates
The Emergence of Up and Down States in Cortical Networks.
De novo identification of repeat families in large genomes
Storytelling with digital photographs
Requirements for photoware
Image-Browser taxonomy and guidelines for designers
Does organisation by similarity assist image browsing?
Sharing and building digital group histories
{VisualSEEk}: a fully automated content-based image query system
Conservation of RET Regulatory Function from Human to Zebrafish Without Sequence Similarity
The Economics of Attention : Style and Substance in the Age of Information
Bloggers' Expectations of Privacy and Accountability: An Initial Survey
In Vivo Fiber Tractography Using {DT--MRI} Data
The basis of anisotropic water diffusion in the nervous system - a technical review
Non-invasive mapping of connections between human thalamus and cortex using diffusion imaging
Tracking Neuronal Fiber Pathways in the Living Human Brain
Looking Into the Functional Architecture of the Brain with Diffusion MRI
Fiber Tract-based Atlas of Human White Matter Anatomy
Virtual in Vivo Interactive Dissection of White Matter Fasciculi in the Human Brain
Estimation of the effective self-diffusion tensor from the NMR spin echo
Diffusion-tensor MRI: theory, experimental design and data analysis -- a technical review
MR Diffusion Tensor Spectroscopy and Imaging
Q-ball imaging
Digital Preservation and Access
Digital Preservation: awareness, Responsibility and Rights Issues
The Lumiere project: Bayesian user modeling for inferring the goals and needs of software users
Complex Analysis
GPS: a general peer-to-peer simulator and its use for modeling BitTorrent
Statemate: a working environment for the development of complex reactive systems
Magnetic resonance imaging.
An Evaluation of Statistical Approaches to Text Categorization
Status of text-mining techniques applied to biomedical text
White matter tractography using diffusion tensor deflection.
Answering Physicians' Clinical Questions: Obstacles and Potential Solutions
Using R for Introductory Statistics
{English Verb Classes and Alternations a preliminary investigation}
The Generative Lexicon
Semantic Structures
Automatic Retrieval and Clustering of Similar Words
The measurement of observer agreement for categorical data
Computers and Intractability: A Guide to the Theory of NP-Completeness (Series of Books in the Mathematical Sciences)
Modal Logic
Quantifying Qualitative Analyses of Verbal Data: A Practical Guide
Genotypic Diversity Within a Natural Coastal Bacterioplankton Population
Genomic Islands and the Ecology and Evolution of Prochlorococcus
Adaptive radiation in a heterogeneous environment
WordNet::Similarity - Measuring the Relatedness of Concepts
Dynamic mapping of human cortical development during childhood through early adulthood
The Creative Mind: Myths and Mechanisms
"Meaningful modeling: what's the semantics of ""semantics""?"
Neural processes underlying conscious perception: Experimental findings and a global neuronal workspace framework
What is the function of the claustrum?
From monkey-like action recognition to human language: an evolutionary framework for neurolinguistics.
Logic of the yeast metabolic cycle: temporal compartmentalization of cellular processes.
Spectral clustering of protein sequences.
Trend Detection Through Temporal Link Analysis
Conceptual biology, hypothesis discovery, and text mining: Swanson's legacy
Is there a unifying mechanism for protein folding?
OntoKhoj: a semantic web portal for ontology searching, ranking and classification
The mathematical basis for deterministic quantum mechanics
User Modelling for News Web Sites with Word Sense Based Techniques
Fast and effective text mining using linear-time document clustering
A survey on visual surveillance of object motion and behaviors
The Physical Implementation of Quantum Computation
Quantum Computation with Quantum Dots
Spatial transformations of diffusion tensor magnetic resonance images
Usage patterns of collaborative tagging systems
Segmentation Using Eigenvectors: A Unifying View
Deictic codes for the embodiment of cognition
Neutral and adaptive variation in gene expression
Peer Review in the Google Age: Is technology changing the way science is done and evaluated?
Accelerated evolution of nervous system genes in the origin of Homo sapiens.
Do bilinguals have two personalities? A special case of cultural frame switching
Learning to Classify Text Using Support Vector Machines: Methods, Theory and Algorithms
Computational Geometry: An Introduction
The Explicit Linear Quadratic Regulator for Constrained Systems
Constrained model predictive control: stability and optimality
Highly optimized tolerance: robustness and design in complex systems
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
Clustering versus faceted categories for information exploration
Eraser: a dynamic data race detector for multithreaded programs
Challenges in enterprise search
Deciphering the evolution and metabolism of an anammox bacterium from a community genome
Typing Haskell in Haskell
Ultimate physical limits to computation
Rebuilding community ecology from functional traits
Likert scales: how to (ab)use them.
Autocorrelated Rates of Change in Animal Populations and their Relationship to Precipitation
The Persona Lifecycle: Keeping People in Mind Throughout Product Design (Interactive Technologies)
Survey propagation: an algorithm for satisfiability
Nominal, Ordinal, Interval, and Ratio Typologies Are Misleading
The Third Wave of Science Studies: Studies of Expertise and Experience
"Fast ""coalescent"" simulation."
Gene trees in species trees
The coalescent
Machine Learning for User Modeling
Relaxed Phylogenetics and Dating with Confidence
Using spin images for efficient object recognition in cluttered 3D scenes
Supercooled Liquids and Glasses
Neural Signatures of Economic Preferences for Risk and Ambiguity
Modeling cellular machinery through biological network comparison
Using thematic analysis in psychology
A Survey of Computer Vision-Based Human Motion Capture
Genetic regulatory mechanisms in the synthesis of proteins.
The Past, Present, and Future for Software Architecture
Darwinian Evolution Can Follow Only Very Few Mutational Paths to Fitter Proteins
The Coming-of-Age of Software Architecture Research
A Statistical Model for User Preference
CFinder: locating cliques and overlapping modules in biological networks
The Emergence of Organizational Forms: A Community Ecology Approach
Graph Theory and Networks in Biology
A review of outsourcing from the resource-based view of the firm
Unit Operations : An Approach to Videogame Criticism
A survey of motif discovery methods in an integrated framework.
Protein complex prediction via cost-based clustering
Network structure and the biology of populations
What is a population? An empirical evaluation of some genetic methods for identifying the number of gene pools and their degree of connectivity
Topological structure analysis of the protein-protein interaction network in budding yeast
Scale-free networks in cell biology.
The Firm as a Distributed Knowledge System: A Constructionist Approach
Dynamic Social Network Analysis using Latent Space Models
Weak pairwise correlations imply strongly correlated network states in a neural population
Theory of dynamic critical phenomena
Milestones in Time: The Value of Landmarks in Retrieving Information from Personal Stores.
Temporal window of integration in auditory-visual speech perception.
Servers for protein structure prediction.
Modern information retrieval: A brief overview
Visual categorization with bags of keypoints
Hyperfeatures - Multilevel Local Coding for Visual Recognition
Reverse Engineering and Design Recovery: a Taxonomy
Formal Concept Analysis Mathematical Foundations
Reverse engineering: a roadmap.
Metabolic stability and epigenesis in randomly constructed genetic nets.
Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution.
Evolution of Hormone-Receptor Complexity by Molecular Exploitation
Visualizing and quantifying molecular goodness-of-fit: small-probe contact dots with explicit hydrogen atoms1
Structure validation by Calpha geometry: phi,psi and Cbeta deviation
Ant colony optimization: Introduction and recent trends
How much expression divergence after yeast gene duplication could be explained by regulatory motif evolution?
A Neural Probabilistic Language Model
Active Learning with Statistical Models
Training products of experts by minimizing contrastive divergence
Products Of Experts
Bayesian Networks and Decision Graphs
A Database of Human Segmented Natural Images and Its Application to Evaluating Segmentation Algorithms and Measuring Ecological Statistics
A Maximum Entropy Approach To Adaptive Statistical Language Modeling
Dynamic Conditional Random Fields: Factorized Probabilistic Models for Labeling and Segmenting Sequence Data
Arithmetic coding for data compression
Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach.
Host-bacterial mutualism in the human intestine.
Protein stability promotes evolvability.
The Competitive Advantage of Sanctioning Institutions
Situating vision in the world
Computing Geodesics and Minimal Surfaces via Graph Cuts
A Maximum-Flow Formulation of the N-Camera Stereo Correspondence Problem
Plasticity of the cis-Regulatory Input Function of a Gene.
Tuning Curves, Neuronal Variability, and Sensory Coding
Social Networks as Health Feedback Displays
Genomic analysis of essentiality within protein networks.
Topological units of environmental signal processing in the transcriptional regulatory network of Escherichia coli.
Future {A}ctive. {M}edia {A}ctivism and the {I}nternet
Do we need a Unique Scientist ID for publications in biomedicine?
Theoretical computer science cheat sheet
A survey of Web metrics
Transcriptional regulation and the evolution of development.
On Clustering fMRI Time Series
The Omnivore's Dilemma : A Natural History of Four Meals
The Free Will Theorem
Inferring Phylogenies
Production of the antimalarial drug precursor artemisinic acid in engineered yeast.
STED microscopy reveals that synaptotagmin remains clustered after synaptic vesicle exocytosis
Everyware : The Dawning Age of Ubiquitous Computing
A volumetric method for building complex models from range images
A neuronal network model linking subjective reports and objective physiological data during conscious perception.
Dynamic Models of Segregation
Novel methods improve prediction of speciesâ€™ distributions from occurrence data
Limits on theory of mind use in adults.
RNA folding energy landscapes
Creating efficient codebooks for visual recognition
A statistical interpretation of term specificity and its application in retrieval
{CCFinder: A Multi-Linguistic Token-based Code Clone Detection System for Large Scale Source Code}
Hipikat: A Project Memory for Software Development
Winnowing: Local Algorithms for Document Fingerprinting
Ethnography in/of the World System: The Emergence of Multi-Sited Ethnography
Flexible Text Segmentation with Structured Multilabel Classification
CoaSim: A Flexible Environment for Simulating Genetic Data under Coalescent Models
Collegial decision making based on social amplification leads to optimal group formation.
Asymmetric substitution patterns in the two DNA strands of bacteria.
Ontological Engineering : with examples from the areas of Knowledge Management, e-Commerce and the Semantic Web. First Edition (Advanced Information and Knowledge Processing)
Competitive Coevolution through Evolutionary Complexification
Evolving Virtual Creatures
A probabilistic constraints approach to language acquisition and processing
QoS-aware middleware for Web services composition
The Wealth of Networks: How Social Production Transforms Markets and Freedom
High-throughput RNAi screening in cultured cells: a user's guide
STRATEGIES FOR RNA FOLDING AND ASSEMBLY
The Digital Divide as a Complex and Dynamic Phenomenon
Temporal autocorrelation in univariate linear modeling of FMRI data.
A global optimisation method for robust affine registration of brain images.
A distal enhancer and an ultraconserved exon are derived from a novel retroposon.
From emotion perception to emotion experience: Emotions evoked by pictures and classical music
The cognitive control of emotion.
What songbirds teach us about learning
Software Architecture as a Set of Architectural Design Decisions
The evolving role of microRNAs in animal gene expression.
StrAl: progressive alignment of non-coding RNA using base pairing probability vectors in quadratic time
Climate and atmospheric history of the past 420,000 years from the Vostok ice core, Antarctica
Temporal encoding of place sequences by hippocampal cell assemblies.
Statistical Comparisons of Classifiers over Multiple Data Sets
On Comparing Classifiers: Pitfalls to Avoid and a Recommended Approach
SynTReN: a generator of synthetic gene expression data for design and analysis of structure learning algorithms
Functional imaging of 'theory of mind'
Shared representations between self and other: a social cognitive neuroscience view.
An introduction to computational learning theory
The fluorescent toolbox for assessing protein location and function.
M{OPS}: an infrastructure for examining security properties of software
A completeness theorem for {K}leene algebras and the algebra of regular events
Scientific Illiteracy and the Partisan Takeover of Biology
New Tools Provide New Insights in NMR Studies of Protein Dynamics
Symstra: A framework for generating object-oriented unit tests using symbolic execution
CUTE: A Concolic Unit Testing Engine for C
Culture and Cognition
Family-based designs in the age of large-scale gene-association studies.
An integrated view of protein evolution.
Exploration and {E}xploitation in {O}rganizational {L}earning
Illusion and well-being: a social psychological perspective on mental health.
Guest Editors' Introduction: Social Networks and Social Networking
Digital family portraits: supporting peace of mind for extended family members
Dynamic magnetic resonance imaging of human brain activity during primary sensory stimulation.
Newsweeder: Learning to filter netnews
The science of scientific writing
Quantum Field Theory in Curved Spacetime
DNA motifs in human and mouse proximal promoters predict tissue-specific expression
Coming Together around Library 2.0: A Focus for Discussion and a Call to Arms
Gene selection and classification of microarray data using random forest.
Polycomb complexes repress developmental regulators in murine embryonic stem cells
Unique features of action potential initiation in cortical neurons.
Repeated morphological evolution through cis-regulatory changes in a pleiotropic gene
Climate sensitivity constrained by temperature reconstructions over the past seven centuries
Cybersociety 2.0 : Revisiting Computer-Mediated Community and Technology (New Media Cultures)
Three-dimensional tracking of axonal projections in the brain by magnetic resonance imaging.
Fiber tracking: principles and strategies - a technical review
GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways
Emotion recognition in human-computer interaction
Theory of Diffraction by Small Holes
Activity-dependent scaling of quantal amplitude in neocortical neurons.
A survey on the use of relevance feedback for information access systems
Large-scale identification of protein-protein interaction of Escherichia coli K-12.
On the Origin of the Extracellular Action Potential Waveform: A Modeling Study
The Cascade-Correlation Learning Architecture
The Population Frequencies of Species and the Estimation of Population Parameters
Estimation of Probabilities from Sparse Data for the Language model Component of a Speech Recognizer
Accurate Unlexicalized Parsing
Statistical Decision-Tree Models for Parsing
Introduction to WordNet: An On-line Lexical Database
WordNet: a lexical database for English
Maximum entropy models for natural language ambiguity resolution
Word Space
On category theory as a (meta) ontology for information systems research.
Semantic database modeling: survey, applications, and research issues
Bacterially speaking.
The Theory Underlying Concept Maps and How to Construct Them
Semantic networks: visualizations of knowledge
A resilient, low-frequency, small-world human brain functional network with highly connected association cortical hubs.
User Acceptance of Information Technology: Toward a Unified View
Construct validity in psychological tests.
The Danger Model: A Renewed Sense of Self
Overview of BioCreAtIvE: critical assessment of information extraction for biology.
BioCreAtIvE Task 1A: gene mention finding evaluation
The magical number 4 in short-term memory: a reconsideration of mental storage capacity.
Sleep, Learning, and Dreams: Off-line Memory Reprocessing
Feature-Centric Evaluation for Efficient Cascaded Object Detection
The pyramid match kernel: discriminative classification with sets of image features
Applying UML and Patterns : An Introduction to Object-Oriented Analysis and Design and Iterative Development (3rd Edition)
Genome-wide computational prediction of transcriptional regulatory modules reveals new insights into human gene expression
Evidence for stabilizing selection in a eukaryotic enhancer element
Structure and evolution of transcriptional regulatory networks
Structure and evolution of protein interaction networks: a statistical model for link dynamics and gene duplications.
Duplication-divergence model of protein interaction network
Duplicated genes evolve slower than singletons despite the initial rate increase.
Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees
The neutral theory of molecular evolution
The ``New'' Science of Networks
Evolution by gene duplication: an update
Collaborative thesaurus tagging the Wikipedia way
Plasma perspective on strong field multiphoton ionization.
Augmenting Human Intellect: A Conceptual Framework
Cognitive Walkthrough for the Web ã‚¦ã‚§ãƒ–èªçŸ¥ã‚¦ã‚©ãƒ¼ã‚¯ã‚¹ãƒ«ãƒ¼ã«ã‚ˆã‚‹ã‚¦ã‚§ãƒ–ã‚µã‚¤ãƒˆãƒ¦ãƒ¼ã‚¶ãƒ“ãƒªãƒ†ã‚£ã®è©•ä¾¡
Systematic Review: Impact of Health Information Technology on Quality, Efficiency, and Costs of Medical Care
Neurons in the orbitofrontal cortex encode economic value.
MULTILISP: a language for concurrent symbolic computation
In silico two-hybrid system for the selection of physically interacting protein pairs.
A Gene Expression Map for Caenorhabditis elegans
Phylogeny estimation: traditional and Bayesian approaches.
A Study of Blog Search
FANMOD: a tool for fast network motif detection.
A systematic comparison and evaluation of biclustering methods for gene expression data
A deterministic motif finding algorithm with application to the human genome
Complexity and Philosophy
Identification and Classification of Conserved RNA Secondary Structures in the Human Genome
Single spin detection by magnetic resonance force microscopy
UCSF Chimera--a visualization system for exploratory research and analysis.
Engaging Learning : Designing e-Learning Simulation Games (Pfeiffer Essential Resources for Training and HR Professiona)
Probabilistic Non-linear Principal Component Analysis with Gaussian Process Latent Variable Models
Enterprise 2.0: The Dawn of Emergent Collaboration
Optimal representation of sensory information by neural populations
Classifying spatial patterns of brain activity with machine learning methods: Application to lie detection
Case Study Research : Design and Methods
Text Mining for Biology And Biomedicine
Spatial independent component analysis of functional MRI time-series: to what extent do results depend on the algorithm used?
Towards a taxonomy of software change
Neural correlations, population coding and computation.
Separating respiratory-variation-related fluctuations from neuronal-activity-related fluctuations in fMRI.
Cross-layer design: a survey and the road ahead
The ASTRAL compendium in 2004
Generalizing the Hough Transform to Detect Arbitrary Shapes
{Data Structures for Range Searching}
Three-Dimensional Alpha Shapes
{Rapid and Sensitive protein Similarity Searches}
{GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences}
Deciphering principles of transcription regulation in eukaryotic genomes
Term Weighting Approaches in Automatic Text Retrieval
High-resolution proteinâ€“protein docking
A learning algorithm for Boltzmann machines
Development of Orientation Preference Maps in Ferret Primary Visual Cortex
Compressed sensing
Short blocks from the noncoding parts of the human genome have instances within nearly all known genes and relate to biological processes
Social network analysis: An approach and technique for the study of information exchange
Constraint-based automatic test data generation
Empirical Study on Collaborative Writing: What Do Co-authors Do, Use, and Like?
Women's Ways of Knowing: The Development of Self, Voice, and Mind
Surface plasmon subwavelength optics
Control of developmental regulators by Polycomb in human embryonic stem cells.
{O}n the theory of scales of measurement
Computational Geometry: Algorithms and Applications, Second Edition
Informed Prefetching and Caching
Protest in an Information Society: a review of literature on social movements and new ICTs
A social proxy for distributed tasks: design and evaluation of a working prototype
Recursive syntactic pattern learning by songbirds
Clustering with Bregman divergences
How the Semantic Web is Being Used: An Analysis of FOAF Documents
Unsupervised learning of finite mixture models
The time course of visual processing: from early perception to decision-making
Phylogenies and the Comparative Method
The Measurement of Selection on Correlated Characters
Serendipitous discovery of Wolbachia genomes in multiple Drosophila species
An adaptive energy-efficient MAC protocol for wireless sensor networks
Ontologies Come of Age
InfoXtract location normalization: a hybrid approach to geographic references in information extraction
Attentional interference effects of emotional pictures: threat, negativity, or arousal?
RSS MORE THAN JUST NEWS FEEDS
Greedy randomized adaptive search procedures
A New Method for Solving Hard Satisfiability Problems
Understanding Context Before Using It.
Model-driven development: a metamodeling foundation
MDA: revenge of the modelers or UML utopia?
Phylogenetic Shadowing of Primate Sequences to Find Functional Regions of the Human Genome
GROMACS 3.0: A package for molecular simulation and trajectory analysis.
NAMD2: greater scalability for parallel molecular dynamics.
Kelips: Building an Efficient and Stable P2P DHT Through Increased Memory and Background Overhead
Types of software evolution and software maintenance
How Maps Work: Representation, Visualization, and Design
Recovering traceability links between code and documentation
Population Size Does Not Influence Mitochondrial Genetic Diversity in Animals
Asymmetric Coevolutionary Networks Facilitate Biodiversity Maintenance
On-line construction of suffix trees
Smashing the Stack for Fun and Profit
Virtual machines: versatile platforms for systems and processes
Intrusion Detection Using Sequences of System Calls
StackGuard: Automatic Adaptive Detection and Prevention of Buffer-Overflow Attacks
How Nature Works: The Science of Self-Organized Criticality
The Meme Machine (Popular Science)
The Blind Watchmaker: Why the Evidence of Evolution Reveals a Universe without Design
Evolutionary Games and Population Dynamics
An Introduction to Game Theory
Sync: How Order Emerges From Chaos In the Universe, Nature, and Daily Life
A method to define an Enterprise Architecture using the Zachman Framework
A framework for information systems architecture
Flexibility and conformational entropy in protein-protein binding.
Bipartite graph partitioning and data clustering
Handbook of Computational Economics, Volume 2: Agent-Based Computational Economics
The Ants
Consilience : The Unity of Knowledge (Vintage)
Individual-based Modeling and Ecology: (Princeton Series in Theoretical and Computational Biology)
Introduction to Evolutionary Computing (Natural Computing Series)
Meditation experience is associated with increased cortical thickness.
Swarm Creativity : Competitive Advantage through Collaborative Innovation Networks 
The Frame of the Game: Blurring the Boundary between Fiction and Reality in Mobile Experiences
Flexible proteinâ€“protein docking
Balancing Solvation and Intramolecular Interactions:â€‰ Toward a Consistent Generalized Born Force Field
Physically realistic homology models built with ROSETTA can be more accurate than their templates.
Laws of Software Evolution Revisited
Software Reflexion Models: Bridging the Gap between Design and Implementation
{L}ow-{L}evel {C}omponents of {A}nalytic {A}ctivity in {I}nformation {V}isualization
Investigations into resting-state connectivity using independent component analysis.
{I}lluminating the {P}ath: {T}he {R}esearch and {D}evelopment {A}genda for {V}isual {A}nalytics
Hierarchical clustering to measure connectivity in fMRI resting-state data
Link mining: a survey
Prediction and ranking algorithms for event-based network data
Numerical Cognition Without Words: Evidence from Amazonia
Molecular dynamics and protein function
Functional connectivity: the principal-component analysis of large (PET) data sets.
Analysis of fMRI data by blind separation into independent spatial components.
Towards an Integrated Protein-Protein Interaction Network: A Relational Markov Network Approach
How to solve it : modern heuristics
Discovering informative connection subgraphs in multi-relational graphs
The Death of Cinema: History, Cultural Memory, and the Digital Dark Age
Why Minimal Guidance During Instruction Does Not Work: An Analysis of the Failure of Constructivist, Discovery, Problem-Based, Experiential, and Inquiry-Based Teaching
What is the role of genome duplication in the evolution of complexity and diversity?
Clusters of Internally Primed Transcripts Reveal Novel Long Noncoding RNAs
Opinion Evolution in Closed Community
A Bivalent Chromatin Structure Marks Key Developmental Genes in Embryonic Stem Cells
Quantum computing
Prioritizing Web Usability
Discipline and Punish : The Birth of the Prison
Folksonomies: The Fall and Rise of Plain-text Tagging
Similarity measures
Transformation: The missing link of MDA
Thousands of samples are needed to generate a robust gene list for predicting outcome in cancer
Implications for design
Estimating Absolute Rates of Molecular Evolution and Divergence Times: A Penalized Likelihood Approach
Measuring information transfer
Emergent Properties of Reduced-Genome Escherichia coli
Introduction to Monte Carlo methods
Becoming Japanese: Colonial Taiwan and the Politics of Identity Formation
Non-coding RNA
Statistical and Bayesian approaches to RNA secondary structure prediction.
The Mind's I: Fantasies and Reflections on Self & Soul
Scoring residue conservation.
Dynamics Of Complex Systems (Studies in Nonlinearity)
Interweaving mobile games with everyday life
Relational Quantum Mechanics
Weakening of tropical Pacific atmospheric circulation due to anthropogenic forcing
Mitochondrial DNA and human evolution.
Opinion dynamics and bounded confidence models, analysis and simulation
Staged configuration through specialization and multilevel configuration of feature models
An Introduction to Conditional Random Fields for Relational Learning
Complexity: Life at the Edge of Chaos
Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae
Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations.
Free radicals, metals and antioxidants in oxidative stress-induced cancer.
Using structural context to recommend source code examples
Correlated mutations and residue contacts in proteins
Collaborative Tagging and Semiotic Dynamics
Detecting faces in images: a survey
Pure Data: another integrated computer music environment
Advances in Knowledge Discovery and Data Mining
A Detailed Investigation into the Effectiveness of Earcons
Optimized link state routing protocol for ad hoc networks
Mobile ad hoc networking: imperatives and challenges
Parsec: a parallel simulation environment for complex systems
Stumbling on Happiness
RNA synthetic biology
Path Integral Methods and Applications
Neurobiological Substrates of Dread
Gene prioritization through genomic data fusion
Simple sequence repeats as advantageous mutators in evolution.
The Role of Deliberate Practice in the Acquisition of Expert Performance
A Note on Distributed Computing
A New Extension of the Kalman Filter to Nonlinear Systems
Optimal Nonlinear Prediction of Random Fields on Networks
Dogear: Social bookmarking in the enterprise
Using intelligent task routing and contribution review to help communities build artifacts of lasting value
Detecting fuzzy community structures in complex networks with a Potts  model
Extracting reputation in multi agent systems by means of social network topology
SERF: integrating human recommendations with search
Atomic Decomposition by Basis Pursuit
Applied Nonparametric Regression
Deterministic nonperiodic flow
Predicting Time Series with Support Vector Machines
Time Series Prediction: Forecasting the Future and Understanding the Past
Determining Lyapunov Exponents from a Time Series
Ridge regression: Biased estimation for nonorthogonal problems
Comparison of Parametric Representations for Monosyllabic Word Recognition in Continuously Spoken Sentences
Improved boosting algorithms using confidence-rated predictions
Dating of the human-ape splitting by a molecular clock of mitochondrial {DNA}
A hidden {Markov} model approach to variation among sites in rate of evolution
A new statistical method for haplotype reconstruction from population data
The Structure of Haplotype Blocks in the Human Genome
BicAT: a biclustering analysis toolbox
Handbook of Metaheuristics
Protein structure comparison: implications for the nature of â€˜fold spaceâ€™, and structure and function prediction
Genetic dissection of complex traits
Distance Matters
Large-scale neural models and dynamic causal modelling.
Modelling event-related responses in the brain.
Models of brain function in neuroimaging.
BAli-Phy: simultaneous Bayesian inference of alignment and phylogeny.
Additivity in protein-DNA interactions: how good an approximation is it?
The notification collage: posting information to public and personal displays
Social Networks and Collective Action: A Theory of the Critical Mass. III
PILER: identification and classification of genomic repeats
A multicenter, randomized, controlled clinical trial of transfusion requirements in critical care. Transfusion Requirements in Critical Care Investigators, Canadian Critical Care Trials Group.
Institutions, Institutional Change and Economic Performance
An overview of data warehousing and OLAP technology
Reconstruction and representation of 3D objects with radial basis functions
Proofs are Programs: 19th Century Logic and 21st Century Computing
Information Anxiety 2 (Hayden/Que)
ACTORS: A Model of Concurrent Computation in Distributed Systems
Exploratory search: from finding to understanding
Towards a standard upper ontology.
Where's Downtown?: Behavioral Methods for Determining Referents of Vague Spatial Queries
Grounding words in perception and action: computational insights
Semiotic schemas: A framework for grounding language in action and perception
Contributions of memory circuits to language: the declarative/procedural model.
Fluid Concepts And Creative Analogies: Computer Models Of The Fundamental Mechanisms Of Thought
Specificity, free energy and information content in protein-DNA interactions.
The Slab Allocator: An Object-Caching Kernel Memory Allocator
Predicting stochastic gene expression dynamics in single cells.
Systems biology approaches identify ATF3 as a negative regulator of Toll-like receptor 4.
Epigenetics: Unfinished symphony
Whole-genome sequence assembly for mammalian genomes: Arachne 2.
Repbase Update, a database of eukaryotic repetitive elements.
The value of prior knowledge in discovering motifs with MEME.
ROC Graphs: Notes and Practical Considerations for Researchers
Data mountain: using spatial memory for document management
Writing Up Qualitative Research
Design guidelines for landmarks to support navigation in virtual environments
Adaptive navigation support with public displays
Waypointing and social tagging to support program navigation
Gamma (40-100 Hz) oscillation in the hippocampus of the behaving rat
Differences between pair-wise and multi-sequence alignment methods affect vertebrate genome comparisons
Blobworld: image segmentation using expectation-maximization and its application to image querying
Computational Explorations in Cognitive Neuroscience: Understanding the Mind by Simulating the Brain
Progressive Meshes
TFBS: Computational framework for transcription factor binding site analysis.
The compositional structure of Gene Ontology terms.
A Middleware for Building Context-Aware Mobile Services
Myosin V Walks Hand-Over-Hand: Single Fluorophore Imaging with 1.5-nm Localization
Rethinking Visualization: A High-Level Taxonomy
RNA folding causes secondary structure rearrangement.
sc-PDB:â€‰ an Annotated Database of Druggable Binding Sites from the Protein Data Bank
Knowledge precepts for design and evaluation of information visualizations
A maximum-entropy-inspired parser
Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes.
Evaluating interfaces for privacy policy rule authoring
Three Ways to Grow Designs: A Comparison of Embryogenies for an Evolutionary Design Problem
An Experimental Study of the Skype Peer-to-Peer VoIP System
Implementing product line variabilities
{P}robability-based protein identification by searching sequence databases using mass spectrometry data.
Evolutionary turnover of mammalian transcription start sites.
Slope one predictors for online rating-based collaborative filtering
Building an example application with the unstructured information management architecture
Bibliometric Impact Measures Leveraging Topic Analysis
A neural mass model for MEG/EEG: coupling and neuronal dynamics.
A survey of mobility models for ad hoc network research
A southern California freeway is a physical and social barrier to gene flow in carnivores
Exploring the potential for social tagging and folksonomy in art museums: proof of concept
Investigating social tagging and folksonomy in art museums with steve.museum
A circumplex model of affect
Evolving semantic web with social navigation
The effects of human population structure on large genetic association studies.
Multitude : War and Democracy in the Age of Empire
Global Networks, Linked Cities
Globalization and Its Discontents: Essays on the New Mobility of People and Money
Towards realistic mobility models for mobile ad hoc networks
Streams, Structures, Spaces, Scenarios, Societies (5S): A Formal Model for Digital Libraries
Digital Libraries
The Stanford Digital Library Metadata Architecture
The Quiet Revolution: Biodiversity Informatics and the Internet
What are digital libraries? Competing visions
Copy detection mechanisms for digital documents
Making use: Scenario-based design of human-computer interactions
Notification and awareness: Synchronizing task-oriented collaborative activity
The Digital Library Integrated Task Environment (DLITE)
Towards a Neurobiological Theory of Consciousness
Hierarchical classification of Web content
Interoperability of Biodiversity Databases: Biodiversity Information on Every Desktop
Concurrency Control in Groupware Systems
Rethinking Innateness: A Connectionist Perspective on Development
Connectionism and Cognitive Architecture: A Critical Analysis
Comparing the Performance of Database Selection Algorithms
Lisp: Good News; Bad News; How to Win Big
Structure-Mapping: A Theoretical Framework for Analogy
Greenstone: A Comprehensive Open-Source Digital Library Software System
Automatic Document Metadata Extraction Using Support Vector Machines
Relevance feedback revisited
Artificial Intelligence: The Very Idea
â€˜Neuralâ€™ Computation of Decisions in Optimization Problems
What is Social Informatics and Why Does it Matter?
Metabolic functions of duplicate genes in {S}accharomyces cerevisiae.
Network growth models and genetic regulatory networks.
Usability Engineering (Interactive Technologies)
Doing It in Cyberspace: Cultural Sensitivity in Applied Anthropology
Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise
Statistical modeling of biomedical corpora: mining the Caenorhabditis Genetic Center Bibliography for genes related to life span.
Combining evidence, biomedical literature and statistical dependence: new insights for functional annotation of gene sets.
A systematic model to predict transcriptional regulatory mechanisms based on overrepresentation of transcription factor binding profiles
A component- and message-based architectural style for GUI software
The Bias of Complementarity Hotspots toward Marginal Populations
The ED strategy: how species-level surrogates indicate general biodiversity patterns through an 'environmental diversity' perspective
Consequences of changing biodiversity
Architecture-based runtime software evolution
The rendering equation
Neocortical network activity in vivo is generated through a dynamic balance of excitation and inhibition.
Positive Feedback as a Search Strategy
Sparse Bayesian Learning and the Relevance Vector Machine
The Selfish Gene: 30th Anniversary Edition--with a new Introduction by the Author
Evolution at the nucleotide level: the problem of multiple whole-genome alignment
Ecological Restoration and Global Climate Change
Why and Where: A Characterization of Data Provenance
A survey of data provenance in e-science
Don't Make Me Think: A Common Sense Approach to Web Usability, 2nd Edition
Neuronal Oscillations Enhance Stimulus Discrimination by Ensuring Action Potential Precision
Dynamic Bayesian Networks : Representation, Inference and Learning
The art of electronics
Sparse Principal Component Analysis
Renormalization group analysis of the small-world network model
Apollo: a sequence annotation editor
Parallel database systems: the future of high performance database systems
C-store: a column-oriented DBMS
Spatial information retrieval and geographical ontologies an overview of the SPIRIT project
Land-plant ecology on the basis of functional traits
Distributed Simulation: A Case Study in Design and Verification of Distributed Programs.
Evaluating implicit measures to improve web search
Automatically Generating Extraction Patterns from Untagged Text
Semi-Markov Conditional Random Fields for Information Extraction
Global Shadows : Africa in the Neoliberal World Order
Model-Based Clustering, Discriminant Analysis and Density Estimation.
Imitation, mirror neurons and autism.
Microbial sciences: the superficial life of microbes.
Simple unification-based type inference for GADTs
Links between annual, Milankovitch and continuum temperature variability
Genetic evidence for complex speciation of humans and chimpanzees.
The DNA sequence and biological annotation of human chromosome 1.
Heterotachy in Mammalian Promoter Evolution
Kernel-based data fusion and its application to protein function prediction in yeast.
Robust Wide Baseline Stereo from Maximally Stable Extremal Regions
CMC: a pragmatic approach to model checking real code
Simultaneous inference of selection and population growth from patterns of variation in the human genome
How Bodies Matter: Five Themes for Interaction Design
Compositional pointer and escape analysis for Java programs
Reinforcement Learning I: An Introduction
Measurements, Analysis, and Modeling of BitTorrent-like Systems
Image-based method for retrospective correction of physiological motion effects in fMRI: RETROICOR.
Detecting community structure in networks
When is a Functional Program Not a Functional Program?
Readings in Information Visualization: Using Vision to Think (Interactive Technologies)
eBURST: Inferring Patterns of Evolutionary Descent among Clusters of Related Bacterial Genotypes from Multilocus Sequence Typing Data
The structure of the information visualization design space
Full Text
The Political Blogosphere and the 2004 U.S. Election: Divided They Blog
Apes Save Tools for Future Use
Genomics and the Irreducible Nature of Eukaryote Cells
{SPOMSIM}: software for stochastic patch occupancy models of metapopulation dynamics
A systems approach to mapping DNA damage response pathways.
Early goal-directed therapy in the treatment of severe sepsis and septic shock.
Leave a Reply: An Analysis of Weblog Comments
Sensitivity of Systematic Reserve Selection to Decisions about Scale, Biological Data, and Targets: Case Study from Southern British Columbia
Observing local and global properties of metabolic pathways: 'load points' and 'choke points' in the metabolic networks.
Protein interaction networks of Saccharomyces cerevisiae, Caenorhabditis elegans and Drosophila melanogaster: large-scale organization and robustness.
Semantic similarity methods in wordNet and their application to information retrieval on the web
Experimental evaluation of wireless simulation assumptions
Exploring the computing literature with visualization and stepping stones & pathways
Model selection and model averaging in phylogenetics: advantages of akaike information criterion and bayesian approaches over likelihood ratio tests.
Synthetic biology: new engineering rules for an emerging discipline
Uniquely human social cognition
Effects of missing data in social networks
The role of the basal ganglia in habit formation
Why sex matters for neuroscience
Addressing the problems with life-science databases for traditional uses and systems biology
A likelihood approach to analysis of network data
The Mobile Connection : The Cell Phone's Impact on Society (The Morgan Kaufmann Series in Interactive Technologies)
Institutionalized Organizations: Formal Structure as Myth and Ceremony
Beyond Epistemology: Relativism and Engagement in the Politics of Science
Photobook: Content-based Manipulation of Image Databases
Role for a bidentate ribonuclease in the initiation step of {RNA} interference
Human micro{RNA}s are processed from capped, polyadenylated transcripts that can also function as m{RNA}s
Duplexes of 21-nucleotide {RNA}s mediate {RNA} interference in cultured mammalian cells
A cellular function for the {RNA}-interference enzyme {D}icer in the maturation of the let-7 small temporal {RNA}
The nuclear {RN}ase {III} {D}rosha initiates micro{RNA} processing
R{NA} interference--2001
The transcriptional regulatory code of eukaryotic cells - insights from genome-wide analysis of chromatin organization and transcription factor binding
A piece of place: Modeling the digital on the real in Second Life
Massively Multiplayer Online Role-Playing Games: The People, the Addiction and the Playing Experience
Human and Mouse Gene Structure: Comparative Analysis and Application to Exon Prediction
Systematic identification of functional orthologs based on protein network comparison.
The Colonial Origins of Comparative Development: An Empirical Investigation
Linear prediction: A tutorial review
Why do tagging systems work?
Analysis of computational approaches for motif discovery.
Visualizing Tags over Time
At the Crossroads of Knowledge Management and Social Software
Collaborative Creation of Communal Hierarchical Taxonomies in Social Tagging Systems
Domains, Motifs, and Scaffolds: The Role of Modular Interactions in the Evolution and Wiring of Cell Signaling Circuits
Perpetual Contact : Mobile Communication, Private Talk, Public Performance
Mobile Interaction Design
A common inversion under selection in Europeans
Are social networks technologically embedded?How networks are changing today with changes in communication technology
Lecture Notes in Quantum Mechanics
The Underpinnings of the BOLD Functional Magnetic Resonance Imaging Signal
Recursive SVM feature selection and sample classification for mass-spectrometry and microarray data.
A Neural Representation of Categorization Uncertainty in the Human Brain
HMMSTR: a hidden Markov model for local sequence-structure correlations in proteins1
What makes Web sites credible?: a report on a large quantitative study
How do users evaluate the credibility of Web sites?: a study with over 2,500 participants
Artificial fishes: physics, locomotion, perception, behavior
Detection of functional connectivity using temporal correlations in MR images.
The Problem with Threads
The Bittorrent P2p File-Sharing System: Measurements And Analysis
Hotspots for copy number variation in chimpanzees and humans
Two decades of statistical language modeling: where do we go from here?
The Bias of Communication
Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction.
Content analysis : an introduction to its methodology
Protein secondary structure prediction based on position-specific scoring matrices.
Psychophysiological and Modulatory Interactions in Neuroimaging
A novel method for detecting intramolecular coevolution: adding a further dimension to selective constraints analyses.
Fatality in mice due to oversaturation of cellular microRNA/short hairpin RNA pathways
A simple rule for the evolution of cooperation on graphs and social networks
Interacting Adaptive Processes with Different Timescales Underlie Short-Term Motor Learning
Digital Game-Based Learning: It's Not Just the Digital Natives Who Are Restless
Inferring Nonneutral Evolution from Human-Chimp-Mouse Orthologous Gene Trios
Generating Query Substitutions
VisDB: Database Exploration using Multidimensional Visualization
An Architecture for the Aggregation and Analysis of Scholarly Usage Data
Stochastic Processes and Filtering Theory
Robust Real-Time Face Detection
A General Framework for Object Detection
Pictorial Structures for Object Recognition
Environmental diversity: on the best-possible use of surrogate data for assessing the relative biodiversity of sets of areas
Representation and timing in theories of the dopamine system.
Usefulness of the Umbrella Species Concept as a Conservation Tool
An Algorithm to Determine Peer-Reviewers
A Conceptual Model of Service Quality and Its Implications for Future Research
Seeing it differently: visual processing in autism.
Osprey: a network visualization system.
Modeling the Dynamics of Social Networks
Regulatory Blueprint for a Chordate Embryo
Three-dimensional shape searching: state-of-the-art review and future trends
A survey of content based 3D shape retrieval methods
Bayesian extension to the language model for ad hoc information retrieval
Six Learning Barriers in End-User Programming Systems
Retroactive Answering of Search Queries
Protein Family Expansions and Biological Complexity
Differential Repression of Alternative Transcripts: A Screen for miRNA Targets
Direct cortical control of muscle activation in voluntary arm movements: a model.
Graph-based analysis and visualization of experimental results with ONDEX
Designing the whyline: a debugging interface for asking questions about program behavior
A computational procedure for determining energetically favorable binding sites on biologically important macromolecules.
Visual Thinking
Gnu Scientific Library: Reference Manual
Birth of a chimeric primate gene by capture of the transposase gene from a mobile element.
Identifying Hierarchical Structure in Sequences: A linear-time algorithm
Agency Theory: An Assessment and Review
The Information Capacity of the Human Motor System in Controlling the Amplitude of Movement.
Benchmarking ortholog identification methods using functional genomics data
BOA: The {B}ayesian Optimization Algorithm
Missing data and the design of phylogenetic analyses.
Natural language and natural selection
CURE: an efficient clustering algorithm for large databases
Replacing suffix trees with enhanced suffix arrays
Integrated Assessment and Prediction of Transcription Factor Binding
Cubesvd: A novel approach to personalized web search
The Medium of the Video Game
Learning by Doing: A Comprehensive Guide to Simulations, Computer Games, and Pedagogy in e-Learning and Other Educational Experiences
How do site-specific DNA-binding proteins find their targets?
Towards the Semantic Web: Collaborative Tag Suggestions
Position Paper, Tagging, Taxonomy, Flickr, Article, ToRead
Light Microscopy Techniques for Live Cell Imaging
Proposed Experiment to Test Local Hidden-Variable Theories
Teleporting an unknown quantum state via dual classical and Einstein-Podolsky-Rosen channels
Entanglement of Formation of an Arbitrary State of Two Qubits
The COG database: new developments in phylogenetic classification of proteins from complete genomes
A Survey of Parallel Genetic Algorithms
The endophenotype concept in psychiatry: etymology and strategic intentions.
Evaluating and improving power in whole-genome association studies using fixed marker sets
Noise in protein expression scales with natural protein abundance
Genome-wide analysis of mammalian promoter architecture and evolution
Influence of metabolic network structure and function on enzyme evolution.
A bridging model for parallel computation
Computational redesign of endonuclease DNA binding and cleavage specificity.
Towards Sensor Database Systems
Middleware to support sensor network applications
Introduction to Supersymmetry
Electronic Confinement and Coherence in Patterned Epitaxial Graphene
QuickCheck: a lightweight tool for random testing of {Haskell} programs
The Lambda Calculus, Its Syntax and Semantics (Studies in Logic and the Foundations of Mathematics, Volume 103). Revised Edition
A String Metric for Ontology Alignment
How do people know?
Project MUSE
A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
Graph-Based Data Mining
Detecting recent positive selection in the human genome from haplotype structure
A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms
Haplotype blocks and linkage disequilibrium in the human genome
Quantum probabilities as Bayesian probabilities
Information Filtering: Overview of Issues, Research and Systems
Agile methods in biomedical software development: a multi-site experience report
microRNA target predictions in animals
Canalization of development by microRNAs.
A Supersymmetry Primer
Evaluating similarity measures: a large-scale study in the orkut social network
Metagenomic Analysis of the Human Distal Gut Microbiome
Security in wireless sensor networks
Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase.
Fuzzy Sets and Fuzzy Logic: Theory and Applications
Cognitive radio: brain-empowered wireless communications
Stochastic mechanisms in gene expression.
BioMOBY: an open source biological web services proposal.
The Ontogenesis of Trust
Identifying differentially expressed genes using false discovery rate controlling procedures.
Who should fix this bug?
Large Margin Methods for Structured and Interdependent Output Variables
Inhibited Spontaneous Emission in Solid-State Physics and Electronics
Discovering statistically significant pathways in expression profiling studies.
PGC-1Î±-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes
Organizations: Rational, Natural, and Open Systems
A third approach to gene prediction suggests thousands of additional human transcribed regions.
Historiographic Mapping of Knowledge Domains Literature
RNAi, DRD1, and Histone Methylation Actively Target Developmentally Important Non-CG DNA Methylation in Arabidopsis
Why Do Hubs Tend to Be Essential in Protein Networks?
Profiling Caenorhabditis elegans non-coding RNA expression with a combined microarray
A germline-specific class of small RNAs binds mammalian Piwi proteins
Computational prediction of eukaryotic protein-coding genes.
{The Unified Medical Language System: an informatics research collaboration.}
Learning State Space Trajectories in Recurrent Neural Networks
Persona: A contextualized and personalized Web search
Implicit user modeling for personalized search
A metabolic network in the evolutionary context: multiscale structure and modularity.
Evolutionary Dynamics of Prokaryotic Transcriptional Regulatory Networks
A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action
Scopus database: a review.
ARACNE: an algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context.
Modularity and community structure in networks
Molecular basis for the recognition of primary microRNAs by the Drosha-DGCR8 complex.
Designing and evaluating kalas: A social navigation system for food recipes
Semi-supervised graph clustering: a kernel approach
Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks
Neurons with graded response have collective computational properties like those of two-state neurons
Correlated sequence-signatures as markers of protein-protein interaction.
Context-awareness in wearable and ubiquitous computing
Evaluating visualizations: do expert reviews work?
An insight-based methodology for evaluating bioinformatics visualizations
Efficient Adaptive-Support Association Rule Mining for Recommender Systems
Human factors in visualization research
The evolution of prestige. Freely conferred deference as a mechanism for enhancing the benefits of cultural transmission
Co-citation in the scientific literature: A new measure of the relationship between two documents
Effects of Positive Reputation Systems
Searching with context
Surface reconstruction from unorganized points
Creating creativity: user interfaces for supporting innovation
An Energy Budget for Signaling in the Grey Matter of the Brain
Random Walks on Directed Networks: the Case of PageRank
Z-MAC: a hybrid MAC for wireless sensor networks
microRNAs exhibit high frequency genomic alterations in human cancer.
Object categories and expertise: Is the basic level in the eye of the beholder?
Finding community structure in networks using the eigenvectors of matrices
Understanding experience in interactive systems
The Adapted Mind: Evolutionary Psychology and the Generation of Culture
Using RDF to Describe Networks
The Structure and Dynamics of Networks: (Princeton Studies in Complexity)
Wireless mesh networks: a survey
On the success of empirical studies in the international conference on software engineering
Alloy: a lightweight object modelling notation
Methods in biomedical ontology
Pattern Languages in HCI: A Critical Review
FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes.
Ubiquitous selective constraints in the Drosophila genome revealed by a genome-wide interspecies comparison.
Vygotsky's Educational Theory in Cultural Context (Learning in Doing: Social, Cognitive & Computational Perspectives)
Perspectives on Activity Theory (Learning in Doing: Social, Cognitive and Computational Perspectives)
Identity and Agency in Cultural Worlds
Language Control in the Bilingual Brain
Ant colony optimization for routing and load-balancing: survey and new directions
Fault Injection Techniques and Tools.
User Modeling for Adaptive News Access
An Adaptive System for the Personalized Access to News
Capitalism, Socialism, and Democracy
Analysis of conserved noncoding DNA in Drosophila reveals similar constraints in intergenic and intronic sequences.
Tools for kinetic modeling of biochemical networks
Network Analysis: Methodological Foundations
Hierarchically Classifying Documents Using Very Few Words
A view of 20th and 21st century software engineering
Genomics of the evolutionary process
Possible origins of the complex topographic organization of motor cortex: reduction of a multidimensional space onto a two-dimensional array.
The Ensembl genome database project
Collaborative systems: solving the vocabulary problem
QUORUM SENSING: Cell-to-Cell Communication in Bacteria
"""I'd be overwhelmed, but it's just one more thing to do"": availability and interruption in research management"
The Molecular Biology of Memory Storage: A Dialogue Between Genes and Synapses
Combining docking and molecular dynamic simulations in drug design.
A Descriptive Framework of Workspace Awareness for Real-Time Groupware
The problem with ``awareness'': Introductory remarks on ``awareness in CSCW''
Sequencing genomes from single cells by polymerase cloning
The Myth of the Paperless Office
Meta-design: a manifesto for end-user development
Access and mobility of wireless PDA users
Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae.
The fitness value of information
A vision for the future of genomics research.
An introduction to the Semantic Web for health sciences librarians.
A cautionary perspective on cross-layer design
Evolutionary and physiological importance of hub proteins
A rate-adaptive MAC protocol for multi-Hop wireless networks
Why phishing works
In this issue
Component rank: relative significance rank for software component search
Global software development at siemens: experience from nine projects
Bayesian Hierarchical Clustering
A review of content-based image retrieval systems in medical applicationsâ€”clinical benefits and future directions
Plasma Losses by Fast Electrons in Thin Films
Image completion with structure propagation
A high-resolution map of transcription in the yeast genome.
"On the Importance of ""Who Tagged What"""
Multivariate Calibration
Why do cancers have high aerobic glycolysis?
All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of Proteinsâ€ 
The Control of the False Discovery Rate in Multiple Testing under Dependency
Comprehensive analysis of combinatorial regulation using the transcriptional regulatory network of yeast.
Theory and Practice of Constraint Handling Rules
Helical microtubules of graphitic carbon
The Band Theory of Graphite
Foundations of Systems Biology
Implicit Culture as a Tool for Social Navigation
The Stag Hunt and the Evolution of Social Structure
AN INTEGRATIVE MODEL OF ORGANIZATIONAL TRUST
Physiological time-series analysis using approximate entropy and sample entropy
Revolutions in RNA secondary structure prediction.
Composing monads using coproducts
Fast algorithms for large-scale genome alignment and comparison.
Adaptive protein evolution at the Adh locus in Drosophila
A new measure for functional similarity of gene products based on Gene Ontology
The Xist RNA gene evolved in eutherians by pseudogenization of a protein-coding gene.
Antisense transcription in the mammalian transcriptome.
Characterization of the piRNA Complex from Rat Testes
Positive natural selection in the human lineage.
Supporting Ethnographic Studies of Ubiquitous Computing in the Wild
Unsupervised Named-Entity Extraction from the Web: An Experimental Study
Linear Algebra
Why Hackers Do What They Do: Understanding Motivation and Effort in Free/Open Source Software Projects
Close sequence comparisons are sufficient to identify human cis-regulatory elements.
Experimental quantum teleportation
The Design and Implementation of {FFTW3}
Measurement of qubits
A scheme for efficient quantum computation with linear optics
S Programming
Modern Applied Statistics with S
PhysioBank, PhysioToolkit, and PhysioNet: components of a new research resource for complex physiologic signals.
Unobtrusive Data Collection for Web-Based Social Navigation
Using Social Tagging to Improve Social Navigation
What properties characterize the hub proteins of the protein-protein interaction network of Saccharomyces cerevisiae?
Automated Tag Clustering: Improving search and exploration in the tag space
OverQoS: An Overlay Based Architecture for Enhancing Internet QoS
A service creation environment based on end to end composition of Web services
Resilience Management in Social-ecological Systems: a Working Hypothesis for a Participatory Approach
Computational identification of Drosophila microRNA genes
Combination of text-mining algorithms increases the performance.
Citation Advantage of Open Access Articles
Primate segmental duplications: crucibles of evolution, diversity and disease
The coordination of arm movements: an experimentally confirmed mathematical model
Network thermodynamics and complexity: a transition to relational systems theory.
The Development of Scientific Reasoning Skills
Theory of Superconductivity
Ten-Year Cross-Disciplinary Comparison of the Growth of Open Access and How it Increases Research Citation Impact
A Population-Average, Landmark- and Surface-based (PALS) atlas of human cerebral cortex.
Identifying DNA and protein patterns with statistically significant alignments of multiple sequences.
Cell-free cloning using phi29 DNA polymerase.
Atom-by-atom analysis of global downhill protein folding
Cortical substrates for exploratory decisions in humans
Multiple sequence alignment.
The Power of Events: An Introduction to Complex Event Processing in Distributed Enterprise Systems
Studying plasmid horizontal transfer in situ: a critical review
Motivation, Knowledge Transfer, and Organizational Forms
Top-down signal from prefrontal cortex in executive control of memory retrieval.
Unifying User-based and Item-based Collaborative Filtering Approaches by Similarity Fusion
Using publish/subscribe middleware for mobile systems
On Intelligence
Network motif identification in stochastic networks
Behavioural ecology : an evolutionary approach
Evolving 3D Morphology and Behavior by Competition
Unto others : the evolution and psychology of unselfish behavior
Natural selection and population dynamics
The Sources of Innovation
Dynamic Topic Models
Topic Modeling: Beyond Bag-of-Words
Inflationary universe: A possible solution to the horizon and flatness problems
"Frequencies Contributing to Functional Connectivity in the Cerebral Cortex in ""Resting-state"" Data"
Design and development of virtual reality based perceptual-motor rehabilitation scenarios
Metadata Interoperability and Standardization - A Study of Methodology Part I: Achieving Interoperability at the Schema Level
Metadata Interoperability and Standardization - A Study of Methodology Part II: Achieving Interoperability at the Record and Repository Levels
"""Alone together?"": exploring the social dynamics of massively multiplayer online games"
Variability, compensation and homeostasis in neuron and network function
Talk to me: foundations for successful individual-group interactions in online communities
Motivating participation by displaying the value of contribution
Motivation and barriers to participation in virtual knowledge-sharing communities of practice
Decoding mental states from brain activity in humans
Structure-based assembly of protein complexes in yeast.
MMTSB Tool Set: enhanced sampling and multiscale modeling methods for applications in structural biology.
Design of a Novel Globular Protein Fold with Atomic-Level Accuracy
Optimization of mutual information for multiresolution image registration
Qualitative Research in Information Systems
Organizational Memory
Workflow mining: a survey of issues and approaches
Metrics and Laws of Software Evolution - The Nineties View
Controlling the false discovery rate in behavior genetics research.
Searching for expertise in social networks: a simulation of potential strategies
Metagenomic Analysis of Coastal RNA Virus Communities
Recognition and participation in a virtual community
Extraordinary optical transmission through sub-wavelength hole arrays
The Singularity Is Near: When Humans Transcend Biology
Data Mining: Concepts and Techniques, Second Edition (The Morgan Kaufmann Series in Data Management Systems)
Library and information science: Skills for twenty-first century professionals
Institutional repositories: review and an information systems perspective
Mitigating routing misbehavior in mobile ad hoc networks
A taxonomy of DDoS attack and DDoS defense mechanisms
UIMA: an architectural approach to unstructured information processing in the corporate research environment
Robust relational parsing over biomedical literature: extracting inhibit relations.
Accounting for taste: using profile similarity to improve recommender systems
Influence: Science and Practice (4th Edition)
Expertise browser: a quantitative approach to identifying expertise
EM Algorithms for {PCA} and {SPCA}
{Discovering Relations among Named Entities from Large Corpora}
{Dependency tree kernels for relation extraction}
A critical review of PASBio's argument structures for biomedical verbs
Weighting for unequal selection probabilities in multilevel models
The identification of 100 ecological questions of high policy relevance in the UK
Costly Punishment Across Human Societies
Optimizing Network Virtualization in Xen
Algorithms and Applications for Approximate Nonnegative Matrix Factorization
Sufficient dimensionality reduction
Projected Gradient Methods For Non-Negative Matrix Factorization
Fast maximum margin matrix factorization for collaborative prediction
Eigenfaces for recognition
A sensorimotor account of vision and visual consciousness.
Gatewatching: Collaborative Online News Production (Digital Formations)
Information Retrieval in Folksonomies: Search and Ranking
Swarm Intelligence (The Morgan Kaufmann Series in Evolutionary Computation)
Ant Colony Optimization
On the number of segregating sites in genetical models without recombination.
The introduction of a shared interactive surface into a communal space
Mathematical Foundations of Quantum Mechanics
Bipartite structure of all complex networks
Exploring Social Annotations for the Semantic Web
From mirroring to guiding: a review of the state of the art technology for supporting collaborative learning
A genetic signature of interspecies variations in gene expression.
Evaluating Mobility Pattern Space Routing for DTNs
Cognitive networks
The Clash of Civilizations and the Remaking of World Order
The neural bases of momentary lapses in attention.
Optimal decision making and the anterior cingulate cortex
Handbook of Usability Testing: How to Plan, Design, and Conduct Effective Tests
Role-based access control models
Situated Language and Learning: A Critique of Traditional Schooling
Properties of highly clustered networks
Understanding Free/Open Source Software Development Processes
Theory-based Bayesian models of inductive learning and reasoning.
A knowledge plane for the internet
In Defense of the Eight-Point Algorithm
Assessing Information Quality of A Community-Based Encyclopedia
Intrinsic Disorder is a Common Feature of Hub Proteins from Four Eukaryotic Interactomes
Evaluation of different biological data and computational classification methods for use in protein interaction prediction
Choosing negative examples for the prediction of protein-protein interactions
Three options for citation tracking: Google Scholar, Scopus and Web of Science.
PISCES: recent improvements to a PDB sequence culling server
Geography-informed energy conservation for Ad Hoc routing
Real-time obstacle avoidance for manipulators and mobile robots
Host-parasite coevolutionary conflict between Arabidopsis and downy mildew.
Stone Age Economics
The role of seed dispersal in the natural regeneration of rain forest after strip-cutting in the Peruvian Amazon
Abundance-occupancy relationships
Acceleration of global warming due to carbon-cycle feedbacks in a coupled climate model
The elements of computer credibility
On-line trust: concepts, evolving themes, a model
Ultracold atomic gases in optical lattices: Mimicking condensed matter physics and beyond
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences.
Improved scoring of functional groups from gene expression data by decorrelating GO graph structure
Climate Extremes: Observations, Modeling, and Impacts
Tropical deforestation and climate change
Mathematical and computational challenges in population biology and ecosystems science
Positive feedbacks among forest fragmentation, drought, and climate change in the Amazon
Environmental warming alters food-web structure and ecosystem function
Habitat fragmentation and native bees: a premature verdict?
A global biome model based on plant physiology and dominance, soil properties and climate
What's wrong with Bonferroni adjustments
Robust locally weighted regression and smoothing scatterplots
Bayesian multisensory integration and cross-modal spatial links.
The role of trade-offs in biodiversity conservation planning: linking local management, regional planning and global conservation efforts.
Space-Time Approach to Non-Relativistic Quantum Mechanics
Organizational Innovation: A Meta-Analysis of Effects of Determinants and Moderators
An Empirical Study of Open-Source and Closed-Source Software Products
Spike timing-dependent plasticity of neural circuits.
A critical look at technological innovation typology and innovativeness terminology: a literature review
Segmental duplications and copy-number variation in the human genome.
Spike Timing-Dependent Plasticity: From Synapse to Perception
"Metadata aggregation and ""automated digital libraries"": A retrospective on the NSDL experience"
Spike times make sense
Visualization-based information retrieval on the Web
Citances: Citation Sentences for Semantic Analysis of Bioscience Text
LibX â€“ a Firefox extension for enhanced library access
{A Structural Approach to Assessing Innovation: Construct Development of Innovation Locus, Type, and Characteristics}
Accurate methods for the statistics of surprise and coincidence
From Levinthal to pathways to funnels.
Pathway analysis using random forests classification and regression
Stability-based validation of clustering solutions
Online Learning with kernels
Bayesian decision theory in sensorimotor control.
Bayesian theories of conditioning in a changing world.
Linear Programming: Foundations and Extensions
Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution
New Monte Carlo algorithms for protein folding
A new approach to protein fold recognition
Linear Programming and Extensions
A New Polynomial-Time Algorithm for Linear Programming
Twilight zone of protein sequence alignments
{Monte Carlo Methods in Statistical Physics}
Bayesian coestimation of phylogeny and sequence alignment
PALS: peer-to-peer adaptive layered streaming
PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations.
Algebraic Topology and Distributed Computing: A Primer
Shadows of the Mind : A Search for the Missing Science of Consciousness
MicroRNA genes are transcribed by RNA polymerase II
Summarizing scientific articles: experiments with relevance and rhetorical status
Would You Be Happier If You Were Richer? A Focusing Illusion
A Distinct Small RNA Pathway Silences Selfish Genetic Elements in the Germline.
A Collaborative Web Browsing System for Multiple Mobile Users
What does Batman think about SpongeBob? Children's understanding of the fantasy/fantasy distinction
Filtering via Simulation: Auxiliary Particle Filters
3D object modeling and recognition using affine-invariant patches and multi-view spatial constraints
Integrating collaborative tagging and emergent semantics for image retrieval
Content-based multimedia information retrieval: State of the art and challenges
Nutrition and cancer: A review of the evidence for an anti-cancer diet
The statistical-thermodynamic basis for computation of binding affinities: a critical review
Shape and motion from image streams under orthography: a factorization method
Protein Misfolding, Functional Amyloid, and Human Disease
Co-authorship networks in the digital library research community
Mapping the structure of science through usage
Postmodern geographies : the reassertion of space in critical social theory
{A}pproximate {B}ayesian computation in population genetics.
Phylogenetic comparative analysis: {A} modeling approach for adaptive evolution
The Origin of Species
Statistical tests of neutrality of mutations.
Punctuated {E}quilibria the {T}empo and {M}ode of {E}volution {R}econsidered
{G}enerating samples under a {W}right-{F}isher neutral model of genetic variation.
Detecting a local signature of genetic hitchhiking along a recombining chromosome.
The origins of genome complexity
How plant life-history and ecological traits relate to species rarity and commonness at varying spatial scales
The breeding structure of a tropical keystone plant resource
Distinguishing migration from isolation: {A} {M}arkov chain {M}onte {C}arlo approach
The signature of positive selection at randomly chosen loci
{I}nferring coalescence times from {DNA} sequence data.
Molecular phylogenetics: {S}tate-of-the-art methods for looking into the past
Emergence of cooperation and evolutionary stability in finite populations
Recognizing spoken words: the neighborhood activation model.
Geospatial Ontology Development and Semantic Analytics
THE HUMAN VISUAL CORTEX
How and what university students learn through online and face-to-face discussion: conceptions, intentions and approaches
A joint model of regulatory and metabolic networks
{Genomic signatures of positive selection in humans and the limits of outlier approaches}
A gene-centered C. elegans protein-DNA interaction network.
Weblog success: Exploring the role of technology
The variability of human {BOLD} hemodynamic responses
Selective averaging of rapidly presented individual trials using f{MRI}
Spatial normalization of 3{D} brain images using deformable models
Improved assessment of significant activation in functional magnetic resonance imaging (f{MRI}): use of a cluster-size threshold
Assessing the significance of focal activations using their spatial extent
Analysis of f{MRI} time-series revisited
Statistical parametric maps in functional imaging: a general linear approach
Spatial registration and normalization of images
Movement-related effects in f{MRI} time-series
Event-related f{MRI}: characterizing differential responses
Nonlinear event-related responses in f{MRI}
How many subjects constitute a study?
To smooth or not to smooth? {B}ias and efficiency in f{MRI} time-series analysis
Classical and {B}ayesian inference in neuroimaging: theory
Functional connectivity in the resting brain: a network analysis of the default mode hypothesis
The {R}ician distribution of noisy {MRI} data
Searching for a baseline: functional imaging and the resting human brain
Evaluating causal relations in neural systems: Granger causality, directed transfer function and statistical assessment of significance
The architecture of cognitive control in the human prefrontal cortex
Comparing dynamic causal models
The Brainweb: phase synchronization and large-scale integration
Bug isolation via remote program sampling
Norm-based face encoding by single neurons in the monkey inferotemporal cortex
Intracellular pattern recognition receptors in the host response
Structural diversity of domain superfamilies in the CATH database.
FRET imaging
Social Modulation of Pain as Evidence for Empathy in Mice
The Role of Working Memory in Visual Selective Attention
Comparative genomics of Drosophila and human core promoters
Intelligent distributed surveillance systems: a review
Cooperative mobile robotics: antecedents and directions
Civilization and Its Discontents
The Handbook of Blended Learning : Global Perspectives, Local Designs
Excitatory and Feed-Forward Inhibitory Hippocampal Synapses Work Synergistically as an Adaptive Filter of Natural Spike Trains.
Bayesian parameter estimation via variational methods
Prototype-referenced shape encoding revealed by high-level aftereffects.
Efficient algorithms for detecting signaling pathways in protein interaction networks.
The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes.
Parameter estimation for text analysis
Identification of Genome-Scale Metabolic Network Models Using Experimentally Measured Flux Profiles
{T}axonomic names, metadata, and the {S}emantic {W}eb
``Is this document relevant?{\$\ldots\$}probably'': a survey of probabilistic models in information retrieval
Doing Gender
Models of stochastic gene expression
Believe it or not: Factors influencing credibility on the Web
Communicating trustworthiness and building trust in interorganizational virtual organizations
Judgment of information quality and cognitive authority in the Web
Theory of protein folding
Empathy and online interpersonal trust: A fragile relationship
College student web use, perceptions of information credibility, and verification behavior
Empirical research in on-line trust: a review and critical assessment
Trust breaks down in electronic contexts but can be repaired by some initial face-to-face contact
Keepinâ€™ It Real: Pushing the Desktop Metaphor with Physics, Piles and the Pen
Preservation of duplicate genes by complementary, degenerative mutations.
A greedy algorithm for aligning DNA sequences.
Deletional bias and the evolution of bacterial genomes.
â€˜The less I trust, the less I contribute (or not)?â€™ The effects of trust, accountability and self-monitoring in social dilemmas
A Review of the Integrate-and-fire Neuron Model: I. Homogeneous Synaptic Input.
Graphical perception: Theory, experimentation, and application to the development of graphical methods
Efficient Graph-Based Image Segmentation
Adaptive rejection sampling for Gibbs sampling
Multi-Label Text Classification with a Mixture Model Trained by EM
Aspect-Oriented Programming Is Quantification and Obliviousness
Modularisation and Composition of Aspectual Requirements
Separating features in source code: {An} exploratory study
Dynamic and Selective Combination of Extensions in Component-based Applications
{Modular Software Design with Crosscutting Interfaces}
Nonlinear Time Series Analysis
Web Metasearch: Rank vs. Score Based Rank Aggregation Methods
Rarest First and Choke Algorithms Are Enough
A statistical approach for array CGH data analysis.
Identifying strategies to improve access to credible and relevant information for public health professionals: a qualitative study.
Fast exact inference with a factored model for natural language parsing
MicroRNA Expression in Zebrafish Embryonic Development
Dynamic capabilities and strategic management
Dynamic capabilities: what are they?
Semantic annotation for knowledge management: Requirements and a survey of the state of the art
Core transcriptional regulatory circuitry in human hepatocytes.
Microeconometrics: Methods and Applications
Composing contracts: an adventure in financial engineering (functional pearl)
Data Sharing: How Much Doesn't Get Submitted to GenBank?
Link prediction approach to collaborative filtering
Firm Resources and Sustained Competitive Advantage
A fast learning algorithm for deep belief nets.
Manipulation of Voting Schemes: A General Result
Positive selection, relaxation, and acceleration in the evolution of the human and chimp genome.
Structure validation by Calpha geometry: &phis;,psi and Cbeta deviation
Ribosomal {ITS} sequences and plant phylogenetic inference
Globally distributed object identification for biological knowledgebases
Building large trees by combining phylogenetic information: a complete phylogeny of the extant {C}arnivora ({M}ammalia).
Assessment of the accuracy of matrix representation with parsimony analysis supertree construction.
Cognitive Architecture and Instructional Design
The Semantic Web Revisited
Absorptive Capacity: A New Perspective on Learning and Innovation
Locally Weighted Learning
Streaming video over the Internet: approaches and directions
Integrons: agents of bacterial evolution
Social evolution theory for microorganisms
A high-performance brainÃ¢Â€Â“computer interface
Neuronal ensemble control of prosthetic devices by a human with tetraplegia
Global Biodiversity Conservation Priorities
Reconfigurable Computing for Digital Signal Processing: A Survey
Semiotic Dynamics for Embodied Agents
Multi-Frame Correspondence Estimation Using Subspace Constraints
Self-determination theory and the facilitation of intrinsic motivation, social development, and well-being.
Aligning Simulation Models: A Case Study and Results
Vehicles, Experiments in Synthetic Psychology
Algorithmic Information Theory
Ant System: Optimization by a colony of cooperating agents
Hidden Order: How Adaptation Builds Complexity
On complexity and emergence
A Framework for Semantic Web Services Discovery
Characterizing Unstructured Overlay Topologies in Modern P2P File-Sharing Systems
Network structure, self-organization, and the growth of international collaboration in science
The Interpretation of Dreams
Alternative Splicing: New Insights from Global Analyses
Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm.
Building a dictionary for genomes: Identification of presumptive regulatory sites by statistical analysis
Functional connectivity in the motor cortex of resting human brain using echo-planar MRI.
Global mapping of pharmacological space.
Laser phase and frequency stabilization using an optical resonator
Improved annotation of the blogosphere via autotagging and hierarchical clustering
Evolutionary games on graphs
Optimal Ordered Problem Solver
Gambling in a rigged casino: the adversarial multi-armed bandit problem
The Long Tail: Why the Future of Business Is Selling Less of More
A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes
Group Formation in Large Social Networks: Membership, Growth, and Evolution
Categorization and representation of physics problems by experts and novices
The Physics of Information
An alternative to the hand searching gold standard: validating methodological search filters using relative recall
Creating and managing a high-performance knowledge-sharing network: the Toyota case
Standards for systems biology
Highly parallel genomic assays
A Fast and High Quality Multilevel Scheme for Partitioning Irregular Graphs
Hierarchical Mixtures of Experts and the EM Algorithm
Elementary gates for quantum computation
Information technology and systems justification: A review for research and applications
Evaluating authoritative sources using social networks: an insight from Wikipedia
An introduction to entanglement measures
Serving Services in Web 2.0
Global Water Resources: Vulnerability from Climate Change and Population Growth
Global Consequences of Land Use
The mutual information: Detecting and evaluating dependencies between variables
Software maintenance and evolution: a roadmap
Design principles of molecular networks revealed by global comparisons and composite motifs
Shuffling of cis-regulatory elements is a pervasive feature of the vertebrate lineage
A genomic code for nucleosome positioning
Systematic mapping of genetic interactions in Caenorhabditis elegans identifies common modifiers of diverse signaling pathways
Publication, Publication
The Phoenix Rising: Emergent models of instructional design
Distance Education Trends: Integrating new technologies to foster student interaction and collaboration
Graphene-based composite materials
Genome-Wide Survey for Biologically Functional Pseudogenes
Grading quality of evidence and strength of recommendations.
Mathematical Methods of Classical Mechanics (Graduate Texts in Mathematics)
Scholarly work and the shaping of digital access
Ecological networks and their fragility.
Evolution of cis-regulatory sequence and function in Diptera
Probabilistic independent component analysis for functional magnetic resonance imaging.
Extensive low-affinity transcriptional interactions in the yeast genome.
Intrinsic disorder in cell-signaling and cancer-associated proteins.
Graph mining: Laws, generators, and algorithms
Versatile low power media access for wireless sensor networks
An adaptive algorithm for learning changes in user interests
{The evolutionary position of nematodes}
{TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing}
{Genomic clocks and evolutionary timescales}
{Recent segmental duplications in the human genome}
{Likelihood-based tests of topologies in phylogenetics}
An energy-efficient MAC protocol for wireless sensor networks
Maintaining mental models: a study of developer work habits
{The rapid generation of mutation data matrices from protein sequences}
{Models of molecular evolution and phylogeny}
{Phylogenetic methods come of age: testing hypotheses in an evolutionary context}
{Synonymous and nonsynonymous rate variation in nuclear genes of mammals}
A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase.
A strategy for extracting and analyzing large-scale quantitative epistatic interaction data.
Path integration and the neural basis of the 'cognitive map'
The Fifth Discipline: The Art & Practice of The Learning Organization
Sharing Networked Resources with Brokered Leases
Deterministic Coupling of Single Quantum Dots to Single Nanocavity Modes
A homology theory for spanning trees of a graph
Interactive Computation: The New Paradigm
A default mode of brain function.
Reading the entrails of chickens: molecular timescales of evolution and the illusion of precision
Proteinâ€“Protein Interactions More Conserved within Species than across Species
Imaging Neuronal Subsets in Transgenic Mice Expressing Multiple Spectral Variants of GFP
General Relativity in Electrical Engineering
A web-based kernel function for measuring the similarity of short text snippets
Mesh networks: commodity multihop ad hoc networks
Interactive public ambient displays: transitioning from implicit to explicit, public to personal, interaction with multiple users
Can you see what i hear?: the design and evaluation of a peripheral sound display for the deaf
Ambient Displays: Turning Architectural Space into an Interface between People and Digital Information
PAGE: Parametric Analysis of Gene Set Enrichment
Pathway information for systems biology.
The relaxed complex method: Accommodating receptor flexibility for drug design with an improved scoring scheme.
Vacuum Rabi splitting with a single quantum dot in a photonic crystal nanocavity
Onomi: Social Bookmarking on a Corporate Intranet
An Organizational Learning Framework: From Intuition to Institution
Layered depth images
The effect of intensive treatment of diabetes on the development and progression of long-term complications in insulin-dependent diabetes mellitus. The Diabetes Control and Complications Trial Research Group.
cloudalicious: folksonomy over time
A simple introduction to maximum entropy models for natural language processing
Arms races between and within species
Bellerophon: A program to detect chimeric sequences in multiple sequence alignments
Quorum Sensing in Bacteria
Learning systems of concepts with an infinite relational model.
New directions in biomedical text annotation: definitions, guidelines and corpus construction
Finding function: evaluation methods for functional genomic data
Spawn: a distributed computational economy
Complete functional characterization of sensory neurons by system identification.
Rabi Oscillations in a Large Josephson-Junction Qubit
Reputation helps solve the `tragedy of the commons'
Ultrasound image segmentation: a survey
Unifying Logical and Statistical {AI}
Finite Mixture Models (Wiley Series in Probability and Statistics)
Enterprise Architecture at Work: Modelling, Communication and Analysis
New Monte Carlo technique for studying phase transitions
The weighted histogram analysis method for free-energy calculations on biomolecules. I. The method
Harnessing Nonlinearity: Predicting Chaotic Systems and Saving Energy in Wireless Communication
Midbrain dopamine neurons encode decisions for future action
Multicanonical ensemble: A new approach to simulate first-order phase transitions
Computational identification of transcriptional regulatory elements in DNA sequence
Social Bookmarking, Folksonomies, and Web 2.0 Tools
Comparative evaluation of reverse engineering gene regulatory networks with relevance networks, graphical gaussian models and bayesian networks
Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data
A direct comparison of protein interaction confidence assignment schemes
Model Selection and Multimodel Inference: A Practical Information-Theoretic Approach.
Introductory Statistics with R
Pfam: a comprehensive database of protein domain families based on seed alignments.
Communities of practice
Design Science in Information Systems Research
Software engineering and middleware: a roadmap
Architectural Blueprints---The ``4+1'' View Model of Software Architecture
Weaving together requirements and architectures
{Automatic clustering of orthologs and inparalogs shared by multiple proteomes}
{MotifCut: regulatory motifs finding with maximum density subgraphs}
{Apples to apples: improving the performance of motif finders and their significance analysis in the Twilight Zone}
{Informative priors based on transcription factor structural class improve de novo motif discovery}
{On counting position weight matrix matches in a sequence, with application to discriminative motif finding}
Agile Modeling: Effective Practices for Extreme Programming and the Unified Process
Context-sensitive information retrieval using implicit feedback
Efficient Global Optimization of Expensive Black-Box Functions
Cells on chips
Developing optofluidic technology through the fusion of microfluidics and optics
The origins and the future of microfluidics
Generalized iterative scaling for log-linear models
Inverted files for text search engines
Reducing the Dimensionality of Data with Neural Networks
Advances in flux balance analysis.
Quantum Mechanics helps in searching for a needle in a haystack
Natural selection on gene expression.
Tradeoffs in displaying peripheral information
Concerted and birth-and-death evolution of multigene families.
Protein-ligand docking: current status and future challenges.
Principal components analysis corrects for stratification in genome-wide association studies
Centibots: Very large scale distributed robotic teams
Theory for the development of neuron selectivity: orientation specificity and binocular interaction in visual cortex
Enterprise Ontology: Theory and Methodology
A top-level ontology of functions and its application in the Open Biomedical Ontologies
Finding motifs from all sequences with and without binding sites.
HubMed: a web-based biomedical literature search interface
The functions of animal microRNAs
An Abundant Class of Tiny RNAs with Probable Regulatory Roles in Caenorhabditis elegans
Trans-splicing and polyadenylation of let-7 microRNA primary transcripts.
Cascade models of synaptically stored memories.
New theoretical approaches for human-computer interaction
Knowledge flows within multinational corporations
Intrinsically disordered protein.
Copy number variation: new insights in genome diversity.
Decoherence, the measurement problem, and interpretations of quantum mechanics
Spintronics: Fundamentals and applications
Scaling, universality, and renormalization: Three pillars of modern critical phenomena
Predicting protein druggability
Bayesian inference of character evolution
Potential applications and pitfalls of bayesian inference of phylogeny
A general method for numerically simulating the stochastic time evolution of coupled chemical reactions
Web Page Recommender System based on Folksonomy Mining for ITNG &#146;06 Submissions
A family of conserved noncoding elements derived from an ancient transposable element
A tutorial on cross-layer optimization in wireless networks
Named entity recognition through classifier combination
Interactive graph cuts for optimal boundary &amp; region segmentation of objects in N-D images
Partial constraint satisfaction
More than the sum of its members: challenges for group recommender systems
The holographic principle
Manipulating quantum entanglement with atoms and photons in a cavity
Quantum computation and Shor's factoring algorithm
Higher Topos Theory
Coherence in Spontaneous Radiation Processes
Host-Microbe Interactions: Shaping the Evolution of the Plant Immune Response
Discovering Frequent Closed Itemsets for Association Rules
Jackknife, Bootstrap and Other Resampling Methods in Regression Analysis
Behavior planning for character animation
A Test of Neutral Molecular Evolution Based on Nucleotide Data
When Less Is More: Gene Loss as an Engine of Evolutionary Change
"Where Everybody Knows Your (Screen) Name: Online Games as ""Third Places"""
Exact indexing of dynamic time warping
Aligning Sentences in Parallel Corpora
Annotation and Navigation in Semantic Wikis
Drug research: myths, hype and reality.
The merits of neutral theory
Evolution of cooperation by multilevel selection
Why do we still use stepwise modelling in ecology and behaviour?
{Integrating quantitative and qualitative research: how is it done?}
Can the common brain parasite, Toxoplasma gondii, influence human culture?
Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster.
Memory--a century of consolidation.
Beyond Culture
Adaptive Fraud Detection
Off the Beaten Tracks: Exploring Three Aspects of Web Navigation
Quantitative evaluation of software quality
Display time as implicit feedback: understanding task effects
The influence of recombination on human genetic diversity
Metamaterials and Negative Refractive Index
Experimental Verification of a Negative Index of Refraction
Frames, Biases, and Rational Decision-Making in the Human Brain
Transgeneration memory of stress in plants
Markov Decision Processes: Discrete Stochastic Dynamic Programming
Automatic document classification of biological literature
UniFrac--an online tool for comparing microbial community diversity in a phylogenetic context.
Yeast two-hybrid contributions to interactome mapping
Association of anxiety-related traits with a polymorphism in the serotonin transporter gene regulatory region.
Interacting with Paper on the DigitalDesk
Improving Tag-Clouds as Visual Information Retrieval Interfaces
The Arithmetic of Elliptic Curves
Improving Web Search Ranking by Incorporating User Behavior Information
Learning User Interaction Models for Predicting Web Search Result Preferences
How default is the default mode of brain function?Further evidence from intrinsic BOLD signal fluctuations
Functional and effective connectivity in neuroimaging: A synthesis
Interregional connectivity to primary motor cortex revealed using MRI resting state images.
A Probabilistic Framework for Semi-Supervised Clustering
{Hypertext Transfer Protocol -- HTTP/1.1}
Serotonin transporter genetic variation and the response of the human amygdala.
Roundup: a multi-genome repository of orthologs and evolutionary distances
Centrality and Network flow
A search engine for 3D models
Explanation and understanding
"Microbial diversity in the deep sea and the underexplored ""rare biosphere""."
{A model for web services discovery with QoS}
The Urban Revolution
{L}ucas-{K}anade 20 years on: a unifying framework: part 4
{L}ucas-{K}anade 20 years on: a unifying framework
Organizational Culture
Non-rigid image registration: theory and practice
{An overview of the KL-ONE knowledge representation system}
Improving generalization with active learning
Nearest Neighbor Pattern Classification
{Extending Fitts' Law to Two-Dimensional Tasks}
Artificial Life Meets Entertainment: Life-like Autonomous Agents
Self-Organizing Semantic Maps
Google's PageRank and Beyond: The Science of Search Engine Rankings
Protein structure prediction.
dbSNP: the NCBI database of genetic variation
W<sup>4</sup>: real-time surveillance of people and their activities
Distributed Data Mining in Peer-to-Peer Networks
Google's MapReduce Programming Model -- Revisited
LexRank: Graph-based Lexical Centrality as Salience in Text Summarization
Spike-timing-dependent synaptic modification induced by natural spike trains.
Controlling Electromagnetic Fields
Optical Conformal Mapping
Text mining of full-text journal articles combined with gene expression analysis reveals a relationship between sphingosine-1-phosphate and invasiveness of a glioblastoma cell line.
Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes.
Robust inference of positive selection from recombining coding sequences.
Interrogating a High-Density SNP Map for Signatures of Natural Selection
CO-EVOLUTION OF NEOCORTEX SIZE, GROUP SIZE AND LANGUAGE IN HUMANS
Combining Linguistic and Statistical Analysis to Extract Relations from Web Documents
Structural kinetic modeling of metabolic networks
How reliable are empirical genomic scans for selective sweeps?
Matrix formalism to describe functional states of transcriptional regulatory systems.
Emerging standards for wireless mesh technology
WikiRelate! Computing Semantic Relatedness Using Wikipedia
Overcoming the Brittleness Bottleneck using Wikipedia: Enhancing Text Categorization with Encyclopedic Knowledge
Power/Knowledge: Selected Interviews and Other Writings, 1972-1977
High-resolution computational models of genome binding events.
How does DNA sequence motif discovery work?
Novelty Detection: A Review - Part 1: Statistical Approaches
Detecting the limits of regulatory element conservation and divergence estimation using pairwise and multiple alignments
The contrast sensitivity of retinal ganglion cells of the cat.
A Comparison and Evaluation of Multi-View Stereo Reconstruction Algorithms
To have and to hold: exploring the personal archive
The problem of information overload in business organisations: a review of the literature
Emerging research methods for understanding mobile technology use
The evolution of cooperation and altruism â€“ a general framework and a classification of models
Finite-time Analysis of the Multiarmed Bandit Problem
Constrained K-means Clustering with Background Knowledge
Public health, GIS, and the internet.
Minimal test collections for retrieval evaluation
What makes a query difficult?
POLYPHONET: an advanced social network extraction system from the web
Semantic analytics on social networks: experiences in addressing the problem of conflict of interest detection
Automatic identification of user interest for personalized search
Complex patterns of copy number variation at sites of segmental duplications: an important category of structural variation in the human genome.
Highly specific gene silencing by artificial microRNAs in Arabidopsis.
Revealing the world of RNA interference.
Autonomic Live Adaptation of Virtual Computational Environments in a Multi-Domain Infrastructure
Usability Inspection Methods
Wikis, blogs and podcasts: a new generation of Web-based tools for virtual collaborative clinical practice and education
Representing Contextualized Information in the NSDL
Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction assays.
Unfolded Proteins and Protein Folding Studied by NMR
Discrete Choice Methods with Simulation
Handbook of Evolutionary Computation
Cancer genes and the pathways they control.
The neural basis of altruistic punishment
Mining frequent stem patterns from unaligned RNA sequences.
Reward-related cortical inputs define a large striatal region in primates that interface with associative cortical connections, providing a substrate for incentive-based learning.
Ideas and Improvements for Semantic Wikis
Towards a Semantic Wiki Experience - Desktop Integration and Interactivity in WikSAR
An RNA gene expressed during cortical development evolved rapidly in humans
Archaea predominate among ammonia-oxidizing prokaryotes in soils
Driven coherent oscillations of a single electron spin in a quantum dot
Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors.
Significance of Specimen Databases from Taxonomic Revisions for Estimating and Mapping the Global Species Diversity of Invertebrates and Repatriating Reliable Specimen Data
Analysis of promoter regions of co-expressed genes identified by microarray analysis
Geospatial Semantic Web: Architecture of Ontologies
Accelerating Collaboration With Social Tools
CONTRAfold: RNA secondary structure prediction without physics-based models
Alu elements within human mRNAs are probable microRNA targets
Comprehensive splice-site analysis using comparative genomics.
Visual objects in context.
Emotion, decision making and the orbitofrontal cortex.
Control of goal-directed and stimulus-driven attention in the brain.
Institutions, Institutional Change and Economic Performance (Political Economy of Institutions and Decisions)
A Behavioral Approach to the Rational Choice Theory of Collective Action
The Evolution of Adaptive Immune Systems
Discrete mathematics: methods and challenges
Staying open to interpretation: engaging multiple meanings in design and evaluation
A nonlinear model of information-seeking behavior
Multimedia Learning
{Social implications of the internet}
Learning Factor Graphs in Polynomial Time and Sample Complexity
Warming and Earlier Spring Increase Western U.S. Forest Wildfire Activity
Evolution of primate gene expression.
Collective Multi-Label Classification
The Unbearable Likeness of Being Digital: The Persistence of Nonverbal Social Norms in Online Virtual Environments
BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments
Inflammatory bowel disease.
Protein classification using ontology classification
A unified formulation of the constant temperature molecular dynamics methods
The art of molecular dynamics simulation
Refining initial points for {K}-means clustering
Computational identification of microRNAs and their targets.
A Direct Empirical Proof of the Existence of Dark Matter
Towards synthesis of a minimal cell
Small RNAs just got bigger: Piwi-interacting RNAs (piRNAs) in mammalian testes
Extensive post-transcriptional regulation of microRNAs and its implications for cancer
A research agenda for distributed software development
MicroRNA promoter element discovery in Arabidopsis
Stochastic simulation of chemical reactions with spatial resolution and single molecule detail
Perfect seed pairing is not a generally reliable predictor for miRNA-target interactions.
Space and stochasticity in population dynamics
Transcriptional outputs of the Caenorhabditis elegans forkhead protein DAF-16.
The fractal nature of nature: power laws, ecological complexity and biodiversity
Insights into Proteinâ€“Protein Interfaces using a Bayesian Network Prediction Method
An Argument for Basic Emotions
Affective neuroscience and psychophysiology: toward a synthesis.
Spatial scaling of microbial biodiversity
How to read a paper : the basics of evidence-based medicine
From diffusion tractography to quantitative white matter tract measures: a reproducibility study
Artificial neural networks: A tutorial
Loss of recent memory after bilateral hippocampal lesions
Cognitive load theory: implications of cognitive load theory on the design of learning
Quantifying Self-Organization with Optimal Predictors
{Causal Architecture, Complexity, and Self-Organization in Time Series and Cellular Automata}
A framework for asynchronous change awareness in collaborative documents and workspaces
Enhancing and confirming the specificity of RNAi experiments
Authentication in Distributed Systems: Theory and Practice
Social navigation in web lectures
Multi-channel link-level measurements in 802.11 mesh networks
Lessons from Nature: microRNA-based shRNA libraries
Parochial altruism in humans
A probabilistic approach to spatiotemporal theme pattern mining on weblogs
Identifying comparative sentences in text documents
HT06, tagging paper, taxonomy, Flickr, academic article, to read
A review of cardiac image registration methods.
Learning Hidden Markov Model Structure for Information Extraction
Revealing posttranscriptional regulatory elements through network-level conservation.
Intron length evolution in Drosophila.
The difference between â€œsignificantâ€ and â€œnot significantâ€ is not itself statistically significant
Learning induces long-term potentiation in the hippocampus.
The changing usage of a mature campus-wide wireless network
From Wikipedia to the classroom: exploring online publication and learning
Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo.
Computational methods for transcriptional regulation.
Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae.
Modeling protein conformational ensembles: From missing loops to equilibrium fluctuations
An architecture for privacy-sensitive ubiquitous computing
Symphony: Distributed hashing in a small world
A kernel view of the dimensionality reduction of manifolds
Incremental learning with support vector machines
ZINC âˆ’ A Free Database of Commercially Available Compounds for Virtual Screening
The minimum description length principle in coding and modeling
The Fastest and Shortest Algorithm for All Well-Defined Problems
Why Isn't Everyone a Bayesian?
Probabilistic roadmaps for path planning in high-dimensional configuration spaces
Whole-Cell Recordings in Freely Moving Rats
The mistaken axioms of wireless-network research
Why information security is hard - an economic perspective
Inside Bureaucracy
Mining newsgroups using networks arising from social behavior
A Molecular View of Microbial Diversity and the Biosphere
Taking Preferences Seriously: A Liberal Theory of International Politics
Rationalist Explanations for War
An introduction to ROC analysis
Inferring Activities from Interactions with Objects
Problem Solving and the Use of Math in Physics Courses
Granger Causality: Basic Theory and Application to Neuroscience
{{I}dentification of genetic networks from a small number of gene expression patterns under the {B}oolean network model}
Modeling transcriptional regulatory networks.
Chance and necessity: the evolution of morphological complexity and diversity
Modeling gene expression with differential equations
The chemical {L}angevin equation.
Amelioration of bacterial genomes: rates of change and exchange
Selfish operons: horizontal transfer may drive the evolution of gene clusters
{{R}eveal, a general reverse engineering algorithm for inference of genetic network architectures}
Gene{M}ark.hmm: new solutions for gene finding
Conservation of {DNA} regulatory motifs and discovery of new motifs in microbial genomes
Comparative gene prediction in human and mouse
Stochastic chemical kinetics and the quasi-steady-state assumption: {A}pplication to the {G}illespie algorithm
In silico simulation of biological network dynamics.
Statistical {A}nalysis of {G}ene {E}xpression {M}icroarray {D}ata
The {COG} database: a tool for genome-scale analysis of protein functions and evolution
{Relationships between Open Source Software Companies and Communities: Observations from Nordic Firms}
Principles of Fluorescence Spectroscopy
Pairwise alignment of protein interaction networks.
Reconceptualizing the Digital Divide
A gene-expression signature to predict survival in breast cancer across independent data sets.
Environmental, economic, and energetic costs and benefits of biodiesel and ethanol biofuels
Ethanol Can Contribute to Energy and Environmental Goals
The Ganglia Distributed Monitoring System: Design, Implementation, and Experience
Statistical entity-topic models
Conservation of Expression and Sequence of Metabolic Genes Is Reflected by Activity Across Metabolic States.
On Numbers and Games
NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes.
Harvesting social knowledge from folksonomies
High-resolution imaging reveals highly selective nonface clusters in the fusiform face area
Biopipe: A Flexible Framework for Protocol-Based Bioinformatics Analysis
Two-Point Microrheology of Inhomogeneous Soft Materials
Ant Colony Optimization and Swarm Intelligence, 5th International Workshop, ANTS~2006
A Racing Algorithm for Configuring Metaheuristics
The haptic display of complex graphical environments
Web Service Semantics - WSDL-S
Predicting transcription factor binding sites using local over-representation and comparative genomics
Methods for evaluating clustering algorithms for gene expression data using a reference set of functional classes
SweetWiki: semantic web enabled technologies in Wiki
WikiTrails: augmenting Wiki structure for collaborative, interdisciplinary learning
Is there a space for the teacher in a WIKI?
Symbolic Model Checking without BDDs
The HL7 Clinical Document Architecture.
The structure of self-organized blogosphere
Extracting Social Networks and Contact Information From Email
An Introduction to Noncommutative Spaces and their Geometry
Watching a Protein as it Functions with 150-ps Time-Resolved X-ray Crystallography
Spatially Bounded Online Social Networks and Social Capital: The Role of Facebook
Population Graphs: the graph theoretic shape of genetic structure.
Designing for Interaction: Creating Smart Applications and Clever Devices (Voices That Matter)
Pvclust: an R package for assessing the uncertainty in hierarchical clustering.
Predicting the prognosis of breast cancer by integrating clinical and microarray data with Bayesian networks
Combining Pattern Classifiers: Methods and Algorithms
One-class svms for document classification
The neuronal basis and ontogeny of empathy and mind reading: review of literature and implications for future research.
JASPAR: an open-access database for eukaryotic transcription factor binding profiles.
Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints
Internet Paradox Revisited
Modularity from fluctuations in random graphs and complex networks
The calculi of emergence: computation, dynamics and induction
Text similarity: an alternative way to search MEDLINE.
The Geometry of Musical Chords
Organizing principles of real-time memory encoding: neural clique assemblies and universal neural codes
Bayesian models of object perception
BOINC: A System for Public-Resource Computing and Storage
How lipids and proteins interact in a membrane: a molecular approach.
The Neural Basis of Perceptual Learning
A fisheye follow-up: further reflections on focus + context
Brain-machine interfaces: past, present and future.
Visual field representations and locations of visual areas V1/2/3 in human visual cortex.
Vision as Bayesian inference: analysis by synthesis?
Instance-based learning algorithms
The Random Subspace Method for Constructing Decision Forests
Personalization in distributed e-learning environments
A performance evaluation of local descriptors
A cooperative switch determines the sign of synaptic plasticity in distal dendrites of neocortical pyramidal neurons.
Reduced models of proteins and their applications
Residue-Residue Potentials with a Favorable Contact Pair Term and an Unfavorable High Packing Density Term for Simulation and Threading
The replicator equation on graphs
ButterflyNet: a mobile capture and access system for field biology research
Mobile phones and paper documents: evaluating a new approach for capturing microfinance data in rural India
An initial map of insertion and deletion (INDEL) variation in the human genome.
An auxin-driven polarized transport model for phyllotaxis.
A sequential algorithm for training text classifiers
Generic User Modeling Systems
Evaluation of Item-Based Top-N Recommendation Algorithms
Item-based top-{\it } recommendation algorithms
The digital divide: the special case of gender
Integrating Genetic and Network Analysis to Characterize Genes Related to Mouse Weight
Hierarchical chamfer matching: a parametric edge matching algorithm
{Ontological uncertainty and innovation}
Global topological features of cancer proteins in the human interactome
A census of human cancer genes
Automated protein function prediction--the genomic challenge
The RNA Ontology Consortium: an open invitation to the RNA community.
Distributed representations, simple recurrent networks, and grammatical structure
Building Knowledge through Families of Experiments
Describing software architecture with UML
{T}he {B}lue {O}belisk--{I}nteroperability in {C}hemical {I}nformatics
Sampling Strategies for Bag-of-Features Image Classification
Conditional Random Fields for Object Recognition
A Sound Type System for Secure Flow Analysis
Scaling and power-laws in ecological systems.
Public Library 2.0: Towards a new mission for public libraries as a ?network of community knowledge?
A codon-based model of nucleotide substitution for protein-coding DNA sequences.
The consensus coding sequences of human breast and colorectal cancers.
A Rapid, Reversible, and Tunable Method to Regulate Protein Function in Living Cells Using Synthetic Small Molecules
Coexpression Analysis of Human Genes Across Many Microarray Data Sets
Wiley InterScience :: Journal :: Article PDF
Membership Size, Communication Activity, and Sustainability: A Resource-Based Model of Online Social Structures
Semantic Taxonomy Induction from Heterogenous Evidence
Consistent resting-state networks across healthy subjects.
Rat toxicogenomic study reveals analytical consistency across microarray platforms
Performance comparison of one-color and two-color platforms within the MicroArray Quality Control (MAQC) project.
Using RNA sample titrations to assess microarray platform performance and normalization techniques
Evaluation of DNA microarray results with quantitative gene expression platforms.
Synaptic plasticity: taming the beast
"Dynamics of neuronal firing correlation: {M}odulation of ""effective connectivity"""
Orientation tuning of input conductance, excitation, and inhibition in cat primary visual cortex
Uncertainty Relation for Resolution in Space, Spatial Frequency, and Orientation Optimized by Two-Dimensional Visual Cortical Filters
Recurrent Excitation in Neocortical Circuits
Bayesian Surprise Attracts Human Attention
Unsupervised Texture Segmentation Using {G}abor Filters
Evolution of the Brain and Intelligence
The Two-Dimensional Spatial Structure of Simple Receptive Fields in Cat Striate Cortex
Mechanisms of visual attention in the human cortex
Self-organization of orientation sensitive cells in the striate cortex
Computational Neuroscience
Chaos in neuronal networks with balanced excitatory and inhibitory activity
Excitatory and inhibitory interactions in localized populations of model neurons
From Disorder to Order in Marching Locusts
Discovering high-affinity ligands for proteins: SAR by NMR.
Toll-like receptors and innate immunity.
Regulatory on/off minimization of metabolic flux changes after genetic perturbations
Mechanisms of mindfulness
Imaging Intracellular Fluorescent Proteins at Nanometer Resolution
Managing Knowledge in Global Software Development Efforts: Issues and Practices
Fitness Distance Correlation as a Measure of Problem Difficulty for Genetic Algorithms
Evolution of protein structural classes and protein sequence families.
Access control mechanisms for inter-organizational workflow
Pranking with ranking
Co-evolutionary Analysis of Domains in Interacting Proteins Reveals Insights into Domainâ€“Domain Interactions Mediating Proteinâ€“Protein Interactions
Designing Interactions
Copy and Paste Literacy: Literacy Practices in the Production of a MySpace Profile - An Overview
Brain dynamics during natural viewing conditions--a new guide for mapping connectivity in vivo.
Scientific Software Development Is Not an Oxymoron
Stochastic mRNA Synthesis in Mammalian Cells
{Q}uality of {S}ervice for {W}orkflows and {W}eb {S}ervice {P}rocesses
Similarity of Semantic Relations
Learning Dictionaries for Information Extraction by Multi-Level Bootstrapping
Predicting the Effects of Amino Acid Substitutions on Protein Function
Prediction of deleterious human alleles
Developing context-aware pervasive computing applications: Models and approach
Recovering high dynamic range radiance maps from photographs
How are we searching the World Wide Web? A comparison of nine search engine transaction logs
{Planning algorithms}
Jamming phase diagram for attractive particles
The Distributed Constraint Satisfaction Problem: Formalization and Algorithms
Stoichiometry and turnover in single, functioning membrane protein complexes
Head-Driven Phrase Structure Grammar
Deformable templates using large deformation kinematics
Cooling a nanomechanical resonator with quantum back-action
Protein-RNA interactions: exploring binding patterns with a three-dimensional superposition analysis of high resolution structures.
The Wealth of Nations (Bantam Classics)
Symmetry and Self-Organization in Complex Systems
Principles of microRNA regulation of a human cellular signaling network
Semantics and Complexity of SPARQL
Representations in Distributed Cognitive Tasks
Categorization and Reasoning among Tree Experts: Do All Roads Lead to Rome?
Cognitive representations of semantic categories
{Context-Aware Technology: A Phenomenological Perspective}
Location-Based Services for Mobile Telephony: a Study of Users' Privacy Concerns
Could quantum mechanics be an approximation to another theory?
Possible generalization of Boltzmann-Gibbs statistics
The $25,000,000,000 Eigenvector: The Linear Algebra behind Google
Critical period effects in second language learning: The influence of maturational state on the acquisition of English as a second language
Priming and Human Memory Systems
The Regulatory Genome: Gene Regulatory Networks In Development And Evolution
Cavity cooling of a single atom
Enhancement schemes for constraint processing: Backjumping, learning, and cutset decomposition
The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans
Beyond mind-reading: multi-voxel pattern analysis of fMRI data.
REGIME SHIFTS, RESILIENCE, AND BIODIVERSITY IN ECOSYSTEM MANAGEMENT -
{Towards a general theory of adaptive walks on rugged landscapes.}
{Ecosystems and the Biosphere as Complex Adaptive Systems}
Symbiosis insights through metagenomic analysis of a microbial consortium
The genomic rate of adaptive evolution
Imitating Manual Curation of Text-Mined Facts in Biomedicine
CpG island methylation in human lymphocytes is highly correlated with DNA sequence, repeats, and predicted DNA structure.
Automatic ontology-based knowledge extraction from Web documents
National Center for Biomedical Ontology: Advancing Biomedicine through Structured Organization of Scientific Knowledge
Diffusion-Limited Aggregation, a Kinetic Critical Phenomenon
"External validity of randomised controlled trials: ""to whom do the results of this trial apply?""."
Visual Learning and Recognition of 3-D Objects from Appearance
Models of object recognition
Emergence is coupled to scope, not level
A General Model for the Origin of Allometric Scaling Laws in Biology
Modern computational approaches for analysing molecular genetic variation data
A tutorial on statistical methods for population association studies
Computer programs for population genetics data analysis: a survival guide.
Multilinear Analysis of Image Ensembles: TensorFaces
Quantification of the variation in percentage identity for protein sequence alignments
Scientific Workflow Management and the Kepler System
Genome-wide High-Resolution Mapping and Functional Analysis of DNA Methylation in Arabidopsis
A Formal Treatment of Generalized Preferential Attachment and its Empirical Validation
Symbol grounding and meaning: {A} comparison of high-dimensional and embodied theories of meaning.
Studies in the way of words
{{A} solution to {P}lato's problem: {T}he latent semantic analysis theory of acquisition, induction and representation of knowledge}
Advances in {N}eural {I}nformation {P}rocessing {S}ystems
{{C}oncept {B}ased {Q}uery {E}xpansion}
The large-scale structure of semantic networks: statistical analyses and a model of semantic growth
Citation Statistics from 110 Years of Physical Review
Fast Approximation of Centrality
A Short History of Nearly Everything
Origin of Wealth: Evolution, Complexity, and the Radical Remaking of Economics
Local sleep and learning
Multivariable geostatistics in S: the gstat package*1
High Gamma Power Is Phase-Locked to Theta Oscillations in Human Neocortex
Studies of interference in serial verbal reactions.
BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data
Differences in vertebrate microRNA expression.
Data withholding in academic genetics: evidence from a national survey
Library 2.0 Theory: Web 2.0 and Its Implications for Libraries
A Pattern-Based Method for the Identification of MicroRNA Binding Sites and Their Corresponding Heteroduplexes
Gradual Typing for Functional Languages
A Survey of Schema-Based Matching Approaches.
Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM)
Identifying regulatory mechanisms using individual variation reveals key role for chromatin modification
A Synaptically Controlled, Associative Signal for Hebbian Plasticity in Hippocampal Neurons
Enzyme promiscuity: evolutionary and mechanistic aspects
"Approximate is better than ""exact"" for interval estimation of binomial proportions"
Mercury: supporting scalable multi-attribute range queries
How do we track invisible objects?
A service-oriented middleware for building context-aware services
Nonparametric Belief Propagation
Agent-based computational economics: Growing economies from the bottom up
Distributed computing in practice: the Condor experience
Finding the flow in web site search
SybilGuard: Defending Against Sybil Attacks via Social Networks
Comparisons of dN/dS are time dependent for closely related bacterial genomes
Bounded Rationality: The Adaptive Toolbox
Lectures on the Curry-Howard isomorphism
Misdirections in Conservation Biology
Doing Virtually Nothing: Awareness and Accountability in Massively Multiplayer Online Worlds
Reappraising cognitive styles in adaptive web applications
Discrete Component Analysis
Layers of Silence, Arenas of Voice: The Ecology of Visible and Invisible Work
Farming and the fate of wild nature.
The role of knowledge in discourse comprehension: a construction-integration model.
Social dilemmas
FROM THE PERCEPTION OF ACTION TO THE UNDERSTANDING OF INTENTION
Mixed atomistic and coarse-grained molecular dynamics: simulation of a membrane-bound ion channel.
Stratus not altocumulus: a new view of the yeast protein interaction network.
Hierarchical ordering of sequential processes
On notation
Statistical significance in biological sequence analysis
Pattern Recognition and Machine Learning (Information Science and Statistics)
Social norms and human cooperation
Formal models for expert finding in enterprise corpora
Global temperature change
Quantitative and predictive model of transcriptional control of the Drosophila melanogaster even skipped gene.
{The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)}
{Hearing Sounds, Understanding Actions: Action Representation in Mirror Neurons}
Language within our grasp
Retrieval evaluation with incomplete information
Applying a Model Transformation Taxonomy to Graph Transformation Technology
Extra Precision Glide: Docking and Scoring Incorporating a Model of Hydrophobic Enclosure for Protein-Ligand Complexes
The Semantic Grid: Past, Present and Future.
A music similarity function based on signal analysis
Dos and Don'ts of Client Authentication on the Web
Decision-Theoretic Planning: Structural Assumptions and Computational Leverage
Graph Transformation in a Nutshell
Exercise of Human Agency Through Collective Efficacy
Genetic and developmental basis of evolutionary pelvic reduction in threespine sticklebacks
Evolution of alternative transcriptional circuits with identical logic.
Using graph concepts to understand the organization of complex systems
Co-evolution of transcriptional and post-translational cell-cycle regulation
Biological function of unannotated transcription during the early development of Drosophila melanogaster
Tabu Search
Principles of protein folding--a perspective from simple exact models.
Integrated neural processes for defining potential actions and deciding between them: a computational model.
MEME: discovering and analyzing DNA and protein sequence motifs.
A probabilistic method to detect regulatory modules.
Bioprospector: Discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes.
Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes.
Possible Ancestral Structure in Human Populations
The Many Faces of Protein&#8211;Protein Interactions: A Compendium of Interface Geometry
Identifying the pitfalls for social interaction in computer-supported collaborative learning environments: a review of the research
Codon-Substitution Models for Heterogeneous Selection Pressure at Amino Acid Sites
Accuracy and Power of Statistical Methods for Detecting Adaptive Evolution in Protein Coding Sequences and for Identifying Positively Selected Sites
A critical assessment of docking programs and scoring functions.
MAC protocols for wireless sensor networks: a survey
Reinforcement Learning
Large datasets at a glance: combining textures and colors in scientific visualization
Fitting a mixture model by expectation maximization to discover motifs in biopolymers.
Finding Genes That Underlie Complex Traits.
An algorithm for finding signals of unknown length in DNA sequences
Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes
Finding motifs using random projections.
Diffusion maps, spectral clustering and reaction coordinates of dynamical systems
Finding functional sequence elements by multiple local alignment
Population Dynamics of Spiking Neurons: Fast Transients, Asynchronous States, and Locking
The information seeking behaviour of the users of digital scholarly journals
Lexical representation and development in a second language
The C-terminal half of Phytophthora infestans RXLR effector AVR3a is sufficient to trigger R3a-mediated hypersensitivity and suppress INF1-induced cell death in Nicotiana benthamiana
Kepler: An Extensible System for Design and Execution of Scientific Workflows.
The Connectivity Map: Using Gene-Expression Signatures to Connect Small Molecules, Genes, and Disease
Modeling Rational Agents within a BDI-Architecture.
Methods for comparing rankings of search engine results
Comparing top k lists
PubFocus: semantic MEDLINE/PubMed citations analytics through integration of controlled biomedical dictionaries and ranking algorithm
Towards a Dynamic Theory of Strategy
Impulses and Physiological States in Theoretical Models of Nerve Membrane
"When Is ""Nearest Neighbor"" Meaningful?"
Mutual information relevance networks: functional genomic clustering using pairwise entropy measurements.
Modelling gene expression data using dynamic {B}ayesian networks
Discovering Similar Multidimensional Trajectories
IR evaluation methods for retrieving highly relevant documents
{Using Control Theory to Achieve Service Level Objectives In Performance Management}
From Data Mining to Knowledge Discovery in Databases
ANN-Spec: a method for discovering transcription factor binding sites with improved specificity.
Social software: E-learning beyond learning management systems
It's a noisy business! Genetic regulation at the nanomolar scale
Contextual guidance of eye movements and attention in real-world scenes: the role of global features in object search.
Distributed hierarchical processing in the primate cerebral cortex.
From basic network principles to neural architecture: emergence of orientation-selective cells.
Real-time computing without stable states: a new framework for neural computation based on perturbations.
A social hypertext model for finding community in blogs
Speech and Language Processing
From in vivo to in silico biology and back
Genetics: Junk DNA as an evolutionary force
{Electric Field Effect in Atomically Thin Carbon Films}
3D Complex: a Structural Classification of Protein Complexes
An Introduction to Factor Graphs
A Statechart Framework for Agent Roles that Captures Expertise and Learns Improved Behavior
Application of Genome-Wide Single Nucleotide Polymorphism Typing: Simple Association and Beyond
Beyond Bags of Features: Spatial Pyramid Matching for Recognizing Natural Scene Categories
Online choice of active learning algorithms
Local Type Inference
Diminishing Reciprocal Fairness by Disrupting the Right Prefrontal Cortex.
A Gibbs sampling method to detect overrepresented motifs in the upstream regions of coexpressed genes.
Fundamental forms of information
Large Punctuational Contribution of Speciation to Evolutionary Divergence at the Molecular Level
Out of the Tropics: Evolutionary Dynamics of the Latitudinal Diversity Gradient
From Plant Traits to Plant Communities: A Statistical Mechanistic Approach to Biodiversity
A Group Mobility Model for Ad Hoc Wireless Networks
Can you see me now?
An Introduction to the Resource Description Framework
An Experimental study of benchmarking functions for Genetic Algorithms
Integrating Probabilistic Extraction Models and Data Mining to Discover Relations and Patterns in Text
Mechanical reasoning by mental simulation.
SCPD: a promoter database of the yeast Saccharomyces cerevisiae.
Causal Inference Without Counterfactuals
Survey over image thresholding techniques and quantitative performance evaluation
Pathways: Augmenting interoperability across scholarly repositories
Quantum phase transition from a superfluid to a Mott insulator in a gas of ultracold atoms
Biologically Based Computational Models of High-Level Cognition
The golden age of software architecture
Locating causes of program failures
Correlated mutations contain information about protein-protein interaction
Scaling personalized web search
Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities.
Bio3d: an R package for the comparative analysis of protein structures.
Putting Objects in Perspective
Packet combining in sensor networks
Automated user modeling for personalized digital libraries
Real-Time Computation at the Edge of Chaos in Recurrent Neural Networks
The computational neurobiology of learning and reward
Gene regulatory networks in the evolution and development of the heart.
High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays
Neural Synchrony in Brain Disorders: Relevance for Cognitive Dysfunctions and Pathophysiology
Learning Networks and Connective Knowledge
The Smart Phone: A Ubiquitous Input Device
Visual pattern recognition by moment invariants
PGC-1 coactivators: inducible regulators of energy metabolism in health and disease.
Observation of strong coupling between one atom and a monolithic microresonator
An introduction to multisensor data fusion
Archetypes of Knowledge Communities
Wiley InterScience :: Article :: HTML Full Text
Large-scale sequencing and the new animal phylogeny
Accurate FRET Measurements within Single Diffusing Biomolecules Using Alternating-Laser Excitation
The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements.
A review of vessel extraction techniques and algorithms
Exact Maximum A Posteriori Estimation for Binary Images
"Dispelling ""design"" as the black art of CHI"
{Resilience: The emergence of a perspective for socialâ€“ecological systems analyses}
{Adaptation, adaptive capacity and vulnerability}
RNA world - the dark matter of evolutionary genomics
Handbook of Science and Technology Studies
On accurate measurement of link quality in multi-hop wireless mesh networks
802.11b/g link level measurements for an outdoor wireless campus network
Getting the right design and the design right
Understanding the Complexity of Economic, Ecological, and Social Systems
Argumentation-based negotiation
Ten Simple Rules for Reviewers
Protein Superfamily Evolution and the Last Universal Common Ancestor (LUCA)
Panarchy: Understanding Transformations in Human and Natural Systems
Computer-Mediated Communication: Impersonal, Interpersonal, and Hyperpersonal Interaction
Towards Situated Computing
On the logical relationship between natural selection and self-organization.
Bandwidth estimation: metrics, measurement techniques, and tools
Mining literature for systems biology
Extracting places from traces of locations
Cluster-based analysis of FMRI data.
Improving text classification by shrinkage in a hierarchy of classes
Mining communities and their relationships in blogs: A study of online hate groups
The Grounding and Sharing of Symbols
Prometheus: A Methodology for Developing Intelligent Agents
Spins in few-electron quantum dots
Comparison of protein interaction networks reveals species conservation and divergence
{MaxProp: Routing for Vehicle-Based Disruption-Tolerant Networks}
Pathway and gene-set activation measurement from mRNA expression data: the tissue distribution of human pathways.
Merlin--rapid analysis of dense genetic maps using sparse gene flow trees
Association of NOD2 leucine-rich repeat variants with susceptibility to Crohn's disease
Causality in Social Network Analysis
Combined Object Categorization and Segmentation With An Implicit Shape Model
Distributed Systems: Principles and Paradigms
Extracting a mobility model from real user traces
Learning to predict protein-protein interactions from protein sequences.
Computational analysis of tissue-specific combinatorial gene regulation: predicting interaction between transcription factors in human tissues.
Independent Codes for Spatial and Episodic Memory in Hippocampal Neuronal Ensembles
Identifying cis-regulatory modules by combining comparative and compositional analysis of DNA.
A linguistic model for the rational design of antimicrobial peptides
Genetics of global gene expression
A gene-centric approach to genome-wide association studies
Correlations in the Motion of Atoms in Liquid Argon
{Emotion, Cognition, and Behavior}
Re-evaluating the Role of BLEU in Machine Translation Research
Network Data and Measurement
{Mismatch string kernels for discriminative protein classification}
Markov chains
MAGMA: A Multiagent Architecture for Metaheuristics
High Availability for Ultra-Scale High-End Scientific Computing
Distributed Peer-to-Peer Control for {Harness}
{Satin: Efficient Parallel Divide-and-Conquer in Java}
Adaptive Task Allocation Inspired by a Model of Division of Labor in Social Insects
A State-of-the-Art Survey on Software Merging
The {S}warm simulation system: a toolkit for building multi-agent simulations
PyEvolve: a toolkit for statistical modelling of molecular evolution
Endurance running and the evolution of Homo
Genetics and the making of Homo sapiens
A tutorial on onset detection in music signals
Nonequilibrium phase transition in the coevolution of networks and opinions
Text mining and its potential applications in systems biology
Bio-ontologies: current trends and future directions
Open source tools and toolkits for bioinformatics: significance, and where are we?
The dynamics of Machiavellian intelligence
A Formal Ontology of Properties
The {P}enn treebank: Annotating predicate argument structure
Block-iterative frequency-domain methods for Maxwell's equations in a planewave basis
Distance Metric Learning for Large Margin Nearest Neighbor Classification.
Localization of protein-binding sites within families of proteins.
Learning a kernel matrix for nonlinear dimensionality reduction
Caregivers of Stroke Patient Family Members: Behavioral and Attitudinal Indicators of Overprotective Care
Social cognition
Imagined Communities: Awareness, Information Sharing, and Privacy on the Facebook
Hierarchical Reinforcement Learning with the MAXQ Value Function Decomposition
A supervised hidden Markov model framework for efficiently segmenting tiling array data in transcriptional and ChIP-chip experiments: systematically incorporating validated biological knowledge.
Common Kibra Alleles Are Associated with Human Memory Performance
A density-based algorithm for discovering clusters in large spatial databases with noise
On grasp choice, grasp models, and the design of hands for manufacturing tasks
Interaction Design: Beyond Human-Computer Interaction
Ceph: A Scalable, High-Performance Distributed File System
A guide through present computational approaches for the identification of mammalian microRNA targets
Data-driven modelling of signal-transduction networks.
Protein tyrosine phosphatases: from genes, to function, to disease
Linking data to models: data regression
Locating mammalian transcription factor binding sites: A survey of computational and experimental techniques
On the complexity of solving Markov decision problems
Best practice in primary care pathology: review 4
Fluorescence microscopy with diffraction resolution barrier broken by stimulated emission
Toward fluorescence nanoscopy
MicroRNA signatures in human cancers
The accuracy of several multiple sequence alignment programs for proteins
A theory of cortical responses.
Structural Inference of Hierarchies in Networks
Relevance based language models
Verbosity: a game for collecting common-sense facts
Investigating information systems with ethnographic research
Why do People Write for Wikipedia? Incentives to Contribute to Open-Content Publishing
Long-term motor cortex plasticity induced by an electronic neural implant
Insights into social insects from the genome of the honeybee Apis mellifera
Dynamic predictions: oscillations and synchrony in top-down processing.
Procrastination, deadlines, and performance: self-control by precommitment.
Suppression of reactive oxygen species and neurodegeneration by the PGC-1 transcriptional coactivators.
XORs in The Air: Practical Wireless Network Coding
Computational analysis of the role of the hippocampus in memory
Super-resolution image reconstruction: a technical overview
Bayesian inference with probabilistic population codes.
454 sequencing put to the test using the complex genome of barley.
A Bayesian Approach to Unsupervised One-Shot Learning of Object Categories
The God Delusion
Self-organization of collaboration networks
Benchmarking Sets for Molecular Docking
Moving on from WeiserÃ¢Â€Â™s Vision of Calm Computing: Engaging UbiComp Experiences
Toolglass and magic lenses: the see-through interface
Solving Ill-Conditioned and Singular Linear Systems: A Tutorial on Regularization
Efficient $q$-Gram Filters for Finding All $\\epsilon$-Matches Over A Given Length
An Architectural Style for Ajax
Forces Shaping the Fastest Evolving Regions in the Human Genome
Large-Scale Turnover of Functional Transcription Factor Binding Sites in Drosophila
Bandit based Monte-Carlo Planning
Awareness and teamwork in computer-supported collaborations
Oscillatory gamma activity in humans and its role in object representation.
Development of object concepts in infancy: Evidence for early learning in an eye-tracking paradigm.
Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation captureâ€“on-chip (4C)
Genome-wide analysis of estrogen receptor binding sites.
A worldwide survey of haplotype variation and linkage disequilibrium in the human genome.
A Framework for Learning Predictive Structures from Multiple Tasks and Unlabeled Data
Radical embodiment: neural dynamics and consciousness.
Identification Problems in the Social Sciences
The emergence of linguistic structure: An overview of the iterated learning model
Concepts and experiments in computational reflection
Natural language from artificial life
Semi-Supervised Learning of Geographical Gazetteers From the Internet
Multi-agent simulations and ecosystem management: a review
Training conditional random fields via gradient tree boosting
An affine invariant interest point detector
Peekaboom: a game for locating objects in images
Statistical fraud detection: A review
High-resolution intersubject averaging and a coordinate system for the cortical surface
Mapping Information Flow in Sensorimotor Networks
ArrayFusion: a web application for multi-dimensional analysis of CGH, SNP and microarray data.
Does the brain have a baseline? Why we should be resisting a rest
Methods and Techniques of Adaptive Hypermedia
The Economics of Climate Change. The Stern Review
Scale and performance in a distributed file system
Determining Expert Profiles (With an Application to Expert Finding)
Improving the effectiveness of information retrieval with local context analysis
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
Genomic signatures to guide the use of chemotherapeutics.
The Turn: Integration of Information Seeking and Retrieval in Context (The Information Retrieval Series)
BNArray: an R package for constructing gene regulatory networks from microarray data by using Bayesian network.
An integrative approach for causal gene identification and gene regulatory pathway inference.
Conservation planning for ecosystem services.
Personal learning environments: Challenging the dominant design of educational systems
Natural selection on human microRNA binding sites inferred from SNP data
Event extraction from biomedical papers using a full parser.
CellProfiler: image analysis software for identifying and quantifying cell phenotypes
Diversity of microRNAs in human and chimpanzee brain
The probability of duplicate gene preservation by subfunctionalization.
Babel's tower revisited: a universal resource for cross-referencing across annotation databases.
iFold: a platform for interactive folding simulations of proteins.
Learning Domain Ontologies for Web Service Descriptions: an Experiment in Bioinformatics
Medical image registration.
Genes, brain, and cognition: A roadmap for the cognitive scientist
Representation is representation of similarities
UniProt: the Universal Protein knowledgebase
Resveratrol improves health and survival of mice on a high-calorie diet
Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis.
Radiation-pressure cooling and optomechanical instability of a micromirror
Self-cooling of a micromirror by radiation pressure
Modelling data across labs, genomes, space and time
Evolution of complexity in signaling pathways
{Adaptive capacity and human cognition: The process of individual adaptation to climate change}
Gene prediction with a hidden Markov model and a new intron submodel
GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions
Heuristic approach to deriving models for gene finding
TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders
Comparative ab initio prediction of gene structures using pair HMMs
Integrating genomic homology into gene structure prediction
GAZE: a generic framework for the integration of gene-prediction data by dynamic programming
{{B}iological identifications through {D}{N}{A} barcodes}
A Task-Oriented Non-Interactive Evaluation Methodology for Information Retrieval Systems
Action recognition in the premotor cortex
Quantum theory, the {Church-Turing} principle and the universal quantum computer
Experimental realization of {S}hor's quantum factoring algorithm using nuclear magnetic resonance
Segregation of form, color, movement, and depth: anatomy, physiology, and perception.
DNA methylation profiling of human chromosomes 6, 20 and 22
The Potts model
Impacts of biodiversity loss on ocean ecosystem services.
Architectural considerations for a new generation of protocols
A two-hit trigger for siRNA biogenesis in plants.
Strong localization of photons in certain disordered dielectric superlattices
The principles of collective animal behaviour.
Global, In Vivo, and Site-Specific Phosphorylation Dynamics in Signaling Networks.
Structure of growing social networks
Synthetic biology--putting engineering into biology.
In vivo enhancer analysis of human conserved non-coding sequences
Boosting slow oscillations during sleep potentiates memory.
Locally weighted learning for control
Scaling to Very Very Large Corpora for Natural Language Disambiguation
A centering approach to pronouns
A simple rule-based part-of-speech tagger
A statistical approach to language translation
Statistical parsing with a context-free grammar and word statistics
{Introduction to the Special Issue on Computational Linguistics Using Large Corpora}
Context-sensitive learning methods for text categorization
Fast effective rule induction
Similarity-Based Models of Word Cooccurrence Probabilities
Supervised and unsupervised discretization of continuous features
{Learning and development in neural networks: the importance of starting small}
An empirical study of learning speed in back-propagation networks
Machine Learning for Information Extraction in Informal Domains
{A Winnow-Based Approach to Context-Sensitive Spelling Correction}
Customizing a Lexicon to Better Suit a Computational Task
Deep Read: A Reading Comprehension System
Resolving pronoun references
Estimating attributes: Analysis and extensions of RELIEF
Optimal brain damage
Heterogeneous uncertainty sampling for supervised learning
Learning Quickly when irrelevant attributes abound: A new linear-threshold algorithm
Automatic acquisition of a large subcategorization dictionary from corpora
The {O}xford {H}andbook of {C}omputational {L}inguistics
A Learning Approach to Shallow Parsing
Updating {quasi-Newton} matrices with limited storage
Attention, similarity, and the identification-categorization relationship
Shallow Parsing using Noisy and Non-Stationary Training Material
The language instinct
Understanding normal and impaired word reading: computational principles in quasi-regular domains
Recursive Distributed Representations
{The Neural Basis of Cognitive Development: A Constructivist Manifesto}
Family resemblances: studies in the internal structure of categories
{Boosting and Rocchio applied to text filtering}
Probabilistic Part-of-Speech Tagging Using Decision Trees
{Toward a universal law of generalization for psychological science}
Parsing English with a Link Grammar
Information extraction supported question answering
{SRILM} -- {A}n extensible language modeling toolkit
An Efficient Probabilistic Context-Free Parsing Algorithm that Computes Prefix Probabilities
Active learning for natural language parsing and information extraction
Verb semantics and lexical selection
Toward Machine Emotional Intelligence: Analysis of Affective Physiological State
Analyzing and Improving a BitTorrent Network's Performance Mechanisms
Beyond Personal Webpublishing: An Exploratory Study of Conversational Blogging Practices
Object Class Recognition by Unsupervised Scale-Invariant Learning
A metric for distributions with applications to image databases
Learning a sparse representation for object detection
A bayesian hierarchical model for learning natural scene categories
Feature detection with automatic scale selection
A comparison of affine region detectors
Indexing based on scale invariant interest points
Shape matching and object recognition using shape contexts
Local Grayvalue Invariants for Image Retrieval
Adjusting batch effects in microarray expression data using empirical Bayes methods.
Sleep inspires insight.
OntoWiki: Community-driven Ontology Engineering and Ontology Usage based on Wikis
Evaluation of clustering algorithms for protein-protein interaction networks
Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation
Combining independent component analysis and correlation analysis to probe interregional connectivity in fMRI task activation datasets.
Analysis of sample set enrichment scores: assaying the enrichment of sets of genes for individual samples in genome-wide expression profiles
Cooperation prevails when individuals adjust their social ties
Small dsRNAs induce transcriptional activation in human cells.
Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities
The unbearable automaticity of being
Pleiotropy, natural selection, and the evolution of senescence
Psychometric theory
Measuring Trust
The neural basis of economic decision-making in the ultimatum game
Information science
Awareness and the WWW: an overview
A backbone-based theory of protein folding
How biologically relevant are interaction-based modules in protein networks?
Modeling Somatic Evolution in Tumorigenesis
Bigtable: A Distributed Storage System for Structured Data
Swarm Intelligence
Preparation of Topical Reading Lists from the Link Structure of Wikipedia
A protein interaction network for pluripotency of embryonic stem cells
SURF: Speeded Up Robust Features
Systems biology as a foundation for genome-scale synthetic biology.
GenDB--an open source genome annotation system for prokaryote genomes
Surface plasmon resonance sensors: review
Self&#45;&#45;organized network evolution coupled to extremal dynamics
Statistical potential for assessment and prediction of protein structures
The Ontology of the Gene Ontology
Bluetooth and WAP push based location-aware mobile advertising system
From databases to dataspaces: a new abstraction for information management
Generalized Search Trees for Database Systems
Determining semantic similarity among entity classes from different ontologies
A Calculus of Mobile Processes, Parts I and {II}
Performance evaluation of safety applications over DSRC vehicular ad hoc networks
Formation and structure of self-assembled monolayers
{B}eyond the {W}eb: {R}etrieval in {S}ocial {I}nformation {S}paces
{J}ust-{I}n-{T}ime {I}nformation {R}etrieval
{Q}uery {E}xpansion {U}sing {L}ocal and {G}lobal {D}ocument {A}nalysis
What is a word, what is a sentence? problems of tokenization
Ensemble docking of multiple protein structures: Considering protein structural variations in molecular docking
Rational group decision making: A random field Ising model at T = 0
Moving architectural description from under the technology lamppost
Advances in atomic force microscopy
A simple min-cut algorithm
Subwavelength confinement in an integrated metal slot waveguide on silicon
Alzheimer's disease.
Dynamic atomic force microscopy methods
Group recommender systems: a critiquing based approach
A general framework for weighted gene co-expression network analysis.
Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset
Boosting Image Retrieval
Empirical Analysis of Detection Cascades of Boosted Classifiers for Rapid Object Detection
Texture Features for Browsing and Retrieval of Image Data
cPath: open source software for collecting, storing, and querying biological pathways
Automatic linguistic indexing of pictures by a statistical modeling approach
LabelMe: a Database and Web-Based Tool for Image Annotation
"Learning Object Categories from Google""s Image Search"
Decoding Randomly Ordered DNA Arrays
Bioinformatics and Computational Biology Solutions Using R and Bioconductor (Statistics for Biology and Health)
On Distinguishing Epistemic from Pragmatic Action
The Functions of Music in Everyday Life: Redefining the Social in Music Psychology
Supporting Collaborative Process Knowledge Management in New Product Development Teams
Structure and tie strengths in mobile communication networks
RNA polymerase III transcribes human microRNAs
From Mirroring to Guiding: A Review of State of the Art Technology for Supporting Collaborative Learning
Similarity of Objects and the Meaning of Words
Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression.
fMR-adaptation: a tool for studying the functional properties of human cortical neurons
Principles for the Buffering of Genetic Variation
Simulating microscopic hydrodynamic phenomena with dissipative particle dynamics
Models for the Specific Adhesion of Cells to Cells
Combining multiple microarray studies and modeling interstudy variation
Meta-Analysis of Microarrays: Interstudy Validation of Gene Expression Profiles Reveals Pathway Dysregulation in Prostate Cancer
MetaGene: prokaryotic gene finding from environmental genome shotgun sequences
Introduction To Monte Carlo Algorithms
A free energy principle for the brain
On the Solution-Space Geometry of Random Constraint Satisfaction Problems
Combining Usage, Content, and Structure Data to Improve Web Site Recommendation
Predicting transcription factor affinities to DNA from a biophysical model
Proteome informatics I: Bioinformatics tools for processing experimental data
A Communication-Based Marketing Model for Managing Relationships
Analysis of one million base pairs of Neanderthal DNA
The plant immune system
RankProd: a bioconductor package for detecting differentially expressed genes in meta-analysis
Wikipedia: organisation from a bottom-up approach
Survey of Research towards Robust Peer-to-Peer Networks: Search Methods
Coding and transmission of information by neural ensembles.
{Motion-based recognition: a survey}
{On Active Contour Models and Balloons}
{A Dynamic Finite Element Surface Model for Segmentation and Tracking in Multidimensional Medical Images with Application to Cardiac 4D Image Analysis}
{Bilateral Filtering for Gray and Color Images}
A Statistical Model for General Contextual Object Recognition
Using Multiple Segmentations to Discover Objects and their Extent in Image Collections
TextonBoost: Joint Appearance, Shape and Context Modeling for Multi-Class Object Recognition and Segmentation
Contextual Priming for Object Detection
Unsupervised Learning of Models for Recognition
A multidimensional approach to the study of human-information interaction: A case study of collaborative information retrieval
CRUSH: Controlled, Scalable, Decentralized Placement of Replicated Data
Accelerated Evolution of Conserved Noncoding Sequences in Humans
Nonlinear structured-illumination microscopy: Wide-field fluorescence imaging with theoretically unlimited resolution
{Models of Innovative Knowledge Communities and Three Metaphors of Learning}
Operational Semantics for Multi-Language Programs
Ecological and Evolutionary Responses to Recent Climate Change
Direct and sensitive miRNA profiling from low-input total RNA.
Shape matching: similarity measures and algorithms
Rhythms of Social Interaction: Messaging within a Massive Online Network
Consumer health information seeking on the Internet: The state of the art.
Cortical Surface-Based Analysis {I}: Segmentation and Surface Reconstruction
Cortical Surface-Based Analysis {II}: Inflation, Flattening, and a Surface-Based Coordinate System
{BioNetGen}: software for rule-based modeling of signal transduction based on the interactions of molecular domains
An Exploratory Study of How Developers Seek, Relate, and Collect Relevant Information during Software Maintenance Tasks
Two or Four Bristles: Functional Evolution of an Enhancer of scute in Drosophilidae
On-line Boosting and Vision
Rate coding versus temporal order coding: what the retinal ganglion cells tell the visual cortex.
Models and Properties of Power-Law Adaptation in Neural Systems
A Power Primer
Factor analysis
Variability and memory of protein levels in human cells
Using task context to improve programmer productivity
{Navigating Social-Ecological Systems: Building Resilience for Complexity and Change}
Mining Association Rules in Folksonomies
A Survey of Outlier Detection Methodologies
A workflow management system based on intelligent collaborative objects
Fourier-, Hilbert- and wavelet-based signal analysis: are they really different approaches?
The evolution of strong reciprocity: cooperation in heterogeneous populations
Microtubules can bear enhanced compressive loads in living cells because of lateral reinforcement
The neuronal microRNA system
The short-latency dopamine signal: a role in discovering novel actions?
Finding instabilities in the community structure of complex networks.
Wikis und Blogs. Planen. Einrichten. Verwalten
Sequencing and Analysis of Neanderthal Genomic DNA
Reflective design
Proteorhodopsin phototrophy in the ocean.
Strategic Information Transmission
How different are structurally flexible and rigid binding sites? Sequence and structural features discriminating proteins that do and do not undergo conformational change upon ligand binding.
Conservation and evolution of gene coexpression networks in human and chimpanzee brains.
Fresnel: A Browser-Independent Presentation Vocabulary for RDF
Theory of Bose-Einstein condensation in trapped gases
An experimental study of the emergence of human communication systems
Damaged Merchandise? A Review of Experiments That Compare Usability Evaluation Methods
Extracting semantic predications from Medline citations for pharmacogenomics
Global variation in copy number in the human genome
Coherent Spontaneous Activity Identifies a Hippocampal-Parietal Memory Network
A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis
{Solar}: An Open Platform for Context-Aware Mobile Applications
TimeTree: a public knowledge-base of divergence times among organisms
Automated Software Test Data Generation
The Ball-Pivoting Algorithm for Surface Reconstruction
What memory is for
Non-coding RNAs: Lost in translation?
Approaches to Multisensor Data Fusion in Target Tracking: A Survey
An empirical assessment of adaptation techniques
"""One Size Fits All"": An Idea Whose Time Has Come and Gone"
The nature of systems biology
Ten Simple Rules for Selecting a Postdoctoral Position
The Connectivity Map: a new tool for biomedical research
Cancer as an evolutionary and ecological process
Co-occurrence matrices and their Applications in Information Science: Extending ACA to the Web Environment
Networks of strong ties
Making Globalization Work
Could humans recognize odor by phonon assisted tunneling?
Strangers and friends: collaborative play in world of warcraft
Center-piece subgraphs: problem definition and fast solutions
Out of Our Minds: Learning to be Creative
From The Cover: An algorithm for progressive multiple alignment of sequences with insertions
Face Recognition with Local Binary Patterns
Discovering evolutionary theme patterns from text: an exploration of temporal text mining
Why Do Computers Stop and What Can Be Done About It?
Why events are a bad idea (for high-concurrency servers)
Computational Inference of Neural Information Flow Networks
Neuroscience: exploring the brain
{Fundamentals of experimental design for cDNA microarrays}
Social cognitive neuroscience: A review of core processes
Symbolic Dynamics Generated by a Combination of Graphs
Ten years of individual-based modelling in ecology: what have we learned and what could we learn in the future?
Propagating waves mediate information transfer in the motor cortex
Qualitative Data Analysis: An Expanded Sourcebook(2nd Edition)
A Shrinkage Approach to Large-Scale Covariance Matrix Estimation and Implications for Functional Genomics
Learning Module Networks
An examination of procedures for determining the number of clusters in a data set
A tutorial on spectral clustering
The Elements of Typographic Style
Mate: A Tiny Virtual Machine for Sensor Networks
Trickle: A Self-Regulating Algorithm for Code Propagation and Maintenance in Wireless Sensor Networks
TOSSIM: Accurate and Scalable Simulation of Entire TinyOS Applications
A robust architecture for distributed inference in sensor networks.
Taming the underlying challenges of reliable multihop routing in sensor networks
Case studies for method and tool evaluation
Measures of semantic similarity and relatedness in the biomedical domain
A Comparison of String Distance Metrics for Name-Matching Tasks
Local Features for Object Class Recognition
Locality-Sensitive Hashing Scheme Based on p-Stable Distributions
Multiclass Object Recognition with Sparse, Localized Features
tagging, communities, vocabulary, evolution
Talk Before You Type: Coordination in Wikipedia
What goes around comes around: an analysis of del.icio.us as social space
A Framework for Web Science
Coarse-grained molecular dynamics simulations of membrane proteins and peptides
Automated Anatomical Labeling of Activations in SPM Using a Macroscopic Anatomical Parcellation of the MNI MRI Single-Subject Brain
The Chubby lock service for loosely-coupled distributed systems
Image Alignment and Stitching: A Tutorial
Selective Sampling Using the Query by Committee Algorithm
Evidence that microRNAs are associated with translating messenger RNAs in human cells.
Query clustering using user logs
Designing task visualizations to support the coordination of work in software development
Shared waypoints and social tagging to support collaboration in software development
{Asset Pricing}
An Intertemporal Capital Asset Pricing Model
{Why Does Stock Market Volatility Change over Time?}
{Analysis of Financial Time Series}
Graph-based methods for analysing networks in cell biology.
Introduction to Mathematical Statistics
Empirical studies of software engineering: a roadmap
A Lagrangian particle level set method
High-performance complex event processing over streams
Rates of species loss from Amazonian forest fragments
Interactive-engagement versus traditional methods: A six-thousand-student survey of mechanics test data for introductory physics courses
The initial knowledge state of college physics students
Attention and consciousness: two distinct brain processes
A Model of a Trust-based Recommendation System on a Social Network
A Systematic Review of Software Development Cost Estimation Studies
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis.
Toward Academic Library 2.0: Development and Application of a Library 2.0 Methodology
Gulf Stream density structure and transport during the past millennium
Highly nonrandom features of synaptic connectivity in local cortical circuits.
Semi-Supervised Learning
How scale-free are biological networks.
"Functional magnetic resonance imaging (fMRI) ""brain reading"": detecting and classifying distributed patterns of fMRI activity in human visual cortex."
Infotopia: How Many Minds Produce Knowledge
Turning on and off recurrent balanced cortical activity
Ultra-High Resolution Imaging by Fluorescence Photoactivation Localization Microscopy
Inferring binary trust relationships in Web-based social networks
Design by Contract with JML
Genome-wide detection of human copy number variations using high-density DNA oligonucleotide arrays.
Pathogen Recognition and Innate Immunity
How many drug targets are there?
{Theory of Rational Option Pricing}
An introduction to categorical data analysis
Systems biology, metabolic modelling and metabolomics in drug discovery and development.
An algorithm for pronominal anaphora resolution
Fine-Grained Network Time Synchronization using Reference Broadcasts
Why do people use information technology?: a critical review of the technology acceptance model
Implicit learning.
Functional analysis of eve stripe 2 enhancer evolution in Drosophila: rules governing conservation and change.
Python Scripting for Computational Science (Texts in Computational Science and Engineering)
Simulation of networks of spiking neurons: A review of tools and strategies
Efficient, multiple-range random walk algorithm to calculate the density of states.
Interneurons of the neocortical inhibitory system.
Accurate and reliable high-throughput detection of copy number variation in the human genome
Using the principle of entropy maximization to infer genetic interaction networks from gene expression patterns
Why the Internet only just works
A Statistical Approach to Anaphora Resolution
Summarizing Text Documents: Sentence Selection and Evaluation Metrics
The automatic creation of literature abstracts
A Maximum Entropy Approach to Identifying Sentence Boundaries
Knowledge sharing behavior in virtual communities: The relationship between trust, self-efficacy, and outcome expectationsâ˜†
A taxonomy and survey of grid resource management systems for distributed computing
Interpreting the BOLD signal.
Classifier Technology and the Illusion of Progress
An Ontology-Based Information Retrieval Model
Predictive Codes for Forthcoming Perception in the Frontal Cortex
From Private Attitude to Public Opinion: A Dynamic Theory of Social Impact.
Thinking Is Social: Experiments with the Adaptive Culture Model
Scalable Recognition with a Vocabulary Tree
Googling for a diagnosis--use of Google as a diagnostic aid: internet based study
{Resilience Thinking: Sustaining Ecosystems and People in a Changing World}
Measuring presence in virtual environments: a presence questionnaire
Reconciling Carbon-cycle Concepts, Terminology, and Methods
Whole-genome re-sequencing.
Functional variation and evolution of non-coding DNA
Structure and evolution of online social networks
A framework for developing mobile, context-aware applications
Generalized Latent Variable Modeling: Multilevel, Longitudinal, and Structural Equation Models
Web Data Mining: Exploring Hyperlinks, Contents, and Usage Data (Data-Centric Systems and Applications)
Web Services Agreement Specification (WS-Agreement)
Situation models in language comprehension and memory
Friends, friendsters, and top 8: Writing community into being on social network sites
Questions Programmers Ask During Software Evolution Tasks
State of the Art of Graph-based Data Mining
Tribler: A Social-Based Peer-to-Peer System
MicroRNAs preferentially target the genes with high transcriptional regulation complexity.
Genome-wide atlas of gene expression in the adult mouse brain
An information-theoretic framework for resolving community structure in complex networks
Graph Embedding and Extensions: A General Framework for Dimensionality Reduction
Difference and Union of Models
Teaching Social Software with Social Software
Linear Mixed Models for Longitudinal Data
Generalized multilevel structural equation modeling
A framework for analysis of dynamic social networks
Mining Metrics to Predict Component Failures
GPGPU: general purpose computation on graphics hardware
Assessment and collaboration in online learning
Video Google: A Text Retrieval Approach to Object Matching in Videos
COPASIÃ¢Â€Â”a COmplex PAthway SImulator
Evolution of gene expression in the Drosophila melanogaster subgroup
MAFFT version 5: improvement in accuracy of multiple sequence alignment
Rules for Modeling Signal-Transduction Systems
Detection versus estimation in event-related fMRI: choosing the optimal stimulus timing.
Five rules for the evolution of cooperation
A framework for consciousness
Color indexing
Consistent Data Replication: Is It Feasible in WANs?
Contour and Texture Analysis for Image Segmentation
Practical implementation of nonlinear time series methods: The TISEAN package
Exploring genomic dark matter: a critical assessment of the performance of homology search methods on noncoding RNA.
Encyclopedia of Knowledge Management
A simplex method for function minimization
A theory of lexical access in speech production
Grid information services for distributed resource sharing
The New Bioinformatics: Integrating Ecological Data from the Gene to the Biosphere
Cell Fates as High-Dimensional Attractor States of a Complex Gene Regulatory Network
The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo.
The Gaggle: An open-source software system for integrating bioinformatics software and data sources
Social Networks and Social Information Filtering on Digg
Social Browsing on Flickr
Social networks, incentives, and search
Code: And Other Laws of Cyberspace, Version 2.0
Introduction to Graph Theory
RCV1: A New Benchmark Collection for Text Categorization Research
Personalized recommendation driven by information flow
Administrative Behavior: A study of decision-making processes in administrative organizations
Formalizing conceptual spaces
A Tutorial on Energy-Based Learning
Selected Topics in Column Generation
Population coding of shape in area V4.
Revisiting the Commons: Local Lessons, Global Challenges
An Introduction into the Feynman Path Integral
Empathy for pain involves the affective but not sensory components of pain.
Indirect reciprocity can stabilize cooperation without the second-order free rider problem
Agents in Bioinformatics, Computational and Systems Biology
By Carrot or by Stick: Cognitive Reinforcement Learning in Parkinsonism
SNIF-ACT: A Model of Information Foraging on the World Wide Web
Understanding and using the medical subject headings (MeSH) vocabulary to perform literature searches.
Complex systems: Network thinking
Virtual Network Computing
Parallel coordinates: a tool for visualizing multi-dimensional geometry
Top-down facilitation of visual recognition
ATPC: adaptive transmission power control for wireless sensor networks
Sequence information can be obtained from single DNA molecules
Social semantics: Altruism, cooperation, mutualism, strong reciprocity and group selection
Towards a unified science of cultural evolution
Performance Evaluation of the IEEE 802.16 MAC for QoS Support
A Cross-Layer (Layer 2 + 3) Handoff Management Protocol for Next-Generation Wireless Systems
Seamless live migration of virtual machines over the MAN/WAN
The Network Structure of Social Capital
Dynamic causal modeling: A generative model of slice timing in fMRI
Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene
Clustering of housekeeping genes provides a unified model of gene order in the human genome
Transcriptional Regulatory Elements in the Human Genome
Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 gene
Chromosome Conformation Capture Carbon Copy (5C): A massively parallel solution for mapping interactions between genomic elements
Capturing Chromosome Conformation
Structural Dynamics of Eukaryotic Chromosome Evolution
Statistical analysis of real-time PCR data
Spikes: Exploring the Neural Code
A Review of the Literature on Portfolios and Electronic Portfolios
Development of measures of online privacy concern and protection for use on the Internet.
Confronting the Challenges of Participatory Culture: Media Education for the 21st Century
iHOPerator: user-scripting a personalized bioinformatics Web, starting with the iHOP website.
A Practical Approach to Recognizing Physical Activities
Transcriptional Regulation by Competing Transcription Factor Modules
RNAs everywhere: genome-wide annotation of structured RNAs.
Using diode lasers for atomic physics
Communication In The Presence Of Noise
Why is Open Access Development so Successful? Stigmergic organization and the economics of information
{Learning by imitation: a hierarchical approach.}
Neural mechanisms of empathy in humans: A relay from neural systems for imitation to limbic areas
Mining Quantitative Association Rules in Large Relational Tables
{Wide area traffic: the failure of Poisson modeling}
Adaptive Fuzzy Control for Inter-Vehicle Gap Keeping.
An Introduction to High-Frequency Finance
SENSE: Sensitivity encoding for fast MRI
The Library as Place: History, Community, and Culture
Providing artifact awareness to a distributed group through screen sharing
Link Prediction using Supervised Learning
Comparison of multiple Amber force fields and development of improved protein backbone parameters.
Large-Scale Sequencing Reveals 21U-RNAs and Additional MicroRNAs and Endogenous siRNAs in C. elegans
Measuring perceived sociability of computer-supported collaborative learning environments
Adaptive reconfiguration of fractal small-world human brain functional networks
Community-Driven Ontology Evolution Based on Folksonomies
Genomic Gene Clustering Analysis of Pathways in Eukaryotes
The Laws of Simplicity (Simplicity: Design, Technology, Business, Life)
Global analysis of microRNA target gene expression reveals that miRNA targets are lower expressed in mature mouse and Drosophila tissues than in the embryos.
The generalized distributive law
Learning {B}ayesian networks is {NP}-hard
Variable neighborhood search
Exchange {M}onte {C}arlo method and application to spin glass simulations
Computational design of protein-protein interactions
Niching methods for genetic algorithms
An obesity-associated gut microbiome with increased capacity for energy harvest
Microbial ecology: Human gut microbes associated with obesity
Synaptic mechanisms of synchronized gamma oscillations in inhibitory interneuron networks
Mining Frequent Patterns without Candidate Generation: A Frequent-Pattern Tree Approach
Illuminating the silence: understanding the structure and function of small RNAs
Mass Digitization of Books
The Cambridge Handbook of the Learning Sciences
The Cambridge Handbook of Multimedia Learning
Radiation Pressure Cooling of a Micromechanical Oscillator Using Dynamical Backaction
Constraints on Statistical Language Learning
The assessment and analysis of handedness: The Edinburgh inventory
Enzyme-Free Nucleic Acid Logic Circuits
Incentive Systems: A Theory of Organizations
k-core organization of complex networks
Zipf's law for cities: an explanation
Lehninger Principles of Biochemistry
The fourth dimension of life: fractal geometry and allometric scaling of organisms
Computational prediction of cancer-gene function.
Don't look stupid: avoiding pitfalls when recommending research papers
The interaction networks of structured RNAs
Semi-supervised methods to predict patient survival from gene expression data.
Object tracking: A survey
The Pragmatics of Information Retrieval Experimentation, Revisited
Using Statistical Testing in the Evaluation of Retrieval Experiments
Direct Manipulation Interfaces
Cross-species analysis of biological networks by Bayesian alignment
A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana.
Models and issues in data stream systems
Crackling noise
The supermatrix approach to systematics
The human infrastructure of cyberinfrastructure
AwareMedia: a shared interactive display supporting social, temporal, and spatial awareness in surgery
"Re-space-ing place: ""place"" and ""space"" ten years on"
A grounded theory of information sharing behavior in a personal learning space
Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation.
Convergent adaptation of human lactase persistence in Africa and Europe
Elementary Number Theory
A public-key infrastructure for key distribution in TinyOS based on elliptic curve cryptography
Understanding learning in social movements: a theory of collective learning
Coordinated memory replay in the visual cortex and hippocampus during sleep
The Body Multiple: Ontology in Medical Practice (Science and Cultural Theory)
Biocapital: The Constitution of Postgenomic Life
Relating three-dimensional structures to protein networks provides evolutionary insights.
A Family of MicroRNAs Present in Plants and Animals
Microfluidic Digital PCR Enables Multigene Analysis of Individual Environmental Bacteria
Integrative molecular concept modeling of prostate cancer progression
Systematic meta-analyses of Alzheimer disease genetic association studies: the AlzGene database.
{Telos: enabling ultra-low power wireless research}
Cultural Differences in Collaborative Authoring of Wikipedia
IndexFinder: a method of extracting key concepts from clinical texts for indexing.
The practical impact of ontologies on biomedical informatics.
Distance learning - Social software's killer ap?
A New Era in Citation and Bibliometric Analyses: Web of Science, Scopus, and Google Scholar
Accurate phylogenetic classification of variable-length DNA fragments.
Real-time computerized annotation of pictures
Wikipedias: Collaborative web-based encyclopedias as complex networks
Variability management with feature-oriented programming and aspects
Gesture and Thought
Improving accessibility of the web with a computer game
Coevolution of Strategy and Structure in Complex Networks with Dynamical Linking
Automatically Categorizing Written Texts by Author Gender
Spin echoes
A Systematic Review of Theory Use in Software Engineering Experiments
Nonparametric permutation tests for functional neuroimaging: a primer with examples.
How Do Committees Invent?
Task Complexity Affects Information Seeking and Use
Enhancing Teaching with Technology: Are We There Yet?
The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in Drosophila melanogaster.
A Virtual Reprise of the Stanley Milgram Obedience Experiments
Learning to Act using Real-Time Dynamic Programming
Structures that work: social structure, work structure and coordination ease in geographically distributed teams
Identification of coordination requirements: implications for the Design of collaboration and awareness tools
Negotiating presence-in-absence: contact, content and context
Repression of protein synthesis by miRNAs: how many mechanisms?
Direct estimation of per nucleotide and genomic deleterious mutation rates in Drosophila.
From sensation to cognition
Neural mechanisms of addiction: the role of reward-related learning and memory.
PolymiRTS Database: linking polymorphisms in microRNA target sites with complex traits.
Canonical sampling through velocity rescaling
Egocentric and sociocentric measures of network centrality
Dynamic Software Updating
Rhythms of the Brain
Continuum crowds
Comparison of Shape-Matching and Docking as Virtual Screening Tools
Language, music, syntax and the brain
Territoriality in collaborative tabletop workspaces
GENECODIS: a web-based tool for finding significant concurrent annotations in gene lists.
Efficient Detection of Network Motifs
Probabilistic models of language processing and acquisition
Statistical properties of sampled networks
The Stanford Microarray Database: implementation of new analysis tools and open source release of software.
ArrayExpress--a public database of microarray experiments and gene expression profiles.
NCBI GEO: mining tens of millions of expression profiles--database and tools update.
Reconciling Classical and Individual-Based Approaches in Theoretical Population Ecology: A Protocol for Extracting Population Parameters from Individual-Based Models
Exploiting the co-evolution of interacting proteins to discover interaction specificity.
The process of community-building in distance learning classes
Bibliothek 2.0 - Die Zukunft der Bibliothek?
Decoding seen and attended motion directions from activity in the human visual cortex
Signal processing techniques in network-aided positioning: a survey of state-of-the-art positioning designs
Understanding SAGE data
Ensemble forecasting of species distributions
SNPchip: R classes and methods for SNP array data
Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation
Mixed Methods Research: A Research Paradigm Whose Time Has Come
An Adaptation of the Vector-Space Model for Ontology-Based Information Retrieval
Investigating interactions of trust and interest similarity
MicroRNAs: small RNAs with a big role in gene regulation
Empirical Bayes Analysis of a Microarray Experiment
Face Recognition by Humans: Nineteen Results All Computer Vision Researchers Should Know About
Games with a Purpose
Structure-based maximal affinity model predicts small-molecule druggability
Reflective physical prototyping through integrated design, test, and analysis
Experimental models for validating technology
Large-Scale Mapping and Validation of Escherichia coli Transcriptional Regulation from a Compendium of Expression Profiles
A survey of autonomic communications
Compilers: Principles, Techniques, and Tools (2nd Edition)
Prefrontal involvement in the regulation of emotion: convergence of rat and human studies
AGBNP: an analytic implicit solvent model suitable for molecular dynamics simulations and high-resolution modeling.
A hitchhiker's guide to expressed sequence tag (EST) analysis
Bacterial regulatory networks are extremely flexible in evolution
The Quantitative Genetics of Transcription
Evolution of Digital Organisms at High Mutation Rates Leads to Survival of the Flattest
Transport optimization on complex networks
NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
MINT: the Molecular INTeraction database.
IntAct--open source resource for molecular interaction data.
STRING 7Ã¢Â€Â”recent developments in the integration and prediction of protein interactions
The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution
IDconverter and IDClight: conversion and annotation of gene and protein IDs.
Robust estimators for expression analysis
Classes of complex networks defined by role-to-role connectivity profiles
Eukaryotic regulatory RNAs: an answer to the â€˜genome complexityâ€™ conundrum
Structural Holes: The Social Structure of Competition
A survey on wireless multimedia sensor networks
Content-boosted collaborative filtering for improved recommendations
Ego network betweenness
Reproducibility of BOLD, perfusion, and CMRO(2) measurements with calibrated-BOLD fMRI.
Relemed: sentence-level search engine with relevance score for the MEDLINE database of biomedical articles
Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting
Challenges to estimating carbon emissions from tropical deforestation
Semiotic dynamics in online social communities
On How to Perform a Gold Standard based Evaluation of Ontology Learning
The Language of Folksonomies: What Tags Reveal About User Classification.
Emergent Semantics from Folksonomies: A Quantitative Study
A systems approach to measuring the binding energy landscapes of transcription factors.
Event-related EEG/MEG synchronization and desynchronization: basic principles.
Carbon-Negative Biofuels from Low-Input High-Diversity Grassland Biomass
NeXt generation/dynamic spectrum access/cognitive radio wireless networks: a survey
Online learners' preferences for interaction
The Matthew Effect in Science: The reward and communication systems of science are considered
Building learning communities in online courses: The importance of interaction
Darwin's dilemma: the realities of the Cambrian â€˜explosionâ€™
FaThumb: a facet-based interface for mobile search
Evolution after gene duplication: models, mechanisms, sequences, systems, and organisms.
Taverna: a tool for building and running workflows of services.
Taverna: lessons in creating a workflow environment for the life sciences: Research Articles
A Review of Statistical Approaches to Level Set Segmentation: Integrating Color, Texture, Motion and Shape
Multiple rare alleles contribute to low plasma levels of HDL cholesterol.
Common genetic variants account for differences in gene expression among ethnic groups.
Distributed Event-Based Systems
Ethnography: Principles in Practice
Discovering genotypes underlying human phenotypes: past successes for mendelian disease, future approaches for complex disease.
Prediction of effective genome size in metagenomic samples.
Biodiversity loss and the taxonomic bottleneck: emerging biodiversity science
MUSTANG: a multiple structural alignment algorithm.
Multidimensional binary search trees used for associative searching
Are rare variants responsible for susceptibility to complex diseases?
Linkage disequilibrium in the human genome
Genealogical trees, coalescent theory, and the analysis of genetic polymorphisms.
Gene discovery and annotation using LCM-454 transcriptome sequencing.
Tissue-specific regulatory elements in mammalian promoters.
Understanding photowork
Packet Routing in Dynamically Changing Networks: A Reinforcement Learning Approach
How do microRNAs regulate gene expression?
Understanding the recent evolution of the human genome: insights from human-chimpanzee genome comparisons
Exploration, normalization, and genotype calls of high-density oligonucleotide SNP array data.
Evolution of Transcription Factor Binding Sites in Mammalian Gene Regulatory Regions: Conservation and Turnover
Comparing spectra and coherences for groups of unequal size.
A consensus view of protein dynamics
The Generation of New Protein Functions by the Combination of Domains
A comparison of software and hardware techniques for x86 virtualization
Interpretation of multiple probe sets mapping to the same gene in Affymetrix GeneChips
Motifs for molecular recognition exploiting hydrophobic enclosure in proteinâ€“ligand binding
Solving the Distal Reward Problem through Linkage of STDP and Dopamine Signaling
Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions.
"A ""silent"" polymorphism in the MDR1 gene changes substrate specificity."
The Online Library Catalog: Paradise Lost and Paradise Regained?
The evolution of gene regulation by transcription factors and microRNAs
A multistep epigenetic switch enables the stable inheritance of DNA methylation states.
Computing Semantic Relatedness using Wikipedia-based Explicit Semantic Analysis
Personal Learning Environments - the future of eLearning?
A climate-change risk analysis for world ecosystems.
Ontology-based knowledge representation for bioinformatics
Critical Review of Published Microarray Studies for Cancer Outcome and Guidelines on Statistical Analysis and Reporting
Mutations affecting segment number and polarity in Drosophila.
Text-derived concept profiles support assessment of DNA microarray data for acute myeloid leukemia and for androgen receptor stimulation.
The evolution of domain arrangements in proteins and interaction networks.
The origins and evolution of functional modules: lessons from protein complexes.
Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis
Reconstructing dynamic regulatory maps.
A MITOCHONDRIAL PARADIGM OF METABOLIC AND DEGENERATIVE DISEASES, AGING, AND CANCER: A Dawn for Evolutionary Medicine
Clustering by Passing Messages Between Data Points
Extraction of gene-disease relations from Medline using domain dictionaries and machine learning.
SISYPHUS--structural alignments for proteins with non-trivial relationships.
Email Effects on the Structure of Local Associations: A Social Network Analysis
User modeling via stereotypes
Photo Tourism: Exploring Photo Collections in 3D
Exploring the common dynamics of homologous proteins. Application to the globin family.
Wandering Minds: The Default Network and Stimulus-Independent Thought
Breast Cancer Classification and Prognosis Based on Gene Expression Profiles from a Population-Based Study
Design and Analysis of Experiments
A learning algorithm for continually running fully recurrent neural networks
Publishing perishing? Towards tomorrow's information architecture
Enrichment or depletion of a GO category within a class of genes: which test?
A faster circular binary segmentation algorithm for the analysis of array CGH data.
Accurate GSM Indoor Localization
Coherent control of macroscopic quantum states in a single-Cooper-pair box
Modernity at large : cultural dimensions of globalization
A mitochondria-K+ channel axis is suppressed in cancer and its normalization promotes apoptosis and inhibits cancer growth.
Nonequilibrium Mechanics of Active Cytoskeletal Networks
Extending faceted navigation for RDF data
Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript
The Economics of Organization: The Transaction Cost Approach
Understanding packet delivery performance in dense wireless sensor networks
Statistical significance of cis-regulatory modules
Large-Scale Discovery of Promoter Motifs in Drosophila melanogaster
Concept Modeling by the Masses: Folksonomy Structure and Interoperability
What makes teams work: Group effectiveness research from the shop floor to the executive suite
"""Cloning Considered Harmful"" Considered Harmful"
Transcriptional regulation of protein complexes within and across species.
Biofeedback for robotic gait rehabilitation
Social bookmarks: Personal organization and collective discovery on the Web
Deleterious SNP prediction: be mindful of your training data!
Model use in phylogenetics: nine key questions
The Structure of the First Coordination Shell in Liquid Water
Modeling the evolution of protein domain architectures using maximum parsimony.
{Language as Shaped by the Brain}
Gene network interconnectedness and the generalized topological overlap measure
Estimate of the Mutation Rate per Nucleotide in Humans
Learning Domain Ontologies from Document Warehouses and Dedicated Web Sites
Empirical fitness landscapes reveal accessible evolutionary paths
Automated cell lineage tracing in Caenorhabditis elegans.
Commonality and variability in software engineering
â€˜Infotaxisâ€™ as a strategy for searching without gradients
Using GOstats to test gene lists for GO term association
Striped Smith-Waterman speeds database searches six times over other SIMD implementations
Biological network comparison using graphlet degree distribution
Data Analysis Using Regression and Multilevel/Hierarchical Models
{Semantic Web}
Recombination and the nature of bacterial speciation.
A Virus in a Fungus in a Plant: Three-Way Symbiosis Required for Thermal Tolerance
Benchmarking natural-language parsers for biological applications using dependency graphs
Bias in random forest variable importance measures: Illustrations, sources and a solution
Unsupervised and Supervised Machine Learning in User Modeling for Intelligent Learning Environments.
Information Extraction: Distilling Structured Data from Unstructured Text
L2L: a simple tool for discovering the hidden significance in microarray expression data
Switching from automatic to controlled action by monkey medial frontal cortex.
Made to Stick: Why Some Ideas Survive and Others Die
Case Study Research: Design and Methods (Applied Social Research Methods)
Qualitative Research & Evaluation Methods
Maximizing Versus Satisficing: Happiness Is a Matter of Choice
Recent developments of the chemistry development kit (CDK) - an open-source java library for chemo- and bioinformatics.
Genetic parts to program bacteria
Characterization and predictive discovery of evolutionarily conserved mammalian alternative promoters.
Predicting tissue-specific enhancers in the human genome
Computational Aspects of Feedback in Neural Circuits.
Mediating intimacy: designing technologies to support strong-tie relationships
Repeated Recruitment of LTR Retrotransposons as Promoters by the Anti-Apoptotic Locus NAIP during Mammalian Evolution
Tagging, Folksonomy &amp; Co - Renaissance of Manual Indexing?
Assessment of phylogenomic and orthology approaches for phylogenetic inference.
SemRank: ranking complex relationship search results on the semantic web
Ontology-based personalized search and browsing
Probabilistic diffusion tractography with multiple fibre orientations: What can we gain?
THE NEURAL BASIS OF TEMPORAL PROCESSING
Learning and Incorporating Top-Down Cues in Image Segmentation
The Neural Basis of Loss Aversion in Decision-Making Under Risk
Systematic pathway analysis using high-resolution fitness profiling of combinatorial gene deletions
Regression Models and Life-Tables
Optimizing web search using web click-through data
Structure and function of visual area MT
A survey of content-based image retrieval with high-level semantics
{Cumulated gain-based evaluation of IR techniques}
Agent-based Simulation Platforms: Review and Development Recommendations
Principal component analysis for clustering gene expression data
Gene Structure Prediction by Linguistic Methods
The Image Processing Handbook
{Using CLUSTAL for multiple sequence alignments}
An information-based sequence distance and its application to whole mitochondrial genome phylogeny
The clonal evolution of tumor cell populations
{A practical method for calculating largest Lyapunov exponents from small data sets}
Principles of Data Mining
Universal Behavior in a Generalized Model of Contagion
The Landscape of Parallel Computing Research: A View from Berkeley
Visual Interpretation of Hand Gestures for Human-Computer Interaction: A Review
Provocative Awareness
Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments
Shifts in Coding Properties and Maintenance of Information Transmission during Adaptation in Barrel Cortex.
Metabolic networks in motion: 13C-based flux analysis
A fast algorithm for particle simulations
Eclat: Automatic generation and classification of test inputs
{The Digitization of Word of Mouth: Promise and Challenges of Online Feedback Mechanisms}
Color naming reflects optimal partitions of color space.
Looking for Information, Second Edition: A Survey of Research on Information Seeking, Needs, and Behavior (Library and Information Science)
Do incentives build robustness in BitTorrent?
Classification of microarray data using gene networks
Multiple sequence alignment: In pursuit of homologous DNA positions
Extensions to gene set enrichment
Robustness Can Evolve Gradually in Complex Regulatory Gene Networks with Varying Topology
Semiotic dynamics and collaborative tagging
Parallel evolution of conserved non-coding elements that target a common set of developmental regulatory genes from worms to humans
FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin
Ethnicity, Insurgency, and Civil War
Collecting community wisdom: integrating social search \& social navigation
Talk amongst yourselves: inviting users to participate in online conversations
Knowledge Sharing Behavior from Game Theory and Socio-Psychology Perspectives
Regulation of Drosophila Life Span by Olfaction and Food-Derived Odors
Reconstructing gene-regulatory networks from time series, knock-out data, and prior knowledge
Context-Aware, adaptive information retrieval for investigative tasks
"A method for using blocked and event-related fMRI data to study ""resting state"" functional connectivity."
RelEx--relation extraction using dependency parse trees.
Bayesian Estimation of Concordance among Gene Trees
Optimizing Fragment and Scaffold Docking by Use of Molecular Interaction Fingerprints
Resolution limit in community detection
A semiempirical free energy force field with charge-based desolvation.
Using annotations in enterprise search
Comparison of Human Protein-Protein Interaction Maps.
An internal model for sensorimotor integration.
Harmonic balance in delay-differential equations
The Psychological Consequences of Money
Kernel Methods in Machine Learning
Potenziale von Web 2.0 nutzen
A method for comparing group fMRI data using independent component analysis: application to visual, motor and visuomotor tasks.
Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae.
The Social Structure of Tagging Internet Video on del.icio.us
Combining textual and visual cues for content-based image retrieval on the World Wide Web
Automatic multimedia cross-modal correlation discovery
Differential signaling via the same axon of neocortical pyramidal neurons
The energy landscapes and motions of proteins
Transcriptional noise and the fidelity of initiation by RNA polymerase II.
Joint action: bodies and minds moving together
Global reconstruction of the human metabolic network based on genomic and bibliomic data.
ACT: a web-based adaptive communication tool
Modeling single-neuron dynamics and computations: a balance of detail and abstraction.
A face(book) in the crowd: social Searching vs. social browsing
SVM-KNN: Discriminative Nearest Neighbor Classification for Visual Category Recognition
"The concept of ""Ba"": Building a Foundation for Knowledge Creation"
The molecular architecture of protein-protein binding sites.
Expertise Networks in Online Communities: Structure and Algorithms
Splicing and the Evolution of Proteins in Mammals
SNPassoc: an R package to perform whole genome association studies.
Distinct populations of primary and secondary effectors during RNAi in C. elegans.
Temporal event clustering for digital photo collections
FUNC: a package for detecting significant associations between gene sets and ontological annotations
Temporal Analysis of the Wikigraph
Games And Simulations in Online Learning: Research and Development Frameworks
High-throughput mapping of the chromatin structure of human promoters
Probabilistic Relevance Models Based on Document and Query Generation
Ten Commandments of Formal Methods ...Ten Years Later
From A to B in free energy space
{Natural categories}
Local Features and Kernels for Classification of Texture and Object Categories: A Comprehensive Study
Comparison of Software Product Line Architecture Design Methods: COPA, FAST, FORM, KobrA and QADA
Distributed and overlapping representations of faces and objects in ventral temporal cortex.
Relating protein pharmacology by ligand chemistry.
An African origin for the intimate association between humans and Helicobacter pylori
Dynamic spike threshold reveals a mechanism for synaptic coincidence detection in cortical neurons in vivo
Improved precision and accuracy for microarrays using updated probe set definitions
BioInfer: a corpus for information extraction in the biomedical domain
Relative impact of nucleotide and copy number variation on gene expression phenotypes.
Gaussian Processes for Machine Learning
EPISODIC MEMORY: From Mind to Brain
The Regulatory Code for Transcriptional Response Diversity and Its Relation to Genome Structural Properties in A. thaliana
SCaFoS: a tool for Selection, Concatenation and Fusion of Sequences for phylogenomics
Understanding the shape of Java software
Design and natural science research on information technology
A Design Theory for Systems that Support Emergent Knowledge Processes
On optimal and data-based histograms
First, Break All the Rules: What the World's Greatest Managers Do Differently
Yesterdayâ€™s tomorrows: notes on ubiquitous computingâ€™s dominant vision
The Philosophy of Information Retrieval Evaluation
Computer Architecture, Fourth Edition: A Quantitative Approach
{Yago: A Core of Semantic Knowledge}
Carbon Pools and Flux of Global Forest Ecosystems
Identification of the proliferation/differentiation switch in the cellular network of multicellular organisms.
The Human Connectome: A Structural Description of the Human Brain
Fabrication of microfluidic systems in poly(dimethylsiloxane).
Investigating health management practices of individuals with diabetes
{Complex adaptive systems}
A genome-wide association study identifies novel risk loci for type 2 diabetes.
The relationship between non-protein-coding DNA and eukaryotic complexity
Biological information specialists for biological informatics.
Justice, Nature and the Geography of Difference
Why People Punish Defectors Weak Conformist Transmission can Stabilize Costly Enforcement of Norms in Cooperative Dilemmas
Open Information Extraction from the Web
Locating Complex Named Entities in Web Text
Supporting interface customization using a mixed-initiative approach
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
Models and languages for parallel computation
A general approach to single-nucleotide polymorphism discovery.
Influences of Categorization on Perceptual Discrimination
Prediction Markets
Perceptual Learning
Collective minds
The genetic code is nearly optimal for allowing additional information within protein-coding sequences.
Dynamical principles in neuroscience
Supercontinuum generation in photonic crystal fiber
Metaproteomics approach to study the functionality of the microbiota in the human infant gastrointestinal tract.
Data merging for integrated microarray and proteomic analysis
Robust Object Recognition with Cortex-Like Mechanisms
High-Throughput Sequencing of Arabidopsis microRNAs: Evidence for Frequent Birth and Death of MIRNA Genes
Disk Failures in the Real World: What Does an MTTF of 1,000,000 Hours Mean to You?
Experimental Realization of Wheeler's Delayed-Choice Gedanken Experiment
Personalized search based on user search histories
UniFrac: a new phylogenetic method for comparing microbial communities.
Specificity and Evolvability in Eukaryotic Protein Interaction Networks
LDA-based document models for ad-hoc retrieval
Cluster-based retrieval using language models
Newsjunkie: providing personalized newsfeeds via analysis of information novelty
Corporate Blogging: Building community through persistent digital talk
Beyond standardization: dynamic software infrastructures for systems biology.
The evolutionary significance of cis-regulatory mutations
Improving novelty detection for general topics using sentence level information patterns
{Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals}
Adaptive information extraction
Neural Correlates of Processing Valence and Arousal in Affective Words
Analyzing gene expression data in terms of gene sets: methodological issues.
Diverse, High-Quality Test Set for the Validation of Proteinâˆ’Ligand Docking Performance
Local motions in a benchmark of allosteric proteins.
Failure Trends in a Large Disk Drive Population
K-means clustering via principal component analysis
Very high resolution interpolated climate surfaces for global land areas
A Taxonomy of Global Optimization Methods Based on Response Surfaces
Efficiency and cost of economical brain functional networks.
A Certified Type-Preserving Compiler from Lambda Calculus to Assembly Language
Formal certification of a compiler back-end or: programming a compiler with a proof assistant
Understanding and using the meaning of statements in a bio-ontology: recasting the Gene Ontology in OWL
Business {Process Management: A Survey}
Interest-based personalized search
Image Retrieval: Ideas, Influences, and Trends of the New Age
Duplicate Record Detection: A Survey
Market efficiency, long-term returns, and behavioral finance
{Network Applications of Bloom Filters: A Survey}
Over-Exposed? Privacy Patterns and Considerations in Online and Mobile Photo Sharing
Why We Tag: Motivations for Annotation in Mobile and Online Media
Essential properties of language, or, why language is not a code
A threshold selection method from gray-level histograms
How to infer gene networks from expression profiles
Distributed file systems: concepts and examples
Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map
{What is an Ontology}
Finding Groups in Data: An Introduction to Cluster Analysis (Wiley Series in Probability and Statistics)
Object-Oriented Bayesian Networks
Bioclipse: an open source workbench for chemo- and bioinformatics
The O-Ring Theory of Economic Development
Representing concerns in source code
A formal model of services
Using Higher-Taxon Richness as a Surrogate for Species Richness: II. Local Applications
The Evolution of Cooperation: Revised Edition
The Mammalian Epigenome
Factor analysis for gene regulatory networks and transcription factor activity profiles
Model-based analysis of tiling-arrays for ChIP-chip.
The C++ Programming Language: Special Edition
Population Structure and Eigenanalysis
Science for the post-normal age
Clustering user queries of a search engine
Eigenbehaviors: Identifying Structure in Routine
The Emergence of Dynamical Social Psychology
Evolutionary Conditions for the Emergence of Communication in Robots
Sexual selection and speciation
A High-Performance Semi-Supervised Learning Method for Text Chunking
Quantitative Phylogenetic Assessment of Microbial Communities in Diverse Environments
Modeling context through domain ontologies
Noncoding RNAs and Gene Silencing
Genomic Relationships and Speciation Times of Human, Chimpanzee, and Gorilla Inferred from a Coalescent Hidden Markov Model
ReMarkables: A Web-Based Research Collaboration Support System Using Social Bookmarking Tools
Identification of functional modules using network topology and high-throughput data
{Collaborative information retrieval in an information-intensive domain}
{Simulation Modeling and Analysis}
Hippocampal remapping and grid realignment in entorhinal cortex
High-throughput oncogene mutation profiling in human cancer
Blogs in Campaign Communication
The Power and Politics of Blogs
Stumbling, bumbling, teleporting and flying? librarian avatars in Second Life: selected bibliography
Quantifying similarity between motifs.
Revising how the computer program cervus accommodates genotyping error increases success in paternity assignment
Digital libraries and the future of the library profession
Assembling millions of short DNA sequences using SSAKE
Building Quality Assurance into Metadata Creation: an Analysis based on the Learning Objects and e-Prints Communities of Practice
Minimus: a fast, lightweight genome assembler
Chatting with teenagers: Considering the place of chat technologies in teen life
An impossibility theorem for clustering
A unified approach to global program optimization
Clique percolation in random networks.
Tussle in cyberspace: defining tomorrow's internet
Growth of novel protein structural data
Assessing the Value of Coooperation in Wikipedia
Collective Cooling and Self-Organization of Atoms in a Cavity
Defining a session on Web search engines
Composing Specifications
Human polymorphism at microRNAs and microRNA target sites
Harnessing homologous recombination in vitro to generate recombinant DNA via SLIC
Learning by tagging: group knowledge formation in a self-organizing learning community
Fish'n'Steps: Encouraging Physical Activity with an Interactive Computer Game
Crowds: Anonymity for Web Transactions
Aggregating inconsistent information: ranking and clustering
A personalized collaborative digital library environment: a model and an application
Designing audio aura
A general model of software architecture design derived from five industrial approaches
Multiple structural alignment and clustering of RNA sequences
Strong coupling of a single photon to a superconducting qubit using circuit quantum electrodynamics
How HCI Interprets the Probes
Ultra-high-Q toroid microcavity on a chip
Optical microcavities
How Designers Think, Fourth Edition: The Design Process Demystified
The structure of suspended graphene sheets
A decade of fragment-based drug design: strategic advances and lessons learned
"Understanding ""Internet plagiarism"""
Inference of miRNA targets using evolutionary conservation and pathway analysis.
A Review of Methods for Correction of Intensity Inhomogeneity in MRI
The emerging WebÂ 2.0 social software: an enabling suite of sociable technologies in health and health care education1
Linear optical quantum computing with photonic qubits
{Risk as Analysis and Risk as Feelings: Some Thoughts about Affect, Reason, Risk, and Rationality}
{Distributed Cognition:: Where the Cognitive and the Social Merge}
OpenID 2.0: a platform for user-centric identity management
Principles of Critical Discourse Analysis
Tagging, Folksonomy & Co - Renaissance of Manual Indexing?
LOCUS: learning object classes with unsupervised segmentation
Object categorization by learned universal visual dictionary
Recurrence plots for the analysis of complex systems
DSM-IV-TR : diagnostic and statistical manual of mental disorders.
Exploring the Quantum: Atoms, Cavities, and Photons (Oxford Graduate Texts)
Bayesian Model Selection in Social Research
Cavity quantum electrodynamics
Understanding Navigability of Social Tagging Systems
Regulatory circuit of human microRNA biogenesis
What is Web 2.0? Ideas, technologies and implications for education
Multi Label Classification: An Overview
Thoughtful Interaction Design: A Design Perspective on Information Technology
Principles of Optics: Electromagnetic Theory of Propagation, Interference and Diffraction of Light (7th Edition)
Does an interface with less assistance provoke more thoughtful behavior?
Neuronal Computations with Stochastic Network States
Small-World Anatomical Networks in the Human Brain Revealed by Cortical Thickness from MRI.
The Optical Properties of Metal Nanoparticles:â€‰ The Influence of Size, Shape, and Dielectric Environment
Comparative genome assembly.
Hierarchical Scaffolding With Bambus
Fast normalized cross-correlation
Rotation Invariant Spherical Harmonic Representation of 3D Shape Descriptors
Skeleton based shape matching and retrieval
Optimized Link State Routing Protocol (OLSR
Semi-public displays for small, co-located groups
The Java Context Awareness Framework (JCAF) â€“ A Service Infrastructure and Programming Framework for Context-Aware Applications
Single-Molecule Fluorescence Resonance Energy Transfer
Finding novel genes in bacterial communities isolated from the environment
Map learning with uninterpreted sensors and effectors
Identifying bacterial genes and endosymbiont DNA with Glimmer
{Heterogeneity and Network Structure in the Dynamics of Diffusion: Comparing Agent-Based and Differential Equation Models}
Reverse Methanogenesis: Testing the Hypothesis with Environmental Genomics
Using pyrosequencing to shed light on deep mine microbial ecology.
Acting with Technology: Activity Theory and Interaction Design (Acting with Technology)
A human phenome-interactome network of protein complexes implicated in genetic disorders
Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria
Patterns of somatic mutation in human cancer genomes
Bayesian meta-analysis models for microarray data: a comparative study
Cinteny: flexible analysis and visualization of synteny and genome rearrangements in multiple organisms
Sensemaking in Organizations
Understanding Knowledge as a Commons: From Theory to Practice
GAPWM: a genetic algorithm method for optimizing a position weight matrix
Factors influencing publication choice: why faculty choose open access.
Hawkeye: an interactive visual analytics tool for genome assemblies
Identification of plant promoter constituents by analysis of local distribution of short sequences
pcaMethods a bioconductor package providing PCA methods for incomplete data
A Hierarchical Bayesian Model of Invariant Pattern Recognition in the Visual Cortex
Assessing the probability that a positive report is false: an approach for molecular epidemiology studies.
OntoWiki - A Tool for Social, Semantic Collaboration
Learning implicit user interest hierarchy for context in personalization
A review of research on the impact of professional learning communities on teaching practice and student learning
A new method to measure the semantic similarity of GO terms.
Consensus and Cooperation in Networked Multi-Agent Systems
Semantic MediaWiki
Foafing the Music: Bridging the Semantic Gap in Music Recommendation
Attentional load modulates responses of human primary visual cortex to invisible stimuli.
The rise of graphene
Asymmetric Division of Labor in Human Skilled Bimanual Action: The Kinematic Chain as a Model
An implicit feedback approach for interactive information retrieval
Discriminative models for information retrieval
Personalized {W}eb Search For Improving Retrieval Effectiveness
Predicting query performance
Query expansion using random walk models
Two-stage language models for information retrieval
Actions and Events in Interval Temporal Logic
The protection of information in computer systems
Information Theory Primer
Patterns and Inconsistencies in Collaborative Tagging Systems: An Examination of Tagging Practices
A global test for groups of genes: testing association with a clinical outcome
Random Packings of Frictionless Particles
Finding the needles in the metagenome haystack.
An Enquiry Concerning Human Understanding
From Shared Databases to Communities of Practice: A Taxonomy of Collaboratories
Action-Video-Game Experience Alters the Spatial Resolution of Vision
Designing biological systems.
Genetical genomics: use all data
Self-Consistent Equations Including Exchange and Correlation Effects
Reconstructing genetic ancestry blocks in admixed individuals.
Automatic recognition of multi-word terms:. the C-value/NC-value method
Methods of automatic term recognition: a review
Active Shape Models-Their Training and Application
The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific.
Adaptation: from single cells to BOLD signals.
EnsMart: a generic system for fast and flexible access to biological data.
Facetag: Integrating Bottom-up and Top-down Classification in a Social Tagging System (*)
Too much information
Innateness and culture in the evolution of language
PVFS: {A} Parallel File System for Linux Clusters
The Epigenomics of Cancer
Network-based prediction of protein function
Efficient step size selection for the tau-leaping simulation method.
Spontaneous separation of bi-stable biochemical systems into spatial domains of opposite phases.
A component-based simulation layer for {JAMES}
S{{TOCHSIM}}: modelling of stochastic biomolecular processes.
A multi-algorithm, multi-timescale method for cell simulation
Binomial leap methods for simulating stochastic chemical kinetics.
Evolution and the latitudinal diversity gradient: speciation, extinction and biogeography
Personalized Content Retrieval in Context Using Ontological Knowledge
Characterization and Identification of MicroRNA Core Promoters in Four Model Species
Regulation of metabolic networks by small molecule metabolites
Optical Constants of the Noble Metals
A core transcriptional network for early mesoderm development in Drosophila melanogaster
Whole-genome ChIP-chip analysis of Dorsal, Twist, and Snail suggests integration of diverse patterning processes in the Drosophila embryo.
Visual routines
Self-organized lane formation and optimized traffic flow in army ants
Learning generative visual models from few training examples: An incremental Bayesian approach tested on 101 object categories
The Difference: How the Power of Diversity Creates Better Groups, Firms, Schools, and Societies
The Marine Viromes of Four Oceanic Regions
The Complexity of Decentralized Control of Markov Decision Processes
Trading Structure for Randomness in Wireless Opportunistic Routing
Feature-Oriented Development of Software Product Lines: Mapping Feature Models to the Architecture
Geospatial Semantics: Why, of What, and How?
Scale-Free and Hierarchical Structures in Complex Networks
Comparison of quantum and semiclassical radiation theories with application to the beam maser
A{SPIC}: a web resource for alternative splicing prediction and transcript isoforms characterization.
Voyagers and Voyeurs: supporting asynchronous collaborative information visualization
Genetic structure of chimpanzee populations
Global Discriminative Learning for Higher-Accuracy Computational Gene Prediction
QEMU, a Fast and Portable Dynamic Translator
Evidence of spatially bound gene regulation in Mus musculus: Decreased gene expression proximal to microRNA genomic location.
Inhibited Spontaneous Emission
Cancer epigenomics: DNA methylomes and histone-modification maps.
Environmental epigenomics and disease susceptibility
A Multilinear Singular Value Decomposition
Reactome: a knowledge base of biologic pathways and processes
Feature-based survey of model transformation approaches
Synonym search in Wikipedia: Synarcher
Multiple {DNA} and protein sequence alignment based on segment-to-segment comparison
{MAVID: Constrained Ancestral Alignment of Multiple Sequences}
Predicting protein-protein interactions based only on sequences information.
Breakdown of Functional Connectivity in Frontoparietal Networks Underlies Behavioral Deficits in Spatial Neglect
Stochastic Processes in Physics and Chemistry, Third Edition (North-Holland Personal Library)
SETTLE: An analytical version of the SHAKE and RATTLE algorithm for rigid water models
IT Doesn't Matter.
Functional Analysis of Gene Duplications in Saccharomyces cerevisiae
A model for the development of simple cell receptive fields and the ordered arrangement of orientation columns through activity-dependent competition between ON- and OFF-center inputs
A comprehensive survey of fitness approximation in evolutionary computation
Towards developing general models of usability with PARADISE
Accelerated evolution associated with genome reduction in a free-living prokaryote.
Odor cues during slow-wave sleep prompt declarative memory consolidation.
Limits on the memory storage capacity of bounded synapses.
Large-scale mapping of human protein-protein interactions by mass spectrometry.
Forecasting, structural time series models and the Kalman filter
Inference from iterative simulation using multiple sequences
{TD}-Gammon, a self-teaching backgammon program, achieves master-level play
The Unscented Kalman Filter
{The Scaled Unscented Transformation}
Monte carlo simulations of enzyme reactions in two dimensions: fractal kinetics and spatial segregation.
The slow-scale stochastic simulation algorithm.
Plasmonics: Localization and guiding of electromagnetic energy in metal/dielectric structures
Using Activity Theory to Model Context Awareness
Continuous generation of single photons with controlled waveform in an ion-trap cavity system
Discovering Statistics Using SPSS
What a difference copy number variation makes
Metabolic modeling of a mutualistic microbial community
Towards fully automated structure-based function prediction in structural genomics: a case study.
An Algorithmic Introduction to Numerical Simulation of Stochastic Differential Equations
A Survey of Web Information Extraction Systems
Expanding the Genetic Code
{Characterization and propagation of uncertainty in diffusion-weighted MR imaging}
{New approaches for exploring anatomical and functional connectivity in the human brain}
Reading hidden intentions in the human brain.
The role of status seeking in online communities: Giving the gift of experience
Uncovering transcriptional regulation of metabolism by using metabolic network topology
Real world research : a resource for social scientists and practitioner-researchers
Robust uncertainty principles: exact signal reconstruction from highly incomplete frequency information
How Doctors Think
Discovering Motifs in Ranked Lists of DNA Sequences
Posttranscriptional Expression Regulation: What Determines Translation Rates?
Network Coding for Wireless Mesh Networks: A Case Study
How emotion is made and measured
Least squares quantization in PCM
The folding and evolution of multidomain proteins
CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes
A large scale study of wireless search behavior: Google mobile search
Damage to the prefrontal cortex increases utilitarian moral judgements.
Temporal Frequency of Subthreshold Oscillations Scales with Entorhinal Grid Cell Field Spacing
Social software and the emergence of control
On the Security of Public Key Protocols
Plasmonics: Merging Photonics and Electronics at Nanoscale Dimensions
Google Scholar coverage of a multidisciplinary field
Global eQTL mapping reveals the complex genetic architecture of transcript-level variation in Arabidopsis.
Setting up and running molecular dynamics simulations of membrane proteins
Five Misunderstandings About Case-Study Research
Tunability and noise dependence in differentiation dynamics.
The Virtual Cell: a software environment for computational cell biology.
Quantitative cell biology with the Virtual Cell.
Physiological measures of presence in stressful virtual environments
Accelerometer-based gesture control for a design environment
The Wiki: an environment to revolutionise employees' interaction with corporate knowledge
Powering the planet: Chemical challenges in solar energy utilization
Pad++: A Zooming Graphical Interface for Exploring Alternate Interface Physics
Model Checking Programs
SuggestBot: using intelligent task routing to help people find work in wikipedia
Connectivity and complexity: the relationship between neuroanatomy and brain dynamics.
Gossip-Based Computation of Aggregate Information
Ranking Scientific Publications Using a Simple Model of Network Traffic
Atomic-level characterization of disordered protein ensembles
Analysis of a large fMRI cohort: Statistical and methodological issues for group analyses.
Weighted Graph Cuts without Eigenvectors A Multilevel Approach
{Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates}
An Introduction to Category Theory, Category Theory Monads, and Their Relationship to Functional Programming
A study of factors affecting the utility of implicit relevance feedback
A Multiscale Coarse-Graining Method for Biomolecular Systems
Sharing Detailed Research Data Is Associated with Increased Citation Rate
Content-based image retrieval: approaches and trends of the new age
collaborative filtering via gaussian probabilistic latent semantic analysis
Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome
The delayed rise of present-day mammals
A module of negative feedback regulators defines growth factor signaling
Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome
Use of General-purpose Negation Detection to Augment Concept Indexing of Medical Documents: A Quantitative Study using the UMLS
Introduction to the Special Issue on Summarization
UML as a cell and biochemistry modeling language.
Additional gene ontology structure for improved biological reasoning.
The Social and Technological Dimensions of Scaffolding and Related Theoretical Concepts for Learning, Education, and Human Activity
DNA Familial Binding Profiles Made Easy: Comparison of Various Motif Alignment and Clustering Strategies
Prediction of phenotype and gene expression for combinations of mutations
Pattern Recognition and Machine Learning
Ant colony optimization theory: A survey
Top-Down Versus Bottom-Up Control of Attention in the Prefrontal and Posterior Parietal Cortices
Dopamine-mediated regulation of corticostriatal synaptic plasticity.
Ten Simple Rules for a Successful Collaboration
The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging.
Systems biology and combination therapy in the quest for clinical efficacy
Dynamic itemset counting and implication rules for market basket data
Evaluating Costs of Conservation
Computational Design of Peptides That Target Transmembrane Helices
Multifractal detrended fluctuation analysis of nonstationary time series
uBioRSS: Tracking Taxonomic Literature Using RSS.
The Process of Emotion Inference
Educational data mining: A survey from 1995 to 2005
Generalizations of the clustering coefficient to weighted complex networks
Emergent Biogeography of Microbial Communities in a Model Ocean
Is abstraction the key to computing?
Interactive memory systems in the human brain
Transcript mapping with high-density oligonucleotide tiling arrays
Evolution of Social Behavior: Individual and Group Selection
Controlling the familywise error rate in functional neuroimaging: a comparative review
The implications of alternative splicing in the ENCODE protein complement.
Properties of Cage Rearrangements Observed near the Colloidal Glass Transition
Micro RNAs are complementary to 3â€² UTR sequence motifs that mediate negative post-transcriptional regulation
QuantiSNP: an Objective Bayes Hidden-Markov Model to detect and accurately map copy number variation using SNP genotyping data.
MODEL SELECTION IN PHYLOGENETICS
Bioinformatics approaches and resources for single nucleotide polymorphism functional analysis
A Simplest Systematics for the Organization of Turn-Taking for Conversation
Timely reminders: a case study of temporal guidance in PIM and email tools usage
Continuous auctions and insider trading
EDF Statistics for Goodness of Fit and Some Comparisons
Potent effect of target structure on microRNA function.
Managing Information Quality in Virtual Communities of Practice
High-resolution species trees without concatenation
From genes to functional classes in the study of biological systems.
[0704.0304] The World as Evolving Information
Intelligent Techniques for Web Personalization.
Teaching and learning with the Net Generation
Application of tetranucleotide frequencies for the assignment of genomic fragments
Quantifying social group evolution
Antibiotic interactions that select against resistance
Opportunistic content distribution in an urban setting
Brain Oscillations Control Timing of Single-Neuron Activity in Humans
A new perceptual illusion reveals mechanisms of sensory decoding
Multimodal fast optical interrogation of neural circuitry.
Comparative analysis indicates regulatory neofunctionalization of yeast duplicates.
An assessment of knowledge growth stages in organizations
Cultural group selection, coevolutionary processes and large-scale cooperation
Biskit--a software platform for structural bioinformatics.
Social Computing: From Social Informatics to Social Intelligence
The Mathematical Universe
Schemas and Memory Consolidation
The regulation of genes and genomes by small RNAs.
An Analysis of Transformations
The Unscented Kalman Filter for Nonlinear Estimation
Integration of Genome and Chromatin Structure with Gene Expression Profiles To Predict c-MYC Recognition Site Binding and Function
Identity-Based Encryption from the Weil Pairing
Web Information Retrieval in Collaborative Tagging Systems
Lifespan Regulation by Evolutionarily Conserved Genes Essential for Viability.
Guessing Facets: Polytope Structure and Improved LP Decoder
TagAssist: Automatic Tag Suggestion for Blog Posts
Patterns of influence in a recommendation network
The Black Swan: The Impact of the Highly Improbable
Supervised Learning of Semantic Classes for Image Annotation and Retrieval
Some studies in machine learning using the game of checkers
"Aberrant ""Default Mode"" Functional Connectivity in Schizophrenia"
Web 2.0: Werkzeuge fÃ¼r die Wissenschaft
Raptor codes
Group selection and kin selection: Two concepts but one process
Parachute use to prevent death and major trauma related to gravitational challenge: systematic review of randomised controlled trials.
Text classification and named entities for new event detection
Binding Site Graphs: A New Graph Theoretical Framework for Prediction of Transcription Factor Binding Sites
Genetic reconstruction of a functional transcriptional regulatory network
Combined climate and carbon-cycle effects of large-scale deforestation
Numerical Solution of Stochastic Differential Equations (Stochastic Modelling and Applied Probability)
A Thousand Years of Nonlinear History
Stochastic Differential Equations: An Introduction with Applications (Universitext)
BranchClust: a phylogenetic algorithm for selecting gene families
The Two Cultures Mashing up Web 2.0 and the Semantic Web
Enzyme promiscuity: mechanism and applications
Sketching User Experiences:  Getting the Design Right and the Right Design (Interactive Technologies)
Bayesian adaptive user profiling with explicit & implicit feedback
The Art Of Case Study Research
Model-based clustering for social networks
Evidence for wavelike energy transfer through quantum coherence in photosynthetic systems
Evolutionary and Biomedical Insights from the Rhesus Macaque Genome
Human-Specific Changes of Genome Structure Detected by Genomic Triangulation
Reversible state transfer between light and a single trapped atom
When does opportunistic routing make sense?
{Architectural Innovation: The Reconfiguration of Existing Product Technologies and the Failure of Established Firms}
The Rise and Rise of Citation Analysis
Systems biology by the rules: hybrid intelligent systems for pathway modeling and discovery
The Human Genomic Melting Map
Inferring Noncoding RNA Families and Classes by Means of Genome-Scale Structure-Based Clustering
Increasing the Power to Detect Causal Associations by Combining Genotypic and Expression Data in Segregating Populations
Reverse engineering cellular networks.
Analysis of epistatic interactions and fitness landscapes using a new geometric approach.
Bayesian methods in bioinformatics and computational systems biology
An Extended Set of Haar-like Features for Rapid Object Detection
PTAG: Large Scale Automatic Generation of Personalized Annotation TAGs for the Web
An Assessment of Tag Presentation Techniques
Neural Spike Sorting Under Nearly 0-dB Signal-to-Noise Ratio Using Nonlinear Energy Operator and Artificial Neural-Network Classifier
Investigating Causal Relations by Econometric Models and Cross-Spectral Methods
The origin of eukaryotes: a reappraisal.
Similar Binding Sites and Different Partners: Implications to Shared Proteins in Cellular Pathways
Computational redesign of protein-protein interaction specificity.
The mode and tempo of genome size evolution in eukaryotes
Organizational Information Requirements, Media Richness and Structural Design
Exploiting Social Annotation for Automatic Resource Discovery
Personalizing Image Search Results on Flickr
The role of ecological theory in microbial ecology
Novelty and Collective Attention
Researchersâ€™ Use of Academic Libraries and their Services: A report commissioned by the Research Information Network and the Consortium of Research Libraries
Exploring the Adoption, Utility, and Social Influences of Social Bookmarking in a Corporate Environment
Evolutionary origins of insulin resistance: a behavioral switch hypothesis.
A genome-scale computational study of the interplay between transcriptional regulation and metabolism
The elusive concept of brain connectivity.
Measurements of In-Motion 802.11 Networking
Bluetooth content distribution stations on public transit
Wetting: statics and dynamics
Pro Drupal Development
Understanding link quality in 802.11 mobile ad hoc networks
A Survey of Automated Web Service Composition Methods
Automating DAML-S Web Services Composition Using SHOP2
Origin and Evolution of Human microRNAs From Transposable Elements
The information-seeking practices of engineers: searching for documents as well as for people
Strong coupling in a single quantum dotâ€“semiconductor microcavity system
Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
Accuracy characterization for metropolitan-scale Wi-Fi localization
Developing inclusive e-learning and e-entertainment to effectively accommodate learning difficulties
An experimental test of non-local realism
Multiscale Modeling of Nucleosome Dynamics
Strong Association of De Novo Copy Number Mutations with Autism
A Synthetic Maternal-Effect Selfish Genetic Element Drives Population Replacement in Drosophila.
High Accuracy Optical Flow Estimation Based on a Theory for Warping
Assessing Performance of Orthology Detection Strategies Applied to Eukaryotic Genomes
Empirical Evaluation of User Models and User-Adapted Systems
Simple Memory: A Theory for Archicortex
Cognitive Linguistics:  An Introduction
Table of Contents
Stochastic resonance
A Single IGF1 Allele Is a Major Determinant of Small Size in Dogs
Espresso: leveraging generic patterns for automatically harvesting semantic relations
The cortical organization of speech processing
Relative location estimation in wireless sensor networks
The Mammalian Phenotype Ontology as a tool for annotating, analyzing and comparing phenotypic information
Neuronal Competition and Selection During Memory Formation
Predictive Statistical Models for User Modeling
Statistical significance of quantitative PCR.
Connecting protein structure with predictions of regulatory sites
Adaptation or biased gene conversion? Extending the null hypothesis of molecular evolution
The Importance of Bottlenecks in Protein Networks: Correlation with Gene Essentiality and Expression Dynamics
A Method for Selecting the Bin Size of a Time Histogram
Topic evolution and social interactions: how authors effect research
Visual features of intermediate complexity and their use in classification.
The Dissemination of Culture: A Model with Local Convergence and Global Polarization
A Quantum Dot Single-Photon Turnstile Device
Indistinguishable photons from a single-photon device
Organizational Knowledge Creation Theory: Evolutionary Paths and Future Advances
THE ROLE OF SOCIAL STRUCTURE IN THE MAINTENANCE OF COOPERATIVE REGIMES
Agent-based computational models and generative social science
An All-Optical Trap for a Gram-Scale Mirror
Neural Network Synthesis using Cellular Encoding and the Genetic Algorithm.
Extracting social networks and contact information from email and the web
GoMiner: a resource for biological interpretation of genomic and proteomic data
Modelling biological complexity: a physical scientistâ€™s perspective
Conservation of Regional Gene Expression in Mouse and Human Brain
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox
Many-Body Physics with Ultracold Gases
Theory of Ground State Cooling of a Mechanical Oscillator Using Dynamical Backaction
Revealing static and dynamic modular architecture of the eukaryotic protein interaction network
Forest Edges as Nutrient and Pollutant Concentrators: Potential Synergisms between Fragmentation, Forest Canopies, and the Atmosphere
The Library Catalog in a 2.0 World
Information Needs in Collocated Software Development Teams.
Growth, innovation, scaling, and the pace of life in cities
Opportunistic networking: data forwarding in disconnected mobile ad hoc networks
Objectivity and Subjectivity in Knowledge Management: A Review of 20 Top Articles
Influence of human genome polymorphism on gene expression.
KawaWiki: A Semantic Wiki Based on RDF Templates
A library or just another information resource? A case study of users' mental models of traditional and digital libraries
Constrained dependencies
A Survey Of Genomic Properties For The Detection Of Regulatory Polymorphisms
Learning Conversations in World of Warcraft
A community based mobility model for ad hoc network research
A review of standards for data exchange within systems biology
Evolving Virtual Creatures and Catapults
Integrating Folksonomies with the Semantic Web
Improving clinical practice using clinical decision support systems: a systematic review of trials to identify features critical to success
Toward Objective Evaluation of Image Segmentation Algorithms
Multiple High-Throughput Analyses Monitor the Response of E. coli to Perturbations
An emerging synthesis between community ecology and evolutionary biology
String Theory on Calabi-Yau Manifolds
Network Properties of Folksonomies
Trend Detection in Folksonomies
Social Loafing: A Meta-Analytic Review and Theoretical Integration
Wikinomics: How Mass Collaboration Changes Everything
A laser-plasma accelerator producing monoenergetic electron beams
High-quality electron beams from a laser wakefield accelerator using plasma-channel guiding
Laser Electron Accelerator
Nonlinear Theory for Relativistic Plasma Wakefields in the Blowout Regime
Deciphering Proteinâ€“Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners
Workflow Control-Flow Patterns: A Revised View
Relevance feedback in image retrieval: A comprehensive review
Direct Optimization of Ranking Measures
Vocabulary growth in collaborative tagging systems
The Multinational Corporation as an Interorganizational Network
Editorial: Play and learn: potentials of game-based learning
Cyberinfrastructure Vision for 21st Century Discovery
"Everyday life information seeking: Approaching information seeking in the context of ""way of life"""
Conceptual Framework for Tasks in Information Studies
A computational perspective on the neural basis of multisensory spatial representations
Bacterial linguistic communication and social intelligence.
The Cog Project: Building a Humanoid Robot
Forming Sparse Representations by Local Anti-{H}ebbian Learning
Efficient Algorithms for Online Decision Problems
Intrinsic Motivation Systems for Autonomous Mental Development
An Introduction to Exponential Random Graph ($p^{*}$) Models for Social Networks
A General Theory of Bibliometric and Other Cumulative Advantage Processes
Effects of filtering by Present call on analysis of microarray experiments
Resilient Machines Through Continuous Self-Modeling
A Hybridization Model for the Plasmon Response of Complex Nanostructures
Growth control of the eukaryote cell: a systems biology study in yeast
Genomic control for association studies.
Overview of the H.264/AVC video coding standard
Specification and Analysis of System Architecture Using Rapide
Comparison of Multiobjective Evolutionary Algorithms: Empirical Results
A survey on software architecture analysis methods
A feedforward architecture accounts for rapid categorization
Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE.
Pre-processing Agilent microarray data
Composing Adaptive Software
Neural coding strategies in auditory cortex
Enabling high-throughput data management for systems biology: The Bioinformatics Resource Manager
Error bars in experimental biology.
Generic Programming
Everything is Miscellaneous: The Power of the New Digital Disorder
Institutional Repositories: Evaluating the Reasons for Non-use of Cornell University's Installation of DSpace
A Web Services Framework for Collaboration and Audio/Videoconferencing
Modularisation of domain ontologies implemented in description logics and related formalisms including OWL
{In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data}
Plasticity of genetic interactions in metabolic networks of yeast
Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters.
{A simple model of global cascades on random networks}
Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs
A neuronal model of a global workspace in effortful cognitive tasks
Conscious, preconscious, and subliminal processing: a testable taxonomy.
PHA-4/Foxa mediates diet-restriction-induced longevity of C. elegans
Intrinsic functional architecture in the anaesthetized monkey brain
Behavioral Intention Formation in Knowledge Sharing: Examining the Roles of Extrinsic Motivators, Social-Psychological Forces, and Organizational Climate
Validating module network learning algorithms using simulated data
Orbitofrontal cortex and its contribution to decision-making.
Critical phenomena in complex networks
Towards zoomable multidimensional maps of the cell
A familiar face(book): profile elements as signals in an online social network
Research through design as a method for interaction design research in HCI
Specificity in protein interactions and its relationship with sequence diversity and coevolution.
Speakable and Unspeakable in Quantum Mechanics: Collected Papers on Quantum Philosophy
Information Wants to Be Free: Intellectual Property and the Mythologies of Control
The language of covalent histone modifications
A Large-scale Evaluation and Analysis of Personalized Search Strategies
"Embracing ""Web 3.0"""
The link-prediction problem for social networks
Genome-Wide Association Analysis Identifies Loci for Type 2 Diabetes and Triglyceride Levels.
Evaluation of the dual route theory of reading: a metanalysis of 35 neuroimaging studies
Corporate social responsibility
Revisiting the edge of chaos: Evolving cellular automata to perform computations
New Methods for Competitive Coevolution
A search engine to identify pathway genes from expression data on multiple organisms
Introduction to Modern Statistical Mechanics
Which transposable elements are active in the human genome?
{The Architecture of Complexity}
Evolution at the system level: the natural history of protein interaction networks
MicroRNA regulation and interspecific variation of gene expression
Silhouettes: A graphical aid to the interpretation and validation of cluster analysis
Mental Training Affects Distribution of Limited Brain Resources
Typology of sociotechnical transition pathways
Fidelity and Yield in a Volcano Monitoring Sensor Network
SmartCell, a framework to simulate cellular processes that combines stochastic approximation with diffusion and localisation: analysis of simple networks
Assessing the Value of Cooperation in Wikipedia
Sparse non-negative matrix factorizations via alternating non-negativity-constrained least squares for microarray data analysis
Encoding of Movement Fragments in the Motor Cortex
Tracking User Attention in Collaborative Tagging Communities
Advanced Quantum Mechanics
Open user profiles for adaptive news systems: help or harm?
Investigating behavioral variability in web search
Internet-scale collection of human-reviewed data
The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families.
An Evaluation of Identity-Sharing Behavior in Social Network Communities
Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences
Graph evolution: Densification and shrinking diameters
Clinical terminology: why is it so hard?
A microRNA in a multiple-turnover RNAi enzyme complex.
Genome-wide transcription and the implications for genomic organization
A Picture of Search
The internet and social life
Virtual community attraction: Why people hang out online
Social capital: Its origins and applications in modern sociology
Strong, weak and latent ties and the impact of new media
Google news personalization: scalable online collaborative filtering
Scaling up all pairs similarity search
Optimizing web search using social annotations
Tools for Inventing Organizations: Toward a Handbook of Organizational Processes
Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites.
Phoneme recognition using time-delay neural networks
Human-Machine Reconfigurations: Plans and Situated Actions
Netprobe: a fast and scalable system for fraud detection in online auction networks
A content-driven reputation system for the wikipedia
Making mashups with marmite: towards end-user programming for the web
Biological impacts and context of network theory
Reconceptualizing users as social actors in information systems research
{Exploring Digital Libraries: Integrating Browsing, Searching, and Visualization}
Citeulike: A Researcher's Social Bookmarking Service
Wherefore art thou r3579x?: anonymized social networks, hidden patterns, and structural steganography
Exploring social dynamics in online media sharing
Frequent Pattern Mining: Current Status and Future Directions
A Fast Fixed-Point Algorithm for Independent Component Analysis
Assessing functional connectivity in the human brain by fMRI
Enterprise Architecture As Strategy: Creating a Foundation for Business Execution
Competitive Strategy: Techniques for Analyzing Industries and Competitors
A Systematic Approach to Domain-Specific Language Design Using UML
The development of scientific thinking skills in elementary and middle school
Analysing six types of protein-protein interfaces.
The amount of carbon released from peat and forest fires in Indonesia during 1997
Separate visual pathways for perception and action.
Orienting of attention.
Intrinsic disorder as a mechanism to optimize allosteric coupling in proteins
Extracting the hierarchical organization of complex systems
Scientific citations in Wikipedia
Tag-Cloud Drawing: Algorithms for Cloud Visualization
Semi-automated adaptation of service interactions
Multiscale conditional random fields for image labeling
Advancing translational research with the Semantic Web
Spatially Heterogeneous Dynamics in Supercooled Liquids
Stringlike Cooperative Motion in a Supercooled Liquid
Electronic and transport properties of nanotubes
On the Temperature Dependence of Cooperative Relaxation Properties in Glass-Forming Liquids
FASTDash: a visual dashboard for fostering awareness in software teams
Origins of major human infectious diseases
When to use features and aspects?: a case study
MicroRNA silencing through RISC recruitment of eIF6.
PseudoPipe: an automated pseudogene identification pipeline
Use of simulated data sets to evaluate the fidelity of metagenomic processing methods
Using Wikipedia to Extend Digital Collections
Optical dipole traps for neutral atoms
THE LOCUS OF EVOLUTION: EVO DEVO AND THE GENETICS OF ADAPTATION
Dynamical Heterogeneities in a Supercooled Lennard-Jones Liquid
Methods of Digital Video Microscopy for Colloidal Studies
Evolutionary Theorizing in Economics
The Increasing Dominance of Teams in Production of Knowledge
Cluster Ensembles -- A Knowledge Reuse Framework for Combining Multiple Partitions
Web 2.0 and Business: A pointer to the intranets of the future?
Microrheology from Rotational Diffusion of Colloidal Particles
Childhood Origins of Adult Resistance to Science
Optimization of Control Parameters for Genetic Algorithms
Completely Derandomized Self-Adaptation in Evolution Strategies
New developments in the InterPro database.
Global climate change adaptation: examples from Russian boreal forests
Model-based assessments of climate change effects on forests: A critical review
Space and time in visual context
Network motifs: theory and experimental approaches
Exploring genetic interactions and networks with yeast
Mammalian RNA polymerase II core promoters: insights from genome-wide studies.
Predictive Modeling of Signaling Crosstalk during C. elegans Vulval Development
{An Introduction to R}
{A Handbook of Statistical Analyses Using R}
{Deskriptive Statistik}
Formation of Glasses from Liquids and Biopolymers
Timing in the Absence of Clocks: Encoding Time in Neural Network States
An Introduction to Systems Biology: Design Principles of Biological Circuits (Chapman & Hall/CRC Mathematical & Computational Biology)
Getting connected: analysis and principles of biological networks
Resources for integrative systems biology: from data through databases to networks and dynamic system models
DNA TOPOISOMERASES: Structure, Function, and Mechanism
Representing, storing and accessing molecular interaction data: a review of models and tools.
Cooperation in evolving social networks.
Base-Calling of Automated Sequencer Traces UsingPhred.â€ƒI. Accuracyâ€‰Assessment
Base-Calling of Automated Sequencer Traces UsingPhred.â€ƒII. Errorâ€‰Probabilities
Unmasking Activation of the Zygotic Genome Using Chromosomal Deletions in the Drosophila Embryo
Answering Clinical Questions with Knowledge-Based and Statistical Techniques
Why Are There Still Over 1000 Uncharacterized Yeast Genes?
Trust and Nuanced Profile Similarity in Online Social Networks
Earth observations for estimating greenhouse gas emissions from deforestation in developing countries
Clearing the way for reducing emissions from tropical deforestation
Time in the mind: Using space to think about time
Rewiring cellular morphology pathways with synthetic guanine nucleotide exchange factors.
Coevolution of genomic intron number and splice sites
The frailty of adaptive hypotheses for the origins of organismal complexity
How the Brain Translates Money into Force: A Neuroimaging Study of Subliminal Motivation
Nonlinear spatial normalization using basis functions.
Ten Commandments for Effective Clinical Decision Support: Making the Practice of Evidence-based Medicine a Reality
Fitting Multivariate Models to Community Data: A Comment on Distance-Based Redundancy Analysis
The theory of facilitated variation.
Computation and Analysis of Genomic Multi-Sequence Alignments
A phylogenetic Gibbs sampler that yields centroid solutions for cis-regulatory site prediction
STAMP: a web tool for exploring DNA-binding motif similarities
Have Multilevel Models Been Structural Equation Models All Along?
The human disease network.
BioPP: A Tool for Web-publication of Biological Networks
Tips for Building Knowledge Infrastructures
Discovering objects and their location in images
Beyond phrenology: what can neuroimaging tell us about distributed circuitry?
Time Discounting for Primary Rewards
Global and regional drivers of accelerating CO2 emissions
Efficient mechanisms for bilateral trading
Human-mouse alignments with BLASTZ.
Mechanism of coupled folding and binding of an intrinsically disordered protein
Lateral habenula as a source of negative reward signals in dopamine neurons.
Phenotypic plasticity and the epigenetics of human disease
Epigenetic inheritance in plants
Nuclear organization of the genome and the potential for gene regulation
The complex language of chromatin regulation during transcription
Evaluating the role of natural selection in the evolution of gene regulation
{Activity Theory and Distributed Cognition: Or What Does CSCW Need to DO with Theories?}
GOSim - an R-package for computation of information theoretic GO similarities between terms and gene products
Genome Sequence of Aedes aegypti, a Major Arbovirus Vector
Adaptive, intelligent presentation of information for the museum visitor in PEACH
Bridging from molecular simulation to biochemical networks
An evaluation of human protein-protein interaction data in the public domain
New learning design in distance education: The impact on student perception and motivation
Predicting functionally important residues from sequence conservation
Semantic search of unstructured data using contextual network graphs
Analyzing and Accessing Wikipedia as a Lexical Semantic Resource
Mining Domain-Specific Thesauri from Wikipedia: A Case Study
Using Encyclopedic Knowledge for Named Entity Disambiguation
The complex dynamics of collaborative tagging
The reacTable: Exploring the Synergy between Live Music Performance and Tabletop Tangible Interfaces
Forces and Bond Dynamics in Cell Adhesion
Ten Simple Rules for a Good Poster Presentation
Probing Transcription Factor Dynamics at the Single-Molecule Level in a Living Cell
Modular architecture of protein structures and allosteric communications: potential implications for signaling proteins and regulatory linkages.
Survey of semantic annotation platforms
Global repeat discovery and estimation of genomic copy number in a large, complex genome using a high-throughput 454 sequence survey
Automatic Extraction of Semantic Relationships for WordNet by Means of Pattern Learning from Wikipedia
Give and Take: A Study of Consumer Photo-Sharing Culture and Practice
Frequent Gain and Loss of Functional Transcription Factor Binding Sites
Theory of high-harmonic generation by low-frequency laser fields
Bee diversity along a disturbance gradient in tropical lowland forests of south-east Asia
RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription
Musical intervals in speech.
Mixture models and exploratory analysis in networks
Single-molecule experiments in vitro and in silico.
Open Access Scientometrics and the UK Research Assessment Exercise
FLIPDock: Docking flexible ligands into flexible receptors
Bose-Einstein Condensation of Molecules
The importance of being discrete: Life always wins on the surface
Knowledge representation with ontologies: Present challenges--Future possibilities
From adaptive hypermedia to the adaptive web
Using ARROWSMITH: a computer-assisted approach to formulating and assessing scientific hypotheses
How to build and use agent-based models in social science
Agent-Based Simulation in the Study of Social Dilemmas
Genome-wide association study identifies novel breast cancer susceptibility loci.
A quantitative model for linking two disparate sets of articles in MEDLINE
The hardwiring of development: organization and function of genomic regulatory systems.
Relative rates of gene fusion and fission in multi-domain proteins.
Automated generation of heuristics for biological sequence comparison.
Research Approaches to Mobile Use in the Developing World: A Review of the Literature
A survey of advances in vision-based human motion capture and analysis
Heads or Tails: A Simple Reliability Check for Multiple Sequence Alignments
A Simple Model of Herd Behavior
Frustratingly Easy Domain Adaptation
Prediction of microRNA targets.
MiniSec: a secure sensor network communication architecture
Information theory in auditory research
Tissue-specific transcriptional regulation has diverged significantly between human and mouse
A comprehensive computational characterization of conserved mammalian intronic sequences reveals conserved motifs associated with constitutive and alternative splicing.
Evolutionarily conserved genes preferentially accumulate introns
Three distinct modes of intron dynamics in the evolution of eukaryotes.
Getting our head in the clouds: toward evaluation studies of tagclouds
Optimal execution of portfolio transactions
The role of microRNAs in cancer: No small matter.
A field study characterizing Web-based information-seeking tasks
Life-history trade-offs favour the evolution of animal personalities
A review of ontology based query expansion
The empirical mode decomposition and the {Hilbert} spectrum for nonlinear and non-stationary time series analysis
Integrating landscape and metapopulation modeling approaches: viability of the sharp-tailed grouse in a dynamic landscape.
Agroecology: the science of natural resource management for poor farmers in marginal environments.
The ecological role of biodiversity in agroecosystems.
Allelopathy as a tool in the management of biotic resources in agroecosystems
Distance-Based Tests for Homogeneity of Multivariate Dispersions.
A new method for non-parametric multivariate analysis of variance.
Floristic zonation of tree communities on wet tropical mountains revisited.
Exploring spatial vegetation dynamics using logistic regression and a multinomial logit model
Agent based simulation of a small catchment water management in northern Thailand description of the CATCHSCAPE model.
Agroecology of birds in organic and nonorganic farmland.
Ecology : From individuals to ecosystems.
Linking agricultural practice to insect and bird populations: a historical study over three decades
Land cover characterization of Temperate East Asia using multi-temporal VEGETATION sensor data.
Habitat models and their transfer for single and multi species groups: a case study of carabids in an alluvial forest
Mexicoâ€™s community-managed forests as a global model for sustainable landscapes.
Intraguild interactions in aphid parasitoids.
An improved method for the rapid assessment of forest understorey light environments
The assembly of local communities: Plants and birds in non-reclaimed mining sites
A plant trait analysis of responses to grazing in a long-term experiment
On the use of surrogate species in conservation biology.
Biotic control over the functioning of ecosystems
Developing policy-oriented curricula for conservation biology: professional and leadership education in the public interest.
Are urban bird communities influenced by the bird diversity of adjacent landscapes?
Fluctuating resources in plant communities: a general theory of invasibility.
Effects of the past and the present on species distribution: land-use history and demography of wintergreen.
A balanced view of scale in spatial statistical analysis
Health food versus fast food: the effects of prey quality and mobility on prey selection by a generalist predator and indirect interactions among prey species.
Complementarity, biodiversity viability analysis, and policy-based algorithms for conservation
Host-plant selection by insects â€“ a theory based on â€˜appropriate/inappropriate landingsâ€™ by pest insects of cruciferous plants.
Application of conservation biology research to management.
Validation tests of predictive models of butterfly occurrence based on environmental variables.
Are weed population dynamics chaotic?
Assessing biodiversity at landscape level in northern Thailand and Sumatra (Indonesia): the importance of environmental context.
The application of IUCN red list criteria at regional levels.
The role of plasticity in resource capture by plants
Visual debugging: a way of analyzing, understanding and communicating bottom-up simulation models in ecology.
Pattern-oriented modelling in population ecology.
META-X: generic software for metapopulation viability analysis.
Individual variability and population regulation: a model of the significance of within-generation density dependence.
The intrinsic mean time to extinction: a unifying approach to analysing persistence and viability of populations.
Individual-based modelling and ecological theory: synthesis of a workshop.
Scale dependency of rarity, extinction risk, and conservation priority.
Studying biodiversity on private lands.
Identifying a linked reserve system using a regional landscape approach: the florida ecological network.
Primary community assembly on land â€“ the missing stages: why are the heterotrophic organisms always there first?
Uncertainty and spatial linear models for ecological data.
History of vegetation and habitat change in the Austral-Asian region
Integrating economics into priority setting and evaluation in conservation management.
The accuracy of GPS for wildlife telemetry and habitat mapping
Statistische Datenanalyse mit SPSS fÃ¼r windows.
Responses of riparian plants to flooding in free-flowing and regulated boreal rivers: an experimental study
Viability and conservation of an exploited sage grouse population.
Accounting for spatial pattern when modeling organismenvironment interactions
How effective are European agri-environment schemes in conserving and promoting biodiversity?
Global patterns of environmental synchrony and the Moran effect
Grazing intensity and the diversity of grasshoppers, butterflies, and trap-nesting bees and wasps.
Habitat fragmentation, species loss and biological control.
Avoiding pitfalls of using species distribution models in conservation planning.
Biotic disturbance agents in the boreal forest: considerations for vegetation change models
Ecological consequences of recent climate change.
A Framework for conceptualizing human effects on landscapes and its relevance to management and research models.
Predation and parasitism in a tropical herbivore community
Predators, parasitoids and pathogens: species richness, trophic generality and body sizes in a natural food web.
Conservation where people live and work.
Reserve Selection Using Nonlinear Species Distribution Models
Policy responses to complex environmental problems: insights from a scienceâ€“policy activity on transboundary haze from vegetation fires in Southeast Asia.
Synopsis of the Tenthredinidae (Hymenoptera) in Australia, including two newly recorded, introduced sawfly species associated with willows (Salix spp.)
A checklist for wildlands network designs.
Local species richness of leaf-chewing insects feeding on woody plants from one hectare of a lowland rainforest.
A species-specific approach to modeling biological communities and its potential for conservation.
A Possible method for the rapid assessment of biodiversity
Fire and biodiversity: responses of grass-layer beetles to experimental fire regimes in an Australian tropical savanna
Modelling landscape-scale habitat use using GIS and remote sensing: a case study with great bustards
From Individual Behavior to Metapopulation Dynamics: Unifying the Patchy Population and Classic Metapopulation Models.
Effectiveness in conservation practice: pointers from medicine and public health.
Restoration of species-rich grassland on arable land: assessing the limiting processes using a multi-site experiment
Plant traits as predictors of performance in ecological restoration
Experimental design and data analysis for biologists.
Correlation equations and pair approximations for spatial ecologies.
Status review of the protected-area system in Myanmar, with recommendations for conservation planning.
Mapping the conservation landscape.
Beyond biology : toward a more public ecology for conservation.
A Multispecies Approach to Ecological Valuation and Conservation.
On the insularity of islands
New paradigms for modelling species distributions?
Improving the practice of conservation: a conceptual framework and research agenda for conservation science.
Functional response of a generalist insect predator to one of its prey species in the field.
An experimental test of the nature of predation: neither prey- nor ratio-dependent.
Communicating ecological Indicators to decision makers and the public.
Habitat loss, fragmentation and predator impact: spatial implications for prey conservation
Experimental Tests of the dependence of arthropod diversity on plant diversity
Evaluating great smoky mountains national park as a population source for the wood thrush.
Effects of prey quantity and quality on predatory wasps
The adequacy of collecting techniques for estimating species richness of grassland invertebrates
Vegetation response to grazing management in a Mediterranean herbaceous community: a functional group approach
An evaluation of three quick methods commonly used to assess sward height in ecology
Conflicts between lesser kestrel conservation and European agricultural policies as identified by habitat use analyses.
Animal species diversity driven by habitat heterogeneity/diversity: the importance of keystone structures.
Aerial activity of linyphiid spiders: modelling dispersal distances from meteorology and behaviour
Tactical monitoring of landscapes.
Choice of species-area function affects identification of hotspots.
Introduction strategies put to the test: local adaptation versus heterosis.
A multiscale analysis of LULC and NDVI variation in Nang Rong district, northeast Thailand
Mass flowering crops enhance pollinator densities at a landscape scale.
Using pattern-oriented modeling for revealing hidden information: a key for reconciling ecological theory and application.
The use of bayesian model averaging to better represent uncertainty in ecological models.
Three faces of ecosystem management.
Bootstrap confidence intervals
A Fast and Elitist multi-objective Genetic Algorithm: {NSGA-II}
Multilevel analyses of neighbourhood socioeconomic context and health outcomes: a critical review
Intraclass Correlations: Uses in Assessing Rater Reliability
Intrinsically motivated reinforcement learning
Face Recognition Based on Fitting a 3D Morphable Model
ATM and ATR Substrate Analysis Reveals Extensive Protein Networks Responsive to DNA Damage
Imputation-based analysis of association studies: candidate regions and quantitative traits
Localizing recent adaptive evolution in the human genome.
In Search of the Biological Significance of Modular Structures in Protein Networks
Linux as a Case Study: Its Extracted Software Architecture
Gene-specific control of inflammation by TLR-induced chromatin modifications
Incipient speciation by divergent adaptation and antagonistic epistasis in yeast
Target mRNAs are repressed as efficiently by microRNA-binding sites in the 5â€² UTR as in the 3â€² UTR
Data integration: the teenage years
Understanding UI Integration: A Survey of Problems, Technologies, and Opportunities
Photonic Crystal Fibres
Staying connected while on the move: Cell phone use and social connectedness
A Note on Platt's Probabilistic Outputs for Support Vector Machines
Triangulating a cognitive control network using diffusion-weighted magnetic resonance imaging (MRI) and functional MRI.
Multiobjective optimization in bioinformatics and computational biology.
Genetic Properties Influencing the Evolvability of Gene Expression
Computational methods for diffusion-influenced biochemical reactions
G protein coupled receptor structure and activation.
Genome Expression Pathway Analysis Tool--analysis and visualization of microarray gene expression data under genomic, proteomic and metabolic context.
Semantic Networks
FolksOntology: An Integrated Approach for Turning Folksonomies into Ontologies
The Crowd: A Study of the Popular Mind
Anarchy, state, and utopia
Probabilistic reasoning by neurons
Genome-Wide Mapping of in Vivo Protein-DNA Interactions
Case handling: A new paradigm for business process support
Cool URIs for the Semantic Web
Lessons from applying the systematic literature review process within the software engineering domain
A Scalable Data Platform for a Large Number of Small Applications
Understanding Network Concepts in Modules
Introduction to Applied Mathematics
Keypoint Recognition Using Randomized Trees
Handbook of Creativity
Preemptive information extraction using unrestricted relation discovery
Recent Advances in Chemoinformatics
The Neural Basis of Inhibition in Cognitive Control
Unsupervised Named-Entity Recognition: Generating Gazetteers and Resolving Ambiguity
Conservation, regulation, synteny, and introns in a large-scale C. briggsae-C. elegans genomic alignment.
A molecular evolutionary framework for the phylum Nematoda
Large-scale analysis of transcriptional cis-regulatory modules reveals both common features and distinct subclasses
Evolutionary Computation: An Overview
Web mashup scripting language
BioText Search Engine: beyond abstract search
Principles of Genome Evolution in the Drosophila melanogaster Species Group
OMA BrowserÃ¢Â€Â”Exploring orthologous relations across 352 complete genomes
LinkHub: a Semantic Web system that facilitates cross-database queries and information retrieval in proteomics.
Container-based Operating System Virtualization: A Scalable, High-performance Alternative to Hypervisors
Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls
A microRNA component of the p53 tumour suppressor network
In vitro reprogramming of fibroblasts into a pluripotent ES-cell-like state
Archives, Memory, and Interfaces with the Past
Non-equilibrium critical phenomena and phase transitions into absorbing states
A Method to Convert Thesauri to SKOS
Dentate Gyrus NMDA Receptors Mediate Rapid Pattern Separation in the Hippocampal Network
RIO: analyzing proteomes by automated phylogenomics using resampled inference of orthologs.
Improved benchmarks for computational motif discovery
Predicting survival from microarray dataÃ¢Â€Â”a comparative study
e-Learning: The student experience
A synopsis of land use, land-use change and forestry (LULUCF) under the Kyoto Protocol and Marrakech Accords
Flux Balance Analysis of Mycolic Acid Pathway: Targets for Anti-Tubercular Drugs
Web 2.0 for Content for Learning and Teaching in Higher Education
A collaborative informatics infrastructure for multi-scale science
The neural representation of time.
Microfluidic large-scale integration: the evolution of design rules for biological automation.
Evolutionary rates vary among rRNA structural elements
The paradoxical success of aspect-oriented programming
Optimization of specificity in a cellular protein interaction network by negative selection.
Tracking the Red Queen: Measurements of Adaptive Progress in Co-Evolutionary Simulations
The Triple Helix: Gene, Organism and Environment
A Cooperative Coevolutionary Approach to Function Optimization
Climate-Carbon Cycle Feedback Analysis: Results from the C4MIP Model Intercomparison
Automated reverse engineering of nonlinear dynamical systems
Brain states: top-down influences in sensory processing.
Trends, Rhythms, and Aberrations in Global Climate 65 Ma to Present
Numerical Recipes 3rd Edition: The Art of Scientific Computing
Application of the Multimolecule and Multiconformational RESP Methodology to Biopolymers: Charge Derivation for DNA, RNA, and Proteins
Power-law distributions in empirical data
The human phylome
Adaptation Reduces Spike-Count Reliability, But Not Spike-Timing Precision, of Auditory Nerve Responses
Miniature eye movements enhance fine spatial detail.
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
Characterization of microRNA expression profiles in normal human tissues
The landscape of histone modifications across 1% of the human genome in five human cell lines
Integrated analysis of experimental data sets reveals many novel promoters in 1% of the human genome.
Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions.
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
High-Resolution Profiling of Histone Methylations in the Human Genome
Genomix: a method for combining gene-finders' predictions, which uses evolutionary conservation of sequence and intron exon structure
Computational prediction of protein-protein interactions.
Boundary Negotiating Artifacts: Unbinding the Routine of Boundary Objects and Embracing Chaos in Collaborative Work
A Task-Based Ontology Approach to Automate Geospatial Data Retrieval
Locating proteins in the cell using TargetP, SignalP and related tools.
Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions
Combating Spam in Tagging Systems
Emerging principles of regulatory evolution
The Folksonomy Tag Cloud: When is it Useful?
Celsius: a community resource for Affymetrix microarray data
Modulation of neuronal interactions through neuronal synchronization.
Neural Mechanisms of Visual Attention: How Top-Down Feedback Highlights Relevant Locations
Femtosecond diffractive imaging with a soft-X-ray free-electron laser
Large- SCale Sequencing of Meiosis associated Genes from a CDNA Library of Lily Microsporocytes
Mapping of transcription factor binding regions in mammalian cells by ChIP: Comparison of array- and sequencing-based technologies
What is a gene, post-ENCODE? History and updated definition.
Utilization of the PICO framework to improve searching PubMed for clinical questions.
CpG Island Mapping by Epigenome Prediction
Noise in gene expression determines cell fate in Bacillus subtilis.
Calculating scattering amplitudes efficiently
RNA regulons: coordination of post-transcriptional events
Service oriented architectures: approaches, technologies and research issues
Model management 2.0: manipulating richer mappings
23 Problems in Systems Neuroscience (Computational Neuroscience Series)
Dynamical Systems in Neuroscience: The Geometry of Excitability and Bursting (Computational Neuroscience)
Power provisioning for a warehouse-sized computer
Very Simple Classification Rules Perform Well on Most Commonly Used Datasets
Detection of DNA structural motifs in functional genomic elements.
Collaboration in Software Engineering: A Roadmap
Extracting biology from high-dimensional biological data.
Fundamental Components of Attention
The Java Memory Model
Analysis of dynamic brain oscillations: methodological advances.
Evolution of Symbiotic Bacteria in the Distal Human Intestine
E Pluribus Unum: Diversity and Community in the Twenty-first Century The 2006 Johan Skytte Prize Lecture
Fast-evolving noncoding sequences in the human genome.
Seahawk: moving beyond HTML in Web-based bioinformatics analysis
Handbook of stochastic methods : for physics, chemistry and the natural sciences
Defining N-ary Relations on the Semantic Web
Automating Creation of Hierarchical Faceted Metadata Structures
Structure and form of folksonomy tags: The road to the public library catalogue
@toread and Cool: Tagging for Time, Task and Emotion
Taking the information to the public through Library 2.0
Network coding: an instant primer
Chromatin dynamics and the preservation of genetic information
Peer-to-peer support for massively multiplayer games
Origin of phenotypes: Genes and transcripts
Snakes, Shapes, and Gradient Vector Flow
Addition of milk prevents vascular protective effects of tea
More genes underwent positive selection in chimpanzee evolution than in human evolution
How to Lie With Statistics
Genomic analysis of the hierarchical structure of regulatory networks
Network-Based Analysis of Affected Biological Processes in Type 2 Diabetes Models
The protein folding problem: when will it be solved?
Hebbian STDP in mushroom bodies facilitates the synchronous flow of olfactory information in locusts
Compressed full-text indexes
Local detection of electromagnetic energy transport below the diffraction limit in metal nanoparticle plasmon waveguides
In Search of Coherence: A Review of E-Mail Research
Introduction to protein folding for physicists
A framework for analyzing and understanding online communities
The Interpretation of Cultures
Pathologies of Rational Choice Theory: A Critique of Applications in Political Science
Extracting Policy Positions from Political Texts Using Words as Data
A new multipoint method for genome-wide association studies by imputation of genotypes.
The MARTINI Force Field:â€‰ Coarse Grained Model for Biomolecular Simulations
Statistical shape influence in geodesic active contours
Email overload at work: an analysis of factors associated with email strain
Mechanisms of specificity in protein phosphorylation
The information-seeking behaviour of doctors: a review of the evidence.
Self-taught Learning: Transfer Learning from Unlabeled Data
Characterizing the unfolded states of proteins using single-molecule FRET spectroscopy and molecular simulations
Flux balance analysis in the era of metabolomics.
Interaction-site prediction for protein complexes: a critical assessment.
Can social bookmarking enhance search in the web?
Model storage, exchange and integration.
Library 2.0: A Guide to Participatory Library Service
Intronic microRNA precursors that bypass Drosha processing.
Mock roles, not objects
Information Re-Retrieval: Repeat Queries in Yahoo's Logs
GenMAPP 2: new features and resources for pathway analysis
Normalization and experimental design for ChIP-chip data
Theory of the firm: Managerial behavior, agency costs and ownership structure
Knowledge convergence in collaborative learning: Concepts and assessment
Collaborative information retrieval: Toward a social informatics view of IR interaction
CODATA recommended values of the fundamental physical constants: 1998
{Discrete hierarchical organization of social group sizes}
{Autonomic Computing: An Overview}
Speech Perception
Cross-frequency coupling between neuronal oscillations
Bmp4 and Morphological Variation of Beaks in Darwin's Finches
Web 2.0 [web technologies]
Ringo - an R/Bioconductor package for analyzing ChIP-chip readouts
Indexing dataspaces
Linguistic tone is related to the population frequency of the adaptive haplogroups of two brain size genes, ASPM and Microcephalin
Principles of dataspace systems
Measurement of Conditional Phase Shifts for Quantum Logic
Cognitive apprenticeship: Teaching the crafts of reading, writing, and mathematics
Mobile probes.
Semantic Web Service provision: a realistic framework for Bioinformatics programmers.
Limma: linear models for microarray data.
A framework and ontology for dynamic Web services selection
Towards an ontology of generic engineering design activities
Speaker Verification Using Adapted Gaussian Mixture Models
Trawler: de novo regulatory motif discovery pipeline for chromatin immunoprecipitation
Guilt beyond a reasonable doubt
A measure of centrality based on network efficiency
Analysis of a large-scale weighted network of one-to-one human communication
Folksonomies: Why do we need controlled vocabulary?
Via Freedom to Coercion: The Emergence of Costly Punishment
Comparison of Topological, Shape, and Docking Methods in Virtual Screening
A Mammalian microRNA Expression Atlas Based on Small RNA Library Sequencing
The Near Eastern Origin of Cat Domestication
Determinants of Coordination Modes within Organizations
The Management of Innovation
Adaptive control of virtualized resources in utility computing environments
Integrating compression and execution in column-oriented database systems
Genome transplantation in bacteria: changing one species to another.
A genomic pathway approach to a complex disease: axon guidance and Parkinson disease.
Protein folding: Then and now.
The state of peer-to-peer simulators and simulations
Developing search strategies for clinical practice guidelines in SUMSearch and Google Scholar and assessing their retrieval performance
A model of Internet topology using k-shell decomposition
PAML 4: Phylogenetic Analysis by Maximum Likelihood
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
Structure-based activity prediction for an enzyme of unknown function
Beyond the sequence: cellular organization of genome function.
Privacy-preserving data mining
The Mirtron Pathway Generates microRNA-Class Regulatory RNAs in Drosophila
The Neural Basis of Decision Making
Social Software. schnell + kompakt (Entwickler-Press)
Why isn't every physicist a Bayesian?
Sparse MRI: The application of compressed sensing for rapid MR imaging
Network and intrinsic cellular mechanisms underlying theta phase precession of hippocampal neurons
Systematic Discovery of In Vivo Phosphorylation Networks
Microbial genome data resources
Distinct class of putative Ã¢Â€Âœnon-conservedÃ¢Â€Â promoters in humans: Comparative studies of alternative promoters of human and mouse genes
When choice is demotivating: can one desire too much of a good thing?
A theory of power-law distributions in financial market fluctuations
Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs.
Can payments for avoided deforestation to tackle climate change also benefit the poor?
Making voluntary carbon markets work better for the poor: the case of forestry offsets
Evolution and Development of Inflorescence Architectures
Biographies, Bollywood, Boom-boxes and Blenders: Domain Adaptation for Sentiment Classification
Weakly Supervised Learning for Hedge Classification in Scientific Literature
A Graph-Based Approach to Named Entity Categorization in Wikipedia Using Conditional Random Fields
Ontology Learning and Population from Text: Algorithms, Evaluation and Applications
The situated function-behaviour-structure framework
STL: A Seasonal-Trend Decomposition Procedure Based on Loess
Oncomine 3.0: genes, pathways, and networks in a collection of 18,000 cancer gene expression profiles.
The New Metrics of Scholarly Authority
Probing genetic overlap among complex human phenotypes.
Ã¢Â€Â˜Blogs of warÃ¢Â€Â™
Can Internet Video-on-Demand be Profitable?
Bootstrap confidence intervals: when, which, what? {A} practical guide for medical statisticians
Dipole Blockade and Quantum Information Processing in Mesoscopic Atomic Ensembles
Detecting genetic variation in microarray expression data
A practical ontology for the large-scale modeling of scholarly artifacts and their usage
World explorer: visualizing aggregate data from unstructured text in geo-referenced collections
Cilk: An Efficient Multithreaded Runtime System
Spontaneous Activity Associated with Primary Visual Cortex: A Resting-State fMRI Study.
Unrest at rest: Default activity and spontaneous network correlations
Improving gene set analysis of microarray data by SAM-GS
MicroRNA Targeting Specificity in Mammals: Determinants beyond Seed Pairing
Overview of Generative Software Development
High-speed imaging reveals neurophysiological links to behavior in an animal model of depression.
Coarse Grained Model for Semiquantitative Lipid Simulations
A Min-Max Relation on Packing Feedback Vertex Sets
FlyMine: an integrated database for Drosophila and Anopheles genomics
Exploiting Wikipedia as External Knowledge for Named Entity Recognition
Large-Scale Named Entity Disambiguation Based on Wikipedia Data
Comparison of C. elegans and C. briggsae Genome Sequences Reveals Extensive Conservation of Chromosome Organization and Synteny
Elements of basic category theory
Machine Learning and Its Applications to Biology
{Association study designs for complex diseases}
Identifying Sources of Opinions with Conditional Random Fields and Extraction Patterns
SentiWordNet: A Publicly Available Lexical Resource for Opinion Mining
Determining the semantic orientation of terms through gloss classification
Mining Opinion Features in Customer Reviews
Sentiment Analysis: Capturing Favorability using Natural Language Processing
The Measurement of Meaning
Seeing stars: Exploiting class relationships for sentiment categorization with respect to rating scales
Creating Subjective and Objective Sentence Classifiers from Unannotated Texts
Learning Subjective Language
Sentiment Analyzer: Extracting Sentiments about a Given Topic using Natural Language Processing Techniques
Towards Answering Opinion Questions: {S}eparating Facts from Opinions and Identifying the Polarity of Opinion Sentences
Metagene projection for cross-platform, cross-species characterization of global transcriptional states
Anton, a special-purpose machine for molecular dynamics simulation
Learning, Mutation, and Long Run Equilibria in Games
Structures in systems biology.
A universal RNAi-based logic evaluator that operates in mammalian cells
A content-collaborative recommender that exploits WordNet-based user profiles for neighborhood formation
Dr. Mashup; or, why educators should learn to stop worrying and love the remix
Searching for genetic determinants in the new millennium.
Feedback-directed random test generation
AUC optimization vs. error rate minimization
Causality detection based on information-theoretic approaches in time series analysis
Genomic maps and comparative analysis of histone modifications in human and mouse
Mutation rates in mammalian genomes
Functional evolution of a cis-regulatory module.
FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments.
A Mathematical Introduction to Robotic Manipulation
Human disease classification in the postgenomic era: a complex systems approach to human pathobiology.
Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli.
Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic Organization
Looking for Darwin in all the wrong places: the misguided quest for positive selection at the nucleotide sequence level
What Have Innsbruck and Leipzig in Common? Extracting Semantics from Wiki Content
Biodiversity and ecosystem multifunctionality
Modularity and community detection in bipartite networks
A Five-Year Study of File-System Metadata
A new approach for using genome scans to detect recent positive selection in the human genome.
Dihedral angle principal component analysis of molecular dynamics simulations
Point process models of single-neuron discharges
Quantification of mRNA using real-time RT-PCR.
Advantage of support vector machine for neural spike train decoding under spike sorting errors
A robust method for spike sorting with automatic overlap decomposition
A Chromatin Landmark and Transcription Initiation at Most Promoters in Human Cells
Distributed Knowledge Representation on the Social Semantic Desktop: Named Graphs, Views and Roles in NRL
A taxonomy of suffix array construction algorithms
Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing
A First-Principles Model of Early Evolution: Emergence of Gene Families, Species, and Preferred Protein Folds
Colloidal Glass Transition Observed in Confinement
Labs of the World, Unite!!!
Housekeeping genes tend to show reduced upstream sequence conservation
Articulated Body Motion Capture by Annealed Particle Filtering
Combined experimental and computational approaches to study the regulatory elements in eukaryotic genes
Systems Biology in Practice: Concepts, Implementation and Application
Mining gene expression profiles: expression signatures as cancer phenotypes
Non-Abelian anyons and topological quantum computation
Topics over time: a non-Markov continuous-time model of topical trends
Biowep: a workflow enactment portal for bioinformatics applications.
Options, Futures, and Other Derivatives
Morphological evolution through multiple cis-regulatory mutations at a single gene
Probing the Limits to Positional Information
Global and local architecture of the mammalian microRNA-transcription factor regulatory network.
He says, she says: conflict and coordination in Wikipedia
Label-Free, Single-Molecule Detection with Optical Microcavities
Strategic alignment: leveraging information technology for transforming organizations
Protein interactions and disease: computational approaches to uncover the etiology of diseases
Copy number variants and genetic traits: closer to the resolution of phenotypic to genotypic variability
Absorption and Scattering of Light by Small Particles
{Nanoelectromechanical Systems}
Expression evolution in yeast genes of single-input modules is mainly due to changes in trans-acting factors.
CARGO: a web portal to integrate customized biological information.
Molecular basis for target RNA recognition and cleavage by human RISC.
Evolutionary history of mammalian transposons determined by genome-wide defragmentation.
The effect of ancient population bottlenecks on human phenotypic variation
Conformational entropy in molecular recognition by proteins
Mutation rate variation in multicellular eukaryotes: causes and consequences.
The distribution of fitness effects of new mutations
Principled Hybrids of Generative and Discriminative Models
A Multi-Level Algorithm For Partitioning Graphs
Dynamics of Bose-Einstein condensates in optical lattices
Distributed Systems: Principles and Paradigms (2nd Edition)
GEOquery: a bridge between the Gene Expression Omnibus (GEO) and BioConductor
Checkers Is Solved
Soft peer review? Social software and distributed scientific evaluation
Privacy and contextual integrity: framework and applications
piRNAsÃ¢Â€Â”the ancient hunters of genome invaders
Collaborative Plans for Complex Group Action
Widely distributed noncoding purifying selection in the human genome
Accuracy and quality of massively parallel DNA pyrosequencing.
Host immune system gene targeting by a viral miRNA.
Simics: A full system simulation platform
A practical guide to stochastic simulations of reaction-diffusion processes
Common Sequence Polymorphisms Shaping Genetic Diversity in Arabidopsis thaliana
Feature-Based Attentional Modulations in the Absence of Direct Visual Stimulation.
Phylogenetic Reconstruction of Orthology, Paralogy, and Conserved Synteny for Dog and Human
Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome.
Potluck: Data Mash-Up Tool for Casual Users
Stability and Diversity of Ecosystems
Permutation, Parametric, and Bootstrap Tests of Hypotheses (Springer Series in Statistics)
Evolutionary Dynamics: Exploring the Equations of Life
FROM FACTORS TO ACTORS: Computational Sociology and Agent-Based Modeling
Target mimicry provides a new mechanism for regulation of microRNA activity
Development of an instrument to measure the perceptions of adopting an information technology innovation
Proteinâ€“Protein Interaction Hotspots Carved into Sequences
Detection of human influence on twentieth-century precipitation trends
Adaptive evolution of conserved non-coding elements in mammals
The Impact of Research Collaboration on Scientific Productivity
Image Dissection in Natural Scientific Inquiry
Out of the Laboratory and Down to the Bay: Writing in Science and Technology Studies
Purifying Selection Maintains Highly Conserved Noncoding Sequences in Drosophila
Scattering and Interference in Epitaxial Graphene
Heritability and Tissue Specificity of Expression Quantitative Trait Loci
A stability based method for discovering structure in clustered data
Statistical tests for differential expression in cDNA microarray experiments
Variance stabilization applied to microarray data calibration and to the quantification of differential expression
An exploratory study of Google Scholar
Validity of the single processor approach to achieving large scale computing capabilities
Rubidium D Line Data
{Observation of Bose-Einstein Condensation in a Dilute Atomic Vapor}
Bose-Einstein condensation in a gas of sodium atoms
Trapping of neutral sodium atoms with radiation pressure
Bose-Einstein condensation in the alkali gases: Some fundamental concepts
The evolution of social behavior in microorganisms
Adaptive Functional Programming
Human based genetic algorithm
Evolving morphologies of simulated 3d organisms based on differential gene expression
Computational Genetics, Physiology, Metabolism, Neural Systems, Learning, Vision, and Behavior or PolyWorld: Life in a New Context
Bridging the gap in RNA structure prediction
Attosecond science
Automatic genome-wide reconstruction of phylogenetic gene trees
Information Foraging Theory: Adaptive Interaction with Information (Oxford Series in Human-Technology Interaction)
Understanding the Characteristics of Internet Short Video Sharing: YouTube as a Case Study
Comparative analysis of microarray normalization procedures: effects on reverse engineering gene networks
Confocal microscopy of colloids
AliBaba: PubMed as a graph.
The spread of obesity in a large social network over 32 years.
Single-Atom Single-Photon Quantum Interface
"The Benefits of Facebook ""Friends:"" Social Capital and College Students' Use of Online Social Network Sites"
The Scientific Research Potential of Virtual Worlds
Evolution of chromosome organization driven by selection for reduced gene expression noise.
Computational systems biology in drug discovery and development: methods and applications
Moving toward a system genetics view of disease.
A Tunable Genetic Switch Based on RNAi and Repressor Proteins for Regulating Gene Expression in Mammalian Cells
Argonaute Proteins: Mediators of RNA Silencing
E-tivities: The Key to Active Online Learning
MicroRNA regulation of human proteinâ€“protein interaction network
Clustering short texts using wikipedia
Towards automatic extraction of event and place semantics from flickr tags
A new paradigm for developmental biology
Stochastic simulation of chemical kinetics.
The Cornerstones of Competitive Advantage: A Resource-Based View
The utility of MAS5 expression summary and detection call algorithms
Systemic lupus erythematosus.
caCORE version 3: Implementation of a model driven, service-oriented architecture for semantic interoperability
Automated de novo prediction of native-like RNA tertiary structures
A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information.
Structure and randomness in combinatorics
Climate Change Effects on Plant Disease: Genomes to Ecosystems
Niche Construction, Biological Evolution and Cultural Change.
Individual-based Modeling and Ecology
Modeling plant growth and development
A Taxonomy for Artificial Embryogeny
A synthetic gene network for tuning protein degradation in Saccharomyces cerevisiae
Temporal patterns of genes in scientific publications
â€œIt is what one doesâ€: why people participate and help others in electronic communities of practice
The gamma cycle
Robust optimization - A comprehensive survey
Swoosh: A Generic Approach to Entity Resolution
Development of the Human Infant Intestinal Microbiota
Energetics of Protein Folding
Heritability of alternative splicing in the human genome.
Low-cost multi-touch sensing through frustrated total internal reflection
Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789
Social Software. Formen der Kooperation in computerbasierten Netzwerken
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0
Domain Adaptation with Structural Correspondence Learning
From Tree House to Barracks: The Social Life of Guilds in World of Warcraft
The protein network of bacterial motility
Gene copy number variation spanning 60 million years of human and primate evolution.
A Proposed Standard for the Scholarly Citation of Quantitative Data
Inference of Bacterial Microevolution Using Multilocus Sequence Data
The Three Paradigms of HCI
Extreme programming: a survey of empirical data from a controlled case study
The Category Theoretic Understanding of Universal Algebra: Lawvere Theories and Monads
The MicroRNA miR-124 promotes neuronal differentiation by triggering brain-specific alternative pre-mRNA splicing.
Conceptos de web 2.0 y biblioteca 2.0: origen, definiciones y retos para las bibliotecas actuales
Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data
Learning Visual Similarity Measures for Comparing Never Seen Objects
Tagging video: conventions and strategies of the YouTube community
Why We Twitter: Understanding Microblogging Usage and Communities
OReFiL: an online resource finder for life sciences.
Progress in computational protein design.
Bounded model checking
Computation of significance scores of unweighted Gene Set Enrichment Analyses.
From correlation to causation networks: a simple approximate learning algorithm and its application to high-dimensional plant gene expression data
Predicting Absolute Ligand Binding Free Energies to a Simple Model Site
ParEGO: a hybrid algorithm with on-line landscape approximation for expensive multiobjective optimization problems
Social Software im Unternehmen. Wikis und Weblogs fÃ¼r Wissensmanagement und Kommunikation
Source Code Analysis: A Road Map
GSEA-P: a desktop application for Gene Set Enrichment Analysis.
Alzforum and SWAN: the present and future of scientific web communities
Mediawiki Administrators' Tutorial Guide: Install, Manage, and Customize Your Mediawiki Installation
The influence of caption features on clickthrough patterns in web search
Studying the use of popular destinations to enhance web search interaction
Random walks on the click graph
eTBLAST: a web server to identify expert reviewers, appropriate journals and similar publications.
Whole-genome sequencing and assembly with high-throughput, short-read technologies.
Bioinformatics software for biologists in the genomics era.
OBO to OWL: a protege OWL tab to read/save OBO ontologies.
Precise selection techniques for multi-touch screens
Direct-touch vs. mouse input for tabletop displays
In vivo dynamics of RNA polymerase II transcription.
DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA
Human gene organization driven by the coordination of replication and transcription
Understanding Web 2.0
Three methods for optimization of cross-laboratory and cross-platform microarray expression data
Knowledge and its Limits
The minimum information required for reporting a molecular interaction experiment (MIMIx)
The minimum information about a proteomics experiment (MIAPE)
How does eukaryotic gene prediction work?
Characterization of Protein Hubs by Inferring Interacting Motifs from Protein Interactions
Rethinking the design of the Internet: the end-to-end arguments vs. the brave new world
Scene Completion Using Millions of Photographs
The Spec# Programming System: An Overview
Standards of Medical Care in Diabetesâ€”2007
Discovering interesting usage patterns in text collections: Integrating text mining with visualization
Subspace: secure cross-domain communication for web mashups
Improving life sciences information retrieval using semantic web technology.
Divergence of Transcription Factor Binding Sites Across Related Yeast Species
Lesioning an attractor network: investigations of acquired dyslexia.
Topics in semantic representation.
A reference ontology for biomedical informatics: the Foundational Model of Anatomy.
Movement, Activity and Action: the Role of Knowledge in the Perception of Motion
Object retrieval with large vocabularies and fast spatial matching
Reconsidering Political and Popular Understandings of the Digital Divide
Gradations in digital inclusion: children, young people and the digital divide
Beautiful Code: Leading Programmers Explain How They Think (Theory in Practice (O'Reilly))
Innovation and robustness in complex regulatory gene networks
Raising the estimate of functional human sequences.
The effect of Web 2.0 on the future of medical practice and education: Darwikinian evolution or folksonomic revolution?
The Cell Phone. An Anthropology of Communication.
THE EFFECTS OF PSYCHOLOGICAL STRESS ON HUMANS: INCREASED PRODUCTION OF PRO-INFLAMMATORY CYTOKINES AND Th1-LIKE RESPONSE IN STRESS-INDUCED ANXIETY
Praxisbuch Web 2.0
Beyond formal learning: Informal community elearning
Quantitative mass spectrometry in proteomics: a critical review
Web Services at the European Bioinformatics Institute
Beyond Google: How do students conduct academic research?
Inheritance and loss? A brief survey of Google Books
Learning the value of information in an uncertain world
Distinguishing Causal Interactions in Neural Populations
Let's go to the whiteboard: how and why software developers use drawings
Adaptive Mutations in Bacteria: High Rate and Small Effects
Multi-label informed latent semantic indexing
Clustering Microarray-Derived Gene Lists through Implicit Literature Relationships.
The Structure and Value of Modularity in Software Design
Network structure of cerebral cortex shapes functional connectivity on multiple time scales
Reassembling the Social. An introduction to actor-network-theory
Varying environments can speed up evolution
Correlation between neural spike trains increases with firing rate
The Sources of Variability in Saccadic Eye Movements
Universally Sloppy Parameter Sensitivities in Systems Biology Models
File-access characteristics of parallel scientific workloads
Selection and evolution of enzymes from a partially randomized non-catalytic scaffold
Mammalian synthetic biology: Engineering of sophisticated gene networks
Rapid Erasure of Long-Term Memory Associations in the Cortex by an Inhibitor of PKM{zeta}
Time Scheduling of Transit Systems With Transfer Considerations Using Genetic Algorithms
Plant Speciation
Social Software in Libraries: Building Collaboration, Communication, and Community Online
miRNomicsâ€”The bioinformatics of microRNA genes
Decoding human brain activity during real-world experiences
A Framework For Community Identification in Dynamic Social Networks
Challenges in Mining Social Network Data: Processes, Privacy, and Paradoxes
User Participation in Social Media: Digg Study
Identification and Characterization of Cell Typeâ€“Specific and Ubiquitous Chromatin Regulatory Structures in the Human Genome
Mechanistic approaches to the study of evolution: the functional synthesis
Integrating physical and genetic maps: from genomes to interaction networks
Persuasive Games: The Expressive Power of Videogames
AffyProbeMiner: a web resource for computing or retrieving accurately redefined Affymetrix probe sets
e-Science and biological pathway semantics
Eu.Gene Analyzer a tool for integrating gene expression data with pathway databases.
A Whole-Genome Association Study of Major Determinants for Host Control of HIV-1
Crystal Structure of an Ancient Protein: Evolution by Conformational Epistasis
Multicolor super-resolution imaging with photo-switchable fluorescent probes.
Phenotype ontologies: the bridge between genomics and evolution.
Understanding the information needs of public health practitioners: a literature review to inform design of an interactive digital knowledge management system.
Designing the undesignable: Social software and control
Hierarchical clustering schemes
Level Set Methods and Fast Marching Methods: Evolving Interfaces in Computational Geometry, Fluid Mechanics, Computer Vision, and Materials Science (Cambridge ... on Applied and Computational Mathematics)
MicroRNA sponges: competitive inhibitors of small RNAs in mammalian cells
Human Genome Ultraconserved Elements Are Ultraselected
Spontaneous fluctuations in brain activity observed with functional magnetic resonance imaging.
Epitomic analysis of appearance and shape
The Biological Big Bang model for the major transitions in evolution
PyCogent: a toolkit for making sense from sequence
Principles and Practice of Structural Equation Modeling
Global Software Engineering: The Future of Socio-technical Coordination
Filtering genes to improve sensitivity in oligonucleotide microarray data analysis.
Extracting semantic relations from query logs
An algorithm to find overlapping community structure in networks
How gene order is influenced by the biophysics of transcription regulation
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes
Predicting disease genes using protein-protein interactions.
PubMed vs. HighWire Press: a head-to-head comparison of two medical literature search engines.
{XSL} Transformations {(XSLT)} Version 1.0
Tutorial on Agent-Based Modeling and Simulation
Blogging Practices: An Analytical Framework
Plans and Resource-Bounded Practical Reasoning
Emergence of communities in weighted networks
Portals, blogs and co.: the role of the Internet as a medium of science communication.
{Ten iterative steps in development and evaluation of environmental models}
How stem cells age and why this makes us grow old
Characterization of Protein Conformational States by Normal-Mode Frequencies
Probabilistic interpretation of population codes.
Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing.
Design of multi-specificity in protein interfaces.
Social cognitive theory: An agentic perspective
Evolutionary Explanations for Cooperation
A modular and extensible RNA-based gene-regulatory platform for engineering cellular function
GPS-less low-cost outdoor localization for very small devices
Quantitative Characteristics of Gene Regulation by Small RNA.
Universal coalgebra: a theory of systems
Physical limits of inference
Rhetoric in Popular Culture
Attosecond physics
Conventional Wisdom on Measurement: A Structural Equation Perspective
A survey on automatic test data generation
To do or not to do: the neural signature of self-control.
Random-Walk Computation of Similarities between Nodes of a Graph with Application to Collaborative Recommendation
Capturing Heterogeneity in Gene Expression Studies by &#34;Surrogate Variable Analysis&#34;
A Long-Term Evolutionary Pressure on the Amount of Noncoding DNA
Tools for visually exploring biological networks.
Mechanical processes in biochemistry.
A review of feature selection techniques in bioinformatics.
A comparison of background correction methods for two-colour microarrays.
The Phusion Assembler
SSAHA: a fast search method for large DNA databases.
PCAP: A whole-genome assembly program
New directions in single-molecule imaging and analysis
Being accurate is not enough: how accuracy metrics have hurt recommender systems
Understanding Molecular Simulation, Second Edition: From Algorithms to Applications (Computational Science Series, Vol 1)
Promoter regions of many neural- and nutrition-related genes have experienced positive selection during human evolution
Rydberg atoms
Introduction to Statistical Pattern Recognition, Second Edition (Computer Science and Scientific Computing Series)
Mind the Gaps: Evidence of Bias in Estimates of Multiple Sequence Alignments.
Annotating noncoding RNA genes.
Mobility promotes and jeopardizes biodiversity in rockâ€“paperâ€“scissors games
Widespread lateral gene transfer from intracellular bacteria to multicellular eukaryotes.
A multivariate analysis approach to the integration of proteomic and gene expression data
Localization of a Stable Neural Correlate of Associative Memory
Programming Collective Intelligence: Building Smart Web 2.0 Applications
Similarity Measurement in Context
Incremental Evolution of Complex General Behavior
Convergent Evolution of Enzyme Active Sites Is not a Rare Phenomenon
Seam carving for content-aware image resizing
Formation of monolayer films by the spontaneous assembly of organic thiols from solution onto gold
Programming Erlang: Software for a Concurrent World
A MicroRNA Feedback Circuit in Midbrain Dopamine Neurons.
Automated protein subfamily identification and classification.
The Current State and Future of Search Based Software Engineering
Data Integration with Uncertainty
Semantic Integration Research in the Database Community: A Brief Survey
PolyLens: a recommender system for groups of users
{Minimization of Boolean complexity in human concept learning}
Current progress in network research: toward reference networks for key model organisms
Interpreting Neuronal Population Activity by Reconstruction: Unified Framework With Application to Hippocampal Place Cells
The diploid genome sequence of an individual human.
Scholarly research and information practices: a domain analytic approach
Domain-wide regulation of gene expression in the human genome
Green fluorescent protein as a marker for gene expression.
New models of collaboration in genome-wide association studies: the Genetic Association Information Network
Is Proteomics the New Genomics?
A systems biology approach for pathway level analysis
Alternative activation of macrophages.
Mining biological networks for unknown pathways.
Heritable Stochastic Switching Revealed by Single-Cell Genealogy
Deletion of Ultraconserved Elements Yields Viable Mice
Transposable element fragments in protein-coding regions and their contributions to human functional proteins
Development and validation of brief measures of positive and negative affect: The PANAS Scales
"The ""what"" and ""why"" of goal pursuits: Human needs and the self-determination of behavior"
Reconceptualizing Organizational Routines as a Source of Flexibility and Change
The Life and Death of Online Gaming Communities: A Look at Guilds in World of Warcraft
Navigability of Complex Networks
Model-driven Development of Complex Software: A Research Roadmap
Temporal precision in the neural code and the timescales of natural vision
Natural history and evolutionary principles of gene duplication in fungi.
The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists.
Automatic labeling of multinomial topic models
KAAS: an automatic genome annotation and pathway reconstruction server.
Some Unintended Consequences of Information Technology in Health Care: The Nature of Patient Care Information System-related Errors
Ultraconserved Regions Encoding ncRNAs Are Altered in Human Leukemias and Carcinomas.
Chemogenomic approaches to rational drug design.
Cortico-striatal circuits and interval timing: coincidence detection of oscillatory processes
Methods and strategies for analyzing copy number variation using DNA microarrays
Challenges and standards in integrating surveys of structural variation
Copy-number variation and association studies of human disease.
Mutational and selective effects on copy-number variants in the human genome
Social Components of Fitness in Primate Groups
Strategies for Theorizing from Process Data
{Evolution in the Social Brain}
Orthologous transcription factors in bacteria have different functions and regulate different genes.
The Perception of Rational, Goal-Directed Action in Nonhuman Primates
Tabletop sharing of digital photographs for the elderly
Humans Have Evolved Specialized Skills of Social Cognition: The Cultural Intelligence Hypothesis
A Metagenomic Survey of Microbes in Honey Bee Colony Collapse Disorder
The population genetics of structural variation
Restricted Boltzmann machines for collaborative filtering
How Quickly Do Systematic Reviews Go Out of Date? A Survival Analysis
In vivo measurement of cortical impedance spectrum in monkeys: implications for signal propagation.
How to Write a Lot: A Practical Guide to Productive Academic Writing
Quantifying the isolation quality of extracellularly recorded action potentials.
Multiresolution Gray-Scale and Rotation Invariant Texture Classification with Local Binary Patterns
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences.
Noise in Integrate-and-Fire Neurons: From Stochastic Input to Escape Rates
Discovering Functional Communities in Dynamical Networks
How to decide which are the most pertinent overly-represented features during gene set enrichment analysis
Coverage and error models of protein-protein interaction data by directed graph analysis
Context-sensitive data integration and prediction of biological networks
Real-time simultaneous localisation and mapping with a single camera
Imaging in Systems Biology
The ECAR Study of Undergraduate Students and Information Technology, 2007 - Key Findings
The electronic properties of graphene
Integrating sequence and structural biology with DAS.
{{A} genome-wide analysis of {C}p{G} dinucleotides in the human genome distinguishes two distinct classes of promoters}
The experience of emotion.
Sociomaterial Practices: Exploring Technology at Work
Relevance Feedback for Best Match Term Weighting Algorithms in Information Retrieval
Structure and interactions of biological helices
Exploring the functional landscape of gene expression: directed search of large microarray compendia.
Supersymmetric Gauge Theories and the AdS/CFT Correspondence
A Secular Age
"Research Commentary: Desperately Seeking the ""IT"" in IT Research--A Call to Theorizing the IT Artifact"
Unleashing Web 2.0: From Concepts to Creativity
Data parallel Haskell: a status report
OntologyWidget - a reusable, embeddable widget for easily locating ontology terms.
The Stuff of Thought: Language as a Window into Human Nature
Zippered Polygon Meshes from Range Images
Global Pattern Formation and Ethnic/Cultural Violence
A survey of named entity recognition and classification
Functional Architecture and Evolution of Transcriptional Elements That Drive Gene Coexpression
Complexity of Coupled Human and Natural Systems
Web 2.0: hype or happiness?
Enabling an accessible web 2.0
Active exploration for learning rankings from clickthrough data
Ensemble based systems in decision making
Emotion and sociable humanoid robots
Fluorescent protein FRET: the good, the bad and the ugly.
The Chemistry of Protein Catalysis
Quantitative assessment of protein function prediction from metagenomics shotgun sequences
AVID: A Global Alignment Program
HMMoC a compiler for hidden Markov models
A capacity theory of comprehension: individual differences in working memory.
When are recommender systems useful?
User Profiles for Personalized Information Access
User Models for Adaptive Hypermedia and Adaptive Educational Systems
How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules?
Collaborative Filtering Recommender Systems
Content-Based Recommendation Systems
Hybrid Web Recommender Systems
Semantic Web Technologies for the Adaptive Web
Software Component Models
Parallel Programming with MPI
Implementing deterministic declarative concurrency using sieves
Implementation of mixed precision in solving systems of linear equations on the Cell processor
Tag Recommendations in Folksonomies
Transactional Memory
Open MPI: A Flexible High Performance MPI
Design and Evaluation of Nemesis, a Scalable, Low-Latency, Message-Passing Communication Subsystem
The potential of the cell processor for scientific computing
The LINPACK Benchmark: past, present and future
Gene conversion: mechanisms, evolution and human disease
The evolution of genetic networks by non-adaptive processes
Ribozymes, riboswitches and beyond: regulation of gene expression without proteins
Splicing in disease: disruption of the splicing code and the decoding machinery
DNA sequencing: bench to bedside and beyond
Population genomics of human gene expression.
PolyScan: An automatic indel and SNP detection approach to the analysis of human resequencing data
Diet and the evolution of human amylase gene copy number variation
The fragment assembly string graph
Is Random Close Packing of Spheres Well Defined?
Crossing the Quality Chasm: A New Health System for the 21st Century
An HMM model for coiled-coil domains and a comparison with  PSSM-based predictions
Why should I share? Examining social capital and knowledge contribution in electronic networks of practice.
Real-Space Imaging of Nucleation and Growth in Colloidal Crystallization
A semantic web approach applied to integrative bioinformatics experimentation: a biological use case with genomics data
Classical Electrostatics in Biology and Chemistry
Software Abstractions: Logic, Language, and Analysis
Expectation modulates neural responses to pleasant and aversive stimuli in primate amygdala.
Restful Web Services
Mathematical Models of Social Evolution: A Guide for the Perplexed
Jamming at zero temperature and zero applied stress: The epitome of disorder
Moderated statistical tests for assessing differences in tag abundance.
Identity Theory and Social Identity Theory
Regulatory motif discovery using a population clustering evolutionary algorithm.
CEAS: Cis-regulatory Element Annotation System
Comparison of PubMed, Scopus, Web of Science, and Google Scholar: strengths and weaknesses
Near linear time algorithm to detect community structures in large-scale networks
Where have all the interactions gone? Estimating the coverage of two-hybrid protein interaction maps
Hidden Topic Markov Models
Full correlation analysis of conformational protein dynamics.
Comparing protein interaction networks via a graph match-and-split algorithm.
Stochastic Integration and Differential Equations
A feature-based approach to modeling protein-DNA interactions
Testing ecological models: The meaning of validation
TOPD/FMTS: a new software to compare phylogenetic trees
Inhomogeneous Electron Gas
Discovering Shared Conceptualizations in Folksonomies
Software Architecture: Foundations, Theory and Practice
The Edinburgh human metabolic network reconstruction and its functional analysis.
Issues of context in information retrieval ({IR}): an introduction to the special issue
Pathway analysis of gene signatures predicting metastasis of node-negative primary breast cancer.
The role of site accessibility in microRNA target recognition.
How Meaning Shapes Seeing
PHYSICS AND APPLICATIONS OF MICROFLUIDICS IN BIOLOGY
Gesture Registration, Relaxation, and Reuse for Multi-Point Direct-Touch Surfaces
Graph clustering
Discovery of expression QTLs using large-scale transcriptional profiling in human lymphocytes.
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
Neurometabolic coupling in cerebral cortex reflects synaptic more than spiking activity
Protein-Protein Docking with Backbone Flexibility
A Survey of Kernel and Spectral Methods for Clustering
Measuring online information seeking context, Part 1: Background and method
Measuring online information seeking context, Part 2: Findings and discussion
Inverse Problem Theory and Methods for Model Parameter Estimation
The application of graph theoretical analysis to complex networks in the brain
Accelerating molecular modeling applications with graphics processors
Transcranial Magnetic Stimulation Elicits Coupled Neural and Hemodynamic Consequences
Towards effective browsing of large scale social annotations
Ice-Sheet and Sea-Level Changes
Temporal Fragmentation of Speciation in Bacteria
Understanding member motivation for contributing to different types of virtual communities: a proposed framework
High-throughput genetic interaction mapping in the fission yeast Schizosaccharomyces pombe
Personalized query expansion for the web
A Latent Variable Approach for Meta-Analysis of Gene Expression Data from Multiple Microarray Experiments
Causal Models: How People Think about the World and Its Alternatives
Managing Scientific Data:
AdaRank: a boosting algorithm for information retrieval
Genome-scale Reconstruction of Metabolic Network in Bacillus subtilis Based on High-throughput Phenotyping and Gene Essentiality Data.
A high-resolution atlas of nucleosome occupancy in yeast
The bacterial species definition in the genomic era.
Inferring cellular networks - a review
Paired-End Mapping Reveals Extensive Structural Variation in the Human Genome
User Modeling in the Social Web
The NCBI dbGaP database of genotypes and phenotypes.
Beyond the data deluge: Data integration and bio-ontologies
Scholars Before Researchers: On the Centrality of the Dissertation Literature Review in Research Preparation.
Phylogenomics reshuffles the eukaryotic supergroups.
Adaptive Coevolutionary Networks &#45;&#45; A Review
A document clustering and ranking system for exploring MEDLINE citations.
Combined analog and action potential coding in hippocampal mossy fibers.
Current approaches to gene regulatory network modelling
Semianalytical treatment of solvation for molecular mechanics and dynamics
{pK$_{a}$'s} of ionizable groups in proteins: atomic detail from a continuum electrostatic model
Dendritic computation.
BNDB - the Biochemical Network Database.
Biological SOAP servers and web services provided by the public sequence data bank.
Collaborative Research Across Disciplinary and Organizational Boundaries
A genome-wide association study of global gene expression
From biophysics to evolutionary genetics: statistical aspects of gene regulation.
Electrostatic aspects of proteinâ€“protein interactions
Neanderthals in central Asia and Siberia
Authors vs. readers: a comparative study of document metadata and content in the www
Web Search Personalization via Social Bookmarking and Tagging
DBpedia: A Nucleus for a Web of Open Data
A Survey of Autonomic Computing Systems
The Role of Chromatin during Transcription
Graph theoretical analysis of complex networks in the brain
A default mode of brain function: A brief history of an evolving idea
Microbial diversity - insights from population genetics
Microbial population structures in the deep marine biosphere.
Processing: A Programming Handbook for Visual Designers and Artists
Chimpanzees Are Rational Maximizers in an Ultimatum Game
Evidence Contrary to the Statistical View of Boosting
In praise of tedious anatomy.
Predicting Faults from Cached History
NLTK: The Natural Language Toolkit
Complex Adaptive Systems: An Introduction to Computational Models of Social Life (Princeton Studies in Complexity)
Generative Social Science: Studies in Agent-Based Computational Modeling (Princeton Studies in Complexity)
The effect of extrinsic motivation on user behavior in a collaborative information finding system
Forward and reverse hippocampal place-cell sequences during ripples
Ensemble Tracking
Dynamo: Amazon's Highly Available Key-Value Store
Near-Optimal Hashing Algorithms for Approximate Nearest Neighbor in High Dimensions
Representing default knowledge in biomedical ontologies: application to the integration of anatomy and phenotype ontologies
Visual competition
Cluster-Buster: Finding dense clusters of motifs in DNA sequences
Drugâ€”target network
Stress-induced mutagenesis in bacteria.
Microformats: Empowering Your Markup for Web 2.0
Identification of new drug classification terms in textual resources.
An information theoretical approach to prefrontal executive function
Modeling relationships at multiple scales to improve accuracy of large recommender systems
Putting Beta-Diversity on the Map: Broad-Scale Congruence and Coincidence in the Extremes
Gene duplication and the adaptive evolution of a classic genetic switch
Quantifying the evolutionary dynamics of language
Linguistics: An invisible hand
Frequency of word-use predicts rates of lexical evolution throughout Indo-European history
{The development of features in object concepts}
Intrinsic fluctuations within cortical systems account for intertrial variability in human behavior.
Protein stability imposes limits on organism complexity and speed of molecular evolution
The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics.
Cooperative Learning
Colloquium: Light scattering by particle and hole arrays
A survey on routing protocols for wireless sensor networks
Statistical mechanics of cellular automata
A systematic strategy for large-scale analysis of genotype phenotype correlations: identification of candidate genes involved in African trypanosomiasis.
Protein-protein binding is often associated with changes in protonation state
Sociology and, of and in Web 2.0: Some Initial Considerations
Docking and scoring protein complexes: CAPRI 3rd Edition
Construction and analysis of non-Poisson stimulus-response models of neural spiking activity.
Discovering and detecting transposable elements in genome sequences
The Chlamydomonas Genome Reveals the Evolution of Key Animal and Plant Functions
Analysis of topological characteristics of huge online social networking services
OSCAR: One-class SVM for accurate recognition of cis-elements
Strong atom-field coupling for Bose-Einstein condensates in an optical cavity on a chip
Discriminative motif discovery in DNA and protein sequences using the DEME algorithm.
LigandScout:â€‰ 3-D Pharmacophores Derived from Protein-Bound Ligands and Their Use as Virtual Screening Filters
Including metabolite concentrations into flux balance analysis: thermodynamic realizability as a constraint on flux distributions in metabolic networks
Zyzzyva: speculative byzantine fault tolerance
Sinfonia: a new paradigm for building scalable distributed systems
VirtualPower: coordinated power management in virtualized enterprise systems
Towards Knowledge Management Based on Harnessing Collective Intelligence on the Web
MicroRNA expression profiling of human breast cancer identifies new markers of tumor subtype.
Very fast empirical prediction and rationalization of protein pK<SUB><FONT SIZE='-1'>a</FONT></SUB> values
DAVID: Database for Annotation, Visualization, and Integrated Discovery
Pellet: A practical OWL-DL reasoner
{FaCT}++ Description Logic Reasoner: System Description
Approximate accelerated stochastic simulation of chemically reacting systems
Folksonomies and clustering in the collaborative system CiteULike
The Adaptive Web: Methods and Strategies of Web Personalization
Network-based classification of breast cancer metastasis.
{The EMBL Nucleotide Sequence Database}
myExperiment: social networking for workflow-using e-scientists
Genome-wide detection and characterization of positive selection in human populations
A second generation human haplotype map of over 3.1 million SNPs
Living with Noisy Genes: How Cells Function Reliably with Inherent Variability in Gene Expression
Which evolutionary processes influence natural genetic variation for phenotypic traits?
Recent and ongoing selection in the human genome
Specialization and evolution of endogenous small RNA pathways.
The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases
The necessary junk: new functions for transposable elements
Statistical physics of social dynamics
The Strengthening the Reporting of Observational Studies in Epidemiology (STROBE) statement: guidelines for reporting observational studies.
Clustering Molecular Dynamics Trajectories: 1. Characterizing the Performance of Different Clustering Algorithms
Recent developments in methodologies for calculating the entropy and free energy of biological systems by computer simulation
Generative versus discriminative methods for object recognition
Games, Motivation, and Learning: A Research and Practice Model
Functional connectivity estimation in fMRI data: Influence of preprocessing and time course selection.
Computer Networking: A Top-Down Approach (4th Edition)
Interferon modulation of cellular microRNAs as an antiviral mechanism
Workflow based framework for life science informatics
The Life Sciences Semantic Web is Full of Creeps!
Social force model for pedestrian dynamics
The Semantic Web Vision: Where Are We?
Copy Number Variants and Common Disorders: Filling the Gaps and Exploring Complexity in Genome-Wide Association Studies
Bloodless FMRI.
Brain dynamics underlying the nonlinear threshold for access to consciousness.
High-resolution structure prediction and the crystallographic phase problem
An ecological and evolutionary perspective on human-microbe mutualism and disease.
Recognition memory and the medial temporal lobe: a new perspective
Comparing clusteringsâ€”an information based distance
SuperTarget and Matador: resources for exploring drug-target relationships.
Network Analysis of Oncogenic Ras Activation in Cancer
Quantum Rabi Oscillation: A Direct Test of Field Quantization in a Cavity
Tutorial on Agent-Based Modeling and Simulation PART 2: How to Model with Agents
Descartes' Error
Early experiences with personal health records.
Network modeling links breast cancer susceptibility and centrosome dysfunction
Folksonomies and science communication. A mash-up of professional science databases and Web 2.0 services
The Distributed Annotation System
A Survey of Explanations in Recommender Systems
Towards extracting flickr tag semantics
Proteins, drug targets and the mechanisms they control: the simple truth about complex networks
The Genomic Landscapes of Human Breast and Colorectal Cancers
How {Flickr} helps us make sense of the world: context and content in community-contributed media collections
Information seeking behavior of academic scientists
The untapped potential of virtual game worlds to shed light on real world epidemics
Tagging tagging. Analysing user keywords in scientific bibliography management systems.
eggNOG: automated construction and annotation of orthologous groups of genes.
Exploiting Availability Prediction in Distributed Systems
Ohno's dilemma: Evolution of new genes under continuous selection
We gather together: insulators and genome organization
Something from nothing&nbsp;&#x2212;&nbsp;bridging the gap between constraint-based and kinetic modelling
Revisiting LÃ©vy flight search patterns of wandering albatrosses, bumblebees and deer
microRNAs join the p53 network--another piece in the tumour-suppression puzzle.
e-Science and its implications
The middle way
Web 2.0 Architectures: What Entrepreneurs and Information Architects Need to Know
Ten Simple Rules for Doing Your Best Research, According to Hamming
Contributions to accelerating atmospheric CO2 growth from economic activity, carbon intensity, and efficiency of natural sinks
ChEBI: a database and ontology for chemical entities of biological interest
"Decision Theory: What ""Should"" the Nervous System Do?"
Social Decision-Making: Insights from Game Theory and Neuroscience
Reproducibility of microarray data: a further analysis of microarray quality control (MAQC) data.
Construction, visualisation, and clustering of transcription networks from microarray expression data.
Altruism: A Review of Recent Theory and Research
Chromatin Modifications and Their Function
Time Discounting and Time Preference: A Critical Review
Towards better understanding of folksonomic patterns
Learning with Semantic Wikis
Ontology Evolution
High-Resolution Crystal Structure of an Engineered Human  2-Adrenergic G Protein Coupled Receptor
Network Analysis for Wikipedia
PubCrawler: keeping up comfortably with PubMed and GenBank.
Measurement and analysis of online social networks
Wordom: a program for efficient analysis of molecular dynamics simulations
Genetic basis of proteome variation in yeast
Robustness of community structure in networks
Community structure in directed networks
Evolutionary Models for Formation of Network Motifs and Modularity in the Saccharomyces Transcription Factor Network
Integration of biological networks and gene expression data using Cytoscape.
Power of the Few vs. Wisdom of the Crowd: Wikipedia and the Rise of the Bourgeoisie
Cooperation and quality in wikipedia
Does it matter who contributes: a study on featured articles in the german wikipedia
Self-Managed Systems: an Architectural Challenge
Quantum entanglement
{{I}ntroduction to {C}osmology}
Extracting Trust from Domain Analysis: A Case Study on the Wikipedia Project
The Hidden Order of Wikipedia
Web Service Infrastructure for Chemoinformatics
Social Rewarding in Wiki Systems â€“ Motivating the Community
Social bookmarking and exploratory search
User-friendly functional programming for web mashups
Teachersâ€™ pedagogical beliefs and their planning and conduct of computer-mediated classroom lessons
Ontology visualization methods---a survey
PubMed related articles: a probabilistic topic-based model for content similarity
All-atom empirical force field for nucleic acids: I. Parameter optimization based on small molecule and condensed phase macromolecular target data
BotHunter: Detecting Malware Infection Through IDS-Driven Dialog Correlation
A Universal Framework for Regulatory Element Discovery across All Genomes and Data Types
A theory of human motivation
Algorithmic Game Theory
Genomic analysis of human microRNA transcripts
Applying collaborative filtering techniques to movie search for better ranking and browsing
A survey of architecture design rationale
Association scan of 14,500 nonsynonymous SNPs in four diseases identifies autoimmunity variants.
Frontiers of biomedical text mining: current progress
Dissecting a circuit for olfactory behaviour in Caenorhabditis elegans
Transgenic strategies for combinatorial expression of fluorescent proteins in the nervous system
Statistical evaluation of alternative models of human evolution
Direct selection of human genomic loci by microarray hybridization.
First-passage times in complex scale-invariant media
Gaussian Processes for Machine Learning (Adaptive Computation and Machine Learning)
Mammalian mirtron genes.
Metamaterial Electromagnetic Cloak at Microwave Frequencies
Detecting Emotion in Music
Detecting Coevolution in and among Protein Domains
DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis.
Extracting gene expression patterns and identifying co-expressed genes from microarray data reveals biologically responsive processes
Information Technology and the Changing Fabric of Organization
Whose Space? Differences Among Users and Non-Users of Social Network Sites
Information Literacy
Timescales of genetic and epigenetic inheritance.
Rational design of memory in eukaryotic cells.
The Piwi-piRNA Pathway Provides an Adaptive Defense in the Transposon Arms Race
A Gene Regulatory Network Subcircuit Drives a Dynamic Pattern of Gene Expression
Cultural recycling of cortical maps.
Publicly Private and Privately Public: Social Networking on YouTube
Socially augmenting employee profiles with people-tagging
The Gene Ontology project in 2008
28-Way vertebrate alignment and conservation track in the UCSC Genome Browser
SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing
High-resolution, single-molecule measurements of biomolecular motion.
Next Generation Simulation Tools: The Systems Biology Workbench and BioSPICE Integration
Exploring e-Science: An Introduction
Transforming classifier scores into accurate multiclass probability estimates
Essential Software Architecture
Contributing to Public Document Repositories: A Critical Mass Theory Perspective
Population Genomics: Whole-Genome Analysis of Polymorphism and Divergence in Drosophila simulans
An Exceptionally Simple Theory of Everything
Spatial Presence and Emotions during Video Game Playing: Does It Matter with Whom You Play?
Models for synthetic biology
Elements of Information Theory 2nd Edition (Wiley Series in Telecommunications and Signal Processing)
Qtag: tagging as a means of rating, opinion-expressing, sharing and visualizing
Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures.
Evolution of genes and genomes on the Drosophila phylogeny.
High-Throughput Identification of Chemistry in Life Science Texts
Evolutionary rate analyses of orthologs and paralogs from 12 Drosophila genomes
The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration
Improved detection of overrepresentation of Gene-Ontology annotations with parent child analysis
Comparative genome analysis across a kingdom of eukaryotic organisms: Specialization and diversification in the Fungi
Distribution of node characteristics in complex networks.
Short pyrosequencing reads suffice for accurate microbial community analysis
Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs.
MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data
Gossip as an alternative for direct observation in games of indirect reciprocity
Neural Ensembles in CA3 Transiently Encode Paths Forward of the Animal at a Decision Point
Actor-network theory and anthropology after science, technology, and society
Executable cell biology.
A general model of prion strains and their pathogenicity.
Epistemic forms and epistemic games: Structures and strategies to guide inquiry
BEAST: Bayesian evolutionary analysis by sampling trees.
The PRET A Rapporter framework: Evaluating digital libraries from the perspective of information work
Input synchrony and the irregular firing of cortical neurons
A survey of genetic human cortical gene expression.
Genome-wide in situ exon capture for selective resequencing
TarBase: A comprehensive database of experimentally supported animal microRNA targets
ManyEyes: a Site for Visualization at Internet Scale
Social Bookmarking for Scholarly Digital Libraries
Creating, Destroying, and Restoring Value in Wikipedia
Gene family evolution across 12 Drosophila genomes.
MORPH: Probabilistic Alignment Combined with Hidden Markov Models of cis-Regulatory Modules
Urban aerosols harbor diverse and dynamic bacterial populations
Computational Analysis of Mouse piRNA Sequence and Biogenesis
Molecular Basis for Evolving Modularity in the Yeast Protein Interaction Network
An ontology for a Robot Scientist
Hitchhiking effects of recurrent beneficial amino acid substitutions in the Drosophila melanogaster genome
Approaches for identifying targets of positive selection
Identification of tissue-specific cis-regulatory modules based on interactions between transcription factors.
Correlation of the Highest-Energy Cosmic Rays with Nearby Extragalactic Objects
Some Practical Guidelines for Effective Sample Size Determination
A nucleosome-guided map of transcription factor binding sites in yeast.
Optical Dilution and Feedback Cooling of a Gram-Scale Oscillator to 6.9 mK
miRBase: tools for microRNA genomics
Can Social Bookmarking Improve Web Search?
A Comparison of Statistical Significance Tests for Information Retrieval Evaluation
Measuring the accuracy of diagnostic systems
Accurate gene-tree reconstruction by learning gene- and species-specific substitution rates across multiple complete genomes.
Distributed community detection in delay tolerant networks
Social network analysis for routing in disconnected delay-tolerant MANETs
Harvesting Wiki Consensus: Using Wikipedia Entries as Vocabulary for Knowledge Management
Web 2.0. Neue Perspektiven fÃ¼r Marketing und Medien
Social network sites: Definition, history, and scholarship
Improving personalized web search using result diversification
Dryad: Distributed Data-Parallel Programs from Sequential Building Blocks
Introduction to Discrete Event Systems
Programming gene expression with combinatorial promoters
Social Software â€“ Status quo und Zukunft
Two-photon laser scanning fluorescence microscopy
Large-scale allosteric conformational transitions of adenylate kinase appear to involve a population-shift mechanism.
Correlated substitution analysis and the prediction of amino acid structural contacts
Adaptive gene expression divergence inferred from population genomics.
Scholarship in the Digital Age: Information, Infrastructure, and the Internet
The neural correlates of subjective value during intertemporal choice.
Cooperation and conflict in quorum-sensing bacterial populations
Analysis of sequence conservation at nucleotide resolution
Phenomenology of perception
A synaptic memory trace for cortical receptive field plasticity
The modular organization of domain structures: insights into protein-protein binding
Text processing through Web services: calling Whatizit
Toward Patterns for Collaborative Knowledge Creation
Visualizing Trends in Knowledge Management
Widespread Monoallelic Expression on Human Autosomes
Control of Membrane Fusion Mechanism by Lipid Composition: Predictions from Ensemble Molecular Dynamics
Identification of key processes underlying cancer phenotypes using biologic pathway analysis.
Counting the Uncountable: Statistical Approaches to Estimating Microbial Diversity
Fast-Forward Playback of Recent Memory Sequences in Prefrontal Cortex During Sleep
A Day in the Life of PubMed: Analysis of a Typical Dayâ€™s Query Log
Social Integration of Robots into Groups of Cockroaches to Control Self-Organized Choices
Pulse oximetry.
The &#8220;Alternative&#8221; Choice of Constitutive Exons throughout Evolution
The road to modularity.
A unified classification system for eukaryotic transposable elements
Reliable prediction of regulator targets using 12 Drosophila genomes.
Signals in social supernets
Social network profiles as taste performances
Technological paradigms and technological trajectories : A suggested interpretation of the determinants and directions of technical change
Clustal W and Clustal X version 2.0.
No consensus exists on search reporting methods for systematic reviews
Systematic reviews need systematic searchers.
Wissen managen im Web 2.0
Economic Origins of Dictatorship and Democracy
Second Life: an overview of the potential of 3-D virtual worlds in medical and health education
Library 2.0 : Service for the next-generation library
Folksonomy and information retrieval
Entanglement in Many-Body Systems
The BellKor solution to the Netflix Prize
JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update
MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes
Adaptive immunity maintains occult cancer in an equilibrium state
A hierarchy of timescales in protein dynamics is linked to enzyme catalysis
Intrinsic motions along an enzymatic reaction trajectory
The Seductive Allure of Neuroscience Explanations
Theory and Limitations of Genetic Network Inference from Microarray Data
The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications.
The Jaynes-Cummings Model
Aspects of Augmented Social Cognition: Social Information Foraging and Social Search
Bayesian decoding of brain images
Evaluating opportunistic routing protocols with large realistic contact traces
A profile-based deterministic sequential Monte Carlo algorithm for motif discovery
Statistical mechanics of Dissipative Particle Dynamics
Compositing digital images
Short-term plasticity in auditory cognition.
A code for transcription initiation in mammalian genomes
Mobiles everywhere: Youth, the mobile phone, and changes in everyday practice
Computational epigenetics
The Role of Ontology in Improving Gazetteer Interaction
A mathematical tool for exploring the dynamics of biological networks
A survey of DNA motif finding algorithms.
Conceptions of information literacy: new perspectives and implications
Social Information Processing in News Aggregation
RFID Systems and Security and Privacy Implications
'I've Got Nothing to Hide' and Other Misunderstandings of Privacy
Recent progress in understanding hydrophobic interactions
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite
What's new in pediatric orthopaedics.
Electromagnetically induced transparency: Optics in coherent media
Transforming the dilemma.
Discerning the ancestry of European Americans in genetic association studies
Virtual machine showdown: stack versus registers
Synchronized delta oscillations correlate with the resting-state functional MRI signal.
The Case Research Strategy in Studies of Information Systems
Towards a Tag-Based User Model: How Can User Model Benefit from Tags?
Children's in-library use of computers in an urban public library
Barriers to renewable energy penetration; a framework for analysis
Induced Pluripotent Stem Cell Lines Derived from Human Somatic Cells
Theory of mind is independent of episodic memory.
Predicting protein function from sequence and structure
A survey method for characterizing daily life experience: the day reconstruction method.
Fluctuation-Dissipation Theorem in an Aging Colloidal Glass
Evaluation of digital libraries
Distinguishing protein-coding and noncoding genes in the human genome
Long-term evolution of transposable elements
miRNAMap 2.0: genomic maps of microRNAs in metazoan genomes.
The tragedy of the commons in evolutionary biology
Simple BM25 extension to multiple weighted fields
BiNoM: a Cytoscape plugin for manipulating and analyzing biological networks.
Gene expression profiling by massively parallel sequencing
Youtube traffic characterization: a view from the edge
Knowledge Management: The Catalyst for Electronic Government
Using protein complexes to predict phenotypic effects of gene mutation
Does the h index have predictive power?
Using query contexts in information retrieval
Mean shift, mode seeking, and clustering
A standard protocol for describing individual-based and agent-based models
A cell-centered approach to developmental biology
IGF-1 receptor regulates lifespan and resistance to oxidative stress in mice.
Verbal working memory and sentence comprehension.
Exhibit: lightweight structured data publishing
Community Marketing Management. Wie man Online-Communities im Internet-Zeitalter des Web 2.0 zum Erfolg fÃ¼hrt
Content Reuse and Interest Sharing in Tagging Communities
Personalized information retrieval based on context and ontological knowledge
A social network-based system for supporting interactive collaboration in knowledge sharing over peer-to-peer network
The molecular architecture of the nuclear pore complex.
RNA-mediated epigenetic programming of a genome-rearrangement pathway
Determining the architectures of macromolecular assemblies.
RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo
RNA polymerase is poised for activation across the genome.
Choosing BLAST options for better detection of orthologs as reciprocal best hits
An assessment of the uses of homologous interactions
Who blogs? Personality predictors of blogging
Using expression profiling data to identify human microRNA targets
Induction of Pluripotent Stem Cells from Adult Human Fibroblasts by Defined Factors
Switching from Repression to Activation: MicroRNAs Can Up-Regulate Translation
A biochemical approach to identifying microRNA targets.
DTN Routing as a Resource Allocation Problem
Genome-Wide Experimental Determination of Barriers to Horizontal Gene Transfer
Professional Development and Teacher Learning: Mapping the Terrain
Models in Information Retrieval
Support vector machines for classification and regression
Cache-Oblivious Algorithms
Ping, Tags und Social Software - Communitybildung und Medienconvergenz durch neue Publikationsformen im Internet
DÃ©jÃ  vu--a study of duplicate citations in Medline.
The role of context in object recognition.
Prediction of both conserved and nonconserved microRNA targets in animals
Patterns for Computer-Mediated Interaction (Wiley Software Patterns Series)
The Design of Coiled-Coil Structures and Assemblies
Socket: a program for identifying and analysing coiled-coil motifs within protein structures.
Using Web 2.0 for learning in the community
The FlyBase database of the Drosophila Genome Projects and community literature. The FlyBase Consortium.
The rate of DNA evolution: Effects of body size and temperature on the molecular clock.
The influence of genetic variation on gene expression.
RReportGenerator: automatic reports from routine statistical analysis using R.
Robust classification of rare queries using web knowledge
The relationship between Precision-Recall and ROC curves
Modeling the Shape of the Scene: A Holistic Representation of the Spatial Envelope
The Power of Feedback
Intrinsic dynamics of enzymes in the unbound state and relation to allosteric regulation
A modular network model of aging
Searching for statistically significant regulatory modules.
Identification of transposable elements using multiple alignments of related genomes.
Intention, Plans, and Practical Reason
Nested effects models for high-dimensional phenotyping screens
CisModule: De novo discovery of cis-regulatory modules by hierarchical mixture modeling
Disruption of Large-Scale Brain Systems in Advanced Aging
Noise propagation and signaling sensitivity in biological networks: A role for positive feedback
Broad network-based predictability of Saccharomyces cerevisiae gene loss-of-function phenotypes
Inhibition and Brain Work
Multivariate analyses in microbial ecology
Topic and Role Discovery in Social Networks with Experiments on Enron and Academic Email
Web 2.0 technologies for undergraduate and postgraduate medical education: an online survey
Survey of Wireless Indoor Positioning Techniques and Systems
Impaired liver regeneration in Nrf2 knockout mice: role of ROS-mediated insulin/IGF-1 resistance.
Dimensionality and dynamics in the behavior of C. elegans
Pegasos: Primal Estimated sub-GrAdient SOlver for SVM
Optical Quantum Computing
Getting started in probabilistic graphical models
Automated manipulation of systems biology models using libSBML within Taverna workflows.
Eigengene networks for studying the relationships between co-expression modules
What Makes Professional Development Effective? Strategies That Foster Curriculum Implementation
A systematic strategy for the discovery of candidate genes responsible for phenotypic variation
The new mutation theory of phenotypic evolution
Genetically determined differences in learning from errors.
Assessing the significance of chromosomal aberrations in cancer: Methodology and application to glioma
Learning the Discriminative Power-Invariance Trade-Off
Autonomously semantifying wikipedia
Web 2.0, Library 2.0, and the Hyperlinked Library
Fundamentals of Algebraic Graph Transformation (Monographs in Theoretical Computer Science. An EATCS Series)
Co-evolving residues in membrane proteins
Identification and classification of hubs in brain networks.
Learning with Kernels: Support Vector Machines, Regularization, Optimization, and Beyond (Adaptive Computation and Machine Learning)
The health impacts of globalisation: a conceptual framework
Software Engineering: (Update) (8th Edition)
Transforming Models with ATL
Quantal Phase Factors Accompanying Adiabatic Changes
Predicting Protein Function with Hierarchical Phylogenetic Profiles: The Gene3D Phylo-Tuner Method Applied to Eukaryotic Genomes
Putative promoter regions of miRNA genes involved in evolutionarily conserved regulatory systems among vertebrates
Identification of phylogenetically conserved microRNA cis-regulatory elements across 12 Drosophila species
Bayesian ranking of biochemical system models
Illuminating the mechanistic roles of enzyme conformational dynamics
The Theory of the Growth of the Firm
Different processing phases for features, figures, and selective attention in the primary visual cortex.
The Big Switch: Rewiring the World, from Edison to Google
An overview of image-processing methods for Affymetrix GeneChips
Virus-induced gene silencing in plants
The entrepreneur's business model: toward a unified perspective
High-throughput sequence alignment using Graphics Processing Units
Reduced resting-state brain activity in the Ã¢Â€Âœdefault networkÃ¢Â€Â in normal aging
When do researchers collaborate? Toward a model of collaboration propensity
Social Interactions Across Media: Interpersonal Communication on the Internet, Telephone and            Face-to-Face
The OPLS [optimized potentials for liquid simulations] potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin
Dissipative particle dynamics: Bridging the gap between atomistic and mesoscopic simulation
The missing term in effective pair potentials
Principles of Condensed Matter Physics
Manifold Regularization: A Geometric Framework for Learning from Labeled and Unlabeled Examples
Visualizing Data: Exploring and Explaining Data with the Processing Environment
TFBS identification based on genetic algorithm with combined representations and adaptive post-processing
A Manual for Writers of Research Papers, Theses, and Dissertations, Seventh Edition: Chicago Style for Students and Researchers (Chicago Guides to Writing, Editing, and Publishing)
Molecular dynamics simulations of a fluid bilayer of dipalmitoylphosphatidylcholine at full hydration, constant pressure, and constant temperature
Polymorphic transitions in single crystals: A new molecular dynamics method
Clustering of the self-organizing map
{SMART}, a simple modular architecture research tool: identification of signaling domains.
A systematic interaction map of validated kinase inhibitors with Ser/Thr kinases
Combining evidence using p-values: application to sequence homology searches
{T}axonomy-driven {C}omputation of {P}roduct {R}ecommendations
Comparing association network algorithms for reverse engineering of large-scale gene regulatory networks: synthetic versus real data
Explicit ion, implicit water solvation for molecular dynamics of nucleic acids and highly charged molecules
The digital divide and development
Delving into the digital divide
Analyzing e-government research: Perspectives, philosophies, theories, methods, and practice
The biological impact of mass-spectrometry-based proteomics.
KEGG for linking genomes to life and the environment.
Information-based functional brain mapping.
Reconstruction of ancestral protein interaction networks for the bZIP transcription factors.
MIRIAM Resources: tools to generate and resolve robust cross-references in Systems Biology
RETHINKING THE THEORETICAL FOUNDATION OF SOCIOBIOLOGY
A scalable quantum computer with ions in an array of microtraps
Neural correlates of trust
Widespread microRNA repression by Myc contributes to tumorigenesis
Mobile DNA elements in primate and human evolution
AGEMAP: A Gene Expression Database for Aging in Mice
Positive selection at the protein network periphery: Evaluation in terms of structural constraints and cellular context
Computing topological parameters of biological networks
Reaching for high-hanging fruit in drug discovery at protein
The origin of protein interactions and allostery in colocalization.
The molecular sociology of the cell
Dynamic personalities of proteins
High-frequency single-photon source with polarization control
Coral Reefs Under Rapid Climate Change and Ocean Acidification
Framework for a protein ontology.
Teachers' Beliefs and Educational Research: Cleaning up a Messy Construct
TreeFam: 2008 Update.
Sparse inverse covariance estimation with the graphical lasso
The Personal Learning Environment and the human condition: from theory to teaching practice
Patterns of Personal Learning Environments
The coming functionality mash-up in Personal Learning Environments
Design trajectories: four experiments in PLE implementation
DNA Transposons and the Evolution of Eukaryotic Genomes
Is evolvability evolvable?
Coupling and coordination in gene expression processes: a systems biology view.
Parallel Tracking and Mapping for Small AR Workspaces
Word learning as Bayesian inference
Information measures, effective complexity, and total information
Prefrontal cortex and basal ganglia control access to working memory
SKOS: Simple Knowledge Organisation for the Web
Dynamic Programming Algorithm Optimization for Spoken Word Recognition
A biomolecular force field based on the free enthalpy of hydration and solvation: the GROMOS force-field parameter sets 53A5 and 53A6.
Show me the data
A Survey of Clustering Data Mining Techniques
A map of human cancer signaling.
A semantic tool to support navigation in a folksonomy
The 4-Hour work Week: Escape 9-5, Live Anywhere, and Join the New Rich
STITCH: interaction networks of chemicals and proteins.
Connectionist learning procedures
Evolution of complex modular biological networks
Effective transcription factor binding site prediction using a combination of optimization, a genetic algorithm and discriminant analysis to capture distant interactions
Behavioural report of single neuron stimulation in somatosensory cortex.
Host genome surveillance for retrotransposons by transposon-derived proteins
Visualizing spatially correlated dynamics that directs RNA conformational transitions
Locally dynamic synaptic learning rules in pyramidal neuron dendrites.
The issue of quality in qualitative research
Wikis in education:: is public better?
Game design and learning: a conjectural analysis of how massively multiple online role-playing games (MMORPGs) foster intrinsic motivation
Evaluating tagging behavior in social bookmarking systems: metrics and design heuristics
NEURONAL CIRCUITS OF THE NEOCORTEX
The quest for quality tags
Generic eukaryotic core promoter prediction using structural features of DNA
Writing for Friends and Family: The Interpersonal Nature of Blogs
Protein crystallography for non-crystallographers, or how to get the best (but not more) from published macromolecular structures.
The properties of high-dimensional data spaces: implications for exploring gene and protein expression data
Userscripts for the Life Sciences
Be smart, exercise your heart: exercise effects on brain and cognition.
CONTRAST: a discriminative, phylogeny-free approach to multiple informant de novo gene prediction
Visual Perception and the Statistical Properties of Natural Scenes
The Text Mining Handbook: Advanced Approaches in Analyzing Unstructured Data
Reprogramming of human somatic cells to pluripotency with defined factors.
Integration of Horizontally Transferred Genes into Regulatory Interaction Networks Takes Many Million Years
Internet Self-Efficacy and the Psychology of the Digital Divide
ONCOMINE: A Cancer Microarray Database and Integrated Data-Mining Platform
Metcalfe's Law, Web 2.0, and the Semantic Web
Recent acceleration of human adaptive evolution
The Web 2.0 way of learning with technologies
Comparative Genomics Search for Losses of Long-Established Genes on the Human Lineage
Algorithm + Strategy = Parallelism
{E-research: Methods, Strategies, and Issues}
The microRNA.org resource: targets and expression
A Predictive Model for Transcriptional Control of Physiology in a Free Living Cell
Bid, ask and transaction prices in a specialist market with heterogeneously informed traders
Thermodynamics-Based Metabolic Flux Analysis
Next-generation sequencing transforms today's biology
Communication as Information-Seeking: The Case for Mobile Social Software for Developing Regions
What Anyone Can Know: The Privacy Risks of Social Networking Sites
Social Software for Life-long Learning
Citizens as sensors: the world of volunteered geography
A Comparison between Cellular Encoding and Direct Encoding for Genetic Neural Networks
Modulation of FoxO signaling in human hepatoma cells by exposure to copper or zinc ions
Deriving a large scale taxonomy from wikipedia
Active Learning with Feedback on Features and Instances
Software Design and Architecture The once and future focus of software engineering
Analyzing functional connectivity using a network likelihood model of ensemble neural spiking activity.
DrugBank: a knowledgebase for drugs, drug actions and drug targets.
Predicting expression patterns from regulatory sequence in Drosophila segmentation.
Mining concept-drifting data streams using ensemble classifiers
A burst of protein sequence evolution and a prolonged period of asymmetric evolution follow gene duplication in yeast.
Extending pathways based on gene lists using InterPro domain signatures
Ongoing in vivo experience triggers synaptic metaplasticity in the neocortex.
Evaluating the accuracy of implicit feedback from clicks and query reformulations in Web search
Functionally distinct regulatory RNAs generated by bidirectional transcription and processing of microRNA loci
Self-similarity of complex networks and hidden metric spaces
The Role of Friends' Appearance and Behavior on Evaluations of Individuals on Facebook: Are We Known by the Company We Keep?
Natural similarity measures between position frequency matrices with an application to clustering
SherLoc: high-accuracy prediction of protein subcellular localization by integrating text and protein sequence data
Three-Dimensional Super-Resolution Imaging by Stochastic Optical Reconstruction Microscopy
Using multivariate statistics
Biomedical ontologies: a functional perspective
The Art and Science of Software Architecture
Structural holes and good ideas
Corpus annotation for mining biomedical events from literature.
Factors limiting tropical rain forest regeneration in abandoned pasture: Seed rain, seed germination, microclimate, and soil
A quantitative analysis of kinase inhibitor selectivity.
Protein-protein interaction networks and biologyâ€”what's the connection?
Network Legos: Building Blocks of Cellular Wiring Diagrams
Mutation-Selection Models of Codon Substitution and Their Use to Estimate Selective Strengths on Codon Usage
The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases.
Ultraconservation identifies a small subset of extremely constrained developmental enhancers.
Feature selection based on mutual information: criteria of max-dependency, max-relevance, and min-redundancy
The coevolution of choosiness and cooperation
Direct Observation of Hierarchical Folding in Single Riboswitch Aptamers
SeqAn An efficient, generic C++ library for sequence analysis
Endogenous human microRNAs that suppress breast cancer metastasis.
Dual role for argonautes in microRNA processing and posttranscriptional regulation of microRNA expression.
Scalable semantic web data management using vertical partitioning
RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation.
Getting to the Root of miRNA-Mediated Gene Silencing
Climate Change, Deforestation, and the Fate of the Amazon
Identification of Host Proteins Required for HIV Infection Through a Functional Genomic Screen
A correlated topic model of Science
Designed Protein-Protein Association
Evolution and Selection in Yeast Promoters: Analyzing the Combined Effect of Diverse Transcription Factor Binding Sites
An iterative thresholding algorithm for linear inverse problems with a sparsity constraint
Evigan: a hidden variable model for integrating gene evidence for eukaryotic gene prediction
ROC analysis: applications to the classification of biological sequences and 3D structures
Functional evolution of the p53 regulatory network through its target response elements
Specific expression of long noncoding RNAs in the mouse brain.
Computer-supported collaborative learning: An historical perspective
Foundations for structured programming with GADTs
An integrated system for studying residue coevolution in proteins
Trust-aware Recommender Systems
LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons
Emergent Community Structure in Social Tagging Systems
Most Caenorhabditis elegans microRNAs Are Individually Not Essential for Development or Viability
On the relation between promoter divergence and gene expression evolution.
Knowledge, Knowledge Work and Organizations: An Overview and Interpretation
Valgrind: a framework for heavyweight dynamic binary instrumentation
Measuring emotion: the Self-Assessment Manikin and the Semantic Differential.
Data mining in course management systems: Moodle case study and tutorial
Supervised Topic Models
Protein interactions in human genetic diseases.
The open research system: a web-based metadata and data repository for collaborative research
Estimating a state-space model from point process observations.
Translational control of intron splicing in eukaryotes.
Precise auditory-vocal mirroring in neurons for learned vocal communication
Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R
Statistical Decision Theory and Bayesian Analysis
A Measurement of Excess Antenna Temperature at 4080 Mc/s
Programming biomolecular self-assembly pathways
Extending assembly of short DNA sequences to handle error
High-confidence prediction of global interactomes based on genome-wide coevolutionary networks
The evolutionary dynamics of the Saccharomyces cerevisiae protein interaction network after duplication
Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight?
Human cis natural antisense transcripts initiated by transposable elements.
ReAS: Recovery of Ancestral Sequences for Transposable Elements from the Unassembled Reads of a Whole Genome Shotgun
Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package 'annotationTools'
The 20 years of PROSITE.
Hydrocortisone therapy for patients with septic shock.
Computational analysis of human protein interaction networks.
Gene Ontology annotation quality analysis in model eukaryotes.
CORUM: the comprehensive resource of mammalian protein complexes.
Towards knowledge-based gene expression data mining
Comparison of energy expenditure in adolescents when playing new generation and sedentary computer games: cross sectional study
Let Me Count the Ways: Mechanisms of Gene Regulation by miRNAs and siRNAs
Effects of Molecular Memory and Bursting on Fluctuations in Gene Expression
Construction of a 3D probabilistic atlas of human cortical structures
Resource Mobilization and Social Movements: A Partial Theory
Competitive Advantage of Nations
Regulation of spike timing in visual cortical circuits
In Silico Detection of Sequence Variations Modifying Transcriptional Regulation
Techniques for clustering gene expression data.
Developing optimal search strategies for detecting clinically sound studies in MEDLINE.
The Foundations of Cost-Sensitive Learning
Designing Run-Time Fault-Tolerance Using Dynamic Updates
Interpreting fMRI data: maps, modules and dimensions
On the relationship between emotion and cognition
The Human-Computer Interaction Handbook: Fundamentals, Evolving Technologies and Emerging Applications, Second Edition (Human Factors and Ergonomics)
The global record of memory in hippocampal neuronal activity
Methodological Issues in Lipid Bilayer Simulations
On testing the significance of sets of genes
Analyzing time series gene expression data
The design and implementation of typed scheme
NetworkBLAST: comparative analysis of protein networks.
Experimental Validation of Molecular Dynamics Simulations of Lipid Bilayers: A New Approach
A comparison of meta-analysis methods for detecting differentially expressed genes in microarray experiments
Seeing is believing: the effect of brain images on judgments of scientific reasoning.
The exposure of cyclists, car drivers and pedestrians to traffic-related air pollutants
Ignorance in Educational Research Or, How Can You Not Know That?
Membrane lipids: where they are and how they behave
Social Information Access: The Other Side of the Social Web
Calculation of protein-ligand binding affinities.
The City as a Growth Machine: Toward a Political Economy of Place
New experiences enhance coordinated neural activity in the hippocampus.
A statistical toolbox for metagenomics: assessing functional diversity in microbial communities
Maps of random walks on complex networks reveal community structure
Hydration Thermodynamic Properties of Amino Acid Analogues: A Systematic Comparison of Biomolecular Force Fields and Water Models
Contextual Recommendation
New resampling method for evaluating stability of clusters.
Meta-analysis of Go/No-go tasks demonstrating that fMRI activation associated with response inhibition is task-dependent.
Transgenic inhibition of synaptic transmission reveals role of CA3 output in hippocampal learning.
Model-based variance-stabilizing transformation for Illumina microarray data.
Alignment Uncertainty and Genomic Analysis
The Frequency Dependence of Osmo-Adaptation in Saccharomyces cerevisiae
Reactivation of experience-dependent cell assembly patterns in the hippocampus
EzArray: a web-based highly automated Affymetrix expression array data management and analysis system.
Whole-genome sequencing and variant discovery in C. elegans.
100% Accuracy in Automatic Face Recognition
Information-Based Objective Functions for Active Data Selection
LIBRARIES, SOCIAL SOFTWARE AND DISTANCE LEARNERS: BLOG IT, TAG IT, SHARE IT!
Why is real-world visual object recognition hard?
Complete Chemical Synthesis, Assembly, and Cloning of a Mycoplasma genitalium Genome
InParanoid 6: eukaryotic ortholog clusters with inparalogs.
Core Affect and the Psychological Construction of Emotion
Core Affect, Prototypical Emotional Episodes, and Other Things Called Emotion: Dissecting the Elephant
Recommendations in taste related domains: collaborative filtering vs. social filtering
A stochastic grammar of images
Defining functional distances over gene ontology.
Pyrosequencing Sheds Light on DNA Sequencing
Acceptance of blog usage: The roles of technology acceptance, social influence and knowledge sharing motivation
Hybrid image segmentation using watersheds and fast region merging
Functional connectivity of default mode network components: Correlation, anticorrelation, and causality
Topic sentiment mixture: modeling facets and opinions in weblogs
Meta-analysis of breast cancer microarray studies in conjunction with conserved cis-elements suggest patterns for coordinate regulation
Semantics of transactional memory and automatic mutual exclusion
Genome-wide analysis of transcript isoform variation in humans.
Computational discovery of cis-regulatory modules in Drosophila without prior knowledge of motifs
Phylogenetics and speciation
Sparse Representation of Sounds in the Unanesthetized Auditory Cortex
A survey of trust in computer science and the Semantic Web
Flexible informatics for linking experimental data to mathematical models via DataRail
Beyond Digital Incunabula: Modeling the Next Generation of Digital Libraries
Consistency in networks of relations
Map-Reduce for Machine Learning on Multicore
Technological Discontinuities and Organizational Environments
Epigenetic regulation and the variability of gene expression
GraphCrunch: A tool for large network analyses
Identification of gene interactions associated with disease from gene expression data using synergy networks.
MicroRNA-373 induces expression of genes with complementary promoter sequences
Pyrobayes: an improved base caller for SNP discovery in pyrosequences
Bacterial carbon processing by generalist species in the coastal ocean
A single gene network accurately predicts phenotypic effects of gene perturbation in Caenorhabditis elegans
Multimodal human-computer interaction: A survey
Data growth and its impact on the SCOP database: new developments.
The Influence of Teachers' Technology Use on Instructional Practices
Narrative Inquiry: Experience and Story in Qualitative Research
Languages Evolve in Punctuational Bursts
High-resolution mapping of crossovers reveals extensive variation in fine-scale recombination patterns among humans.
SOAP: short oligonucleotide alignment program
Interoperability with Moby 1.0--it's better than sharing your toothbrush!
Mapping trait loci by use of inferred ancestral recombination graphs.
Prioritizing Climate Change Adaptation Needs for Food Security in 2030
Protein production and purification
Automation of in-silico data analysis processes through workflow management systems.
Cancer Proliferation Gene Discovery Through Functional Genomics
Differential Allelic Expression in the Human Genome: A Robust Approach to Identify Genetic and Epigenetic Cis-Acting Mechanisms Regulating Gene Expression
Qualifying the relationship between sequence conservation and molecular function.
Uncertainty in homology inferences: assessing and improving genomic sequence alignment.
Top 10 algorithms in data mining
OpenDMAP: An open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression
GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation
Galois Connections and Fixed Point Calculus
Shot Noise in Mesoscopic Conductors
Short read fragment assembly of bacterial genomes.
Map-reduce-merge: simplified relational data processing on large clusters
Minds on Fire: Open Education, the Long Tail, and Learning 2.0
The end of an architectural era: (it's time for a complete rewrite)
Independent effects of cis- and trans-regulatory variation on gene expression in Drosophila melanogaster
Understanding biological functions through molecular networks
In Silico Immunology
Observation of a single-beam gradient force optical trap for dielectric particles
Teaching Courses Online: A Review of the Research
Natural Actor-Critic
A comparison of common programming languages used in bioinformatics
Membrane fusion
Natural selection has driven population differentiation in modern humans.
Bayesian models based on test statistics for multiple hypothesis testing problems.
The protein folding problem
Peptide and Protein Building Blocks for Synthetic Biology: From Programming Biomolecules to Self-Organized Biomolecular Systems
Gene Network Inference via Structural Equation Modeling in Genetical Genomics Experiments
Statistical issues in the analysis of Illumina data.
ONTO-PERL: An API for supporting the development and analysis of bio-ontologies
LibSBML: an API Library for SBML
Metagenomics: read length matters.
High-resolution mapping and characterization of open chromatin across the genome.
Comparison of likelihood and Bayesian methods for estimating divergence times using multiple gene loci and calibration points, with application to a radiation of cute-looking mouse lemur species
Semantics of context-free languages
Bipartite network projection and personal recommendation
Jane: suggesting journals, finding experts
Phyutility: a phyloinformatics tool for trees, alignments and molecular data
Teens and Social Media
The Problem of Concept Drift: Definitions and Related Work
An analysis of the positional distribution of DNA motifs in promoter regions and its biological relevance
Use of U.S. Croplands for Biofuels Increases Greenhouse Gases Through Emissions from Land-Use Change
Global Change and the Ecology of Cities
The Size, Scale, and Shape of Cities
Comparing patterns of natural selection across species using selective signatures.
The RAST Server: rapid annotations using subsystems technology.
Novelty and topicality in interactive information retrieval
Representing Word Meaning and Order Information in a Composite Holographic Lexicon
Measuring article quality in wikipedia: models and evaluation
Multi-Objective Optimization Using Evolutionary Algorithms
On Ranking Controversies in Wikipedia: Models and Evaluation
Computing Trust from Revision History
A framework for information quality assessment
Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
A Knowledge-Based Search Engine Powered by Wikipedia
Evolution of protein domain promiscuity in eukaryotes
The â€˜digital nativesâ€™ debate: A critical review of the evidence
An Analysis of Topical Coverage of Wikipedia
The invisible substrate of information science
A survey study of critical success factors in agile software projects
Transcription Factors Bind Thousands of Active and Inactive Regions in the Drosophila Blastoderm
ARB: a software environment for sequence data
Bioinformatics challenges of new sequencing technology.
The impact of next-generation sequencing technology on genetics
Text-mining assisted regulatory annotation
Multiple testing on the directed acyclic graph of gene ontology
Forums for citizen journalists? Adoption of user generated content initiatives by online news media
Context-Oriented Programming
Facebook's Privacy Trainwreck: Exposure, Invasion, and Social Convergence
Chaos in a long-term experiment with a plankton community
Front Matter
The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans
Recent progress and future directions in protein-protein docking
Analytic Combinatorics
Land Clearing and the Biofuel Carbon Debt
Quantum State Transfer and Entanglement Distribution among Distant Nodes in a Quantum Network
Quantum Optics
Long Short-Term Memory
Designing Neural Networks Using Genetic Algorithms with Graph Generation System
What the Frog's Eye Tells the Frog's Brain
Language Acquisition
How Patterned Neural Connections Can Be Set Up by Self-Organization
Evolution of the Driving Styles of Anticipatory Agent Remotely Operating a Scaled Model of Racing Car
MEGAN analysis of metagenomic data.
Accurate prediction of protein-protein interactions from sequence alignments using a Bayesian method.
A Global Map of Human Impact on Marine Ecosystems
A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas.
Musicophilia: Tales of Music and the Brain
On the Process of Becoming a Great Scientist
Anne O'Tate: A tool to support user-driven summarization, drill-down and browsing of PubMed search results
Tensor Decompositions and Applications
Social Networking
Systematic functional characterization of cis-regulatory motifs in human core promoters
Tipping elements in the Earth's climate system
Conformational complexity of G-protein-coupled receptors.
Genome-wide approaches to studying chromatin modifications
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
Informetrics at the beginning of the 21st centuryâ€”A review
Regulatory changes underlying expression differences within and between Drosophila species
The Critical Importance of Retrieval for Learning
Statistically optimal analysis of samples from multiple equilibrium states
Exploring hedge identification in biomedical literature
MScanner: a classifier for retrieving Medline citations
Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
Modelling Vague Places with Knowledge from the Web
Imaging in vivo: watching the brain in action
Non-coding RNAs, epigenetics and complexity.
The hippocampus and memory: insights from spatial processing.
Direct multiplexed measurement of gene expression with color-coded probe pairs.
Crowdsourcing as a Model for Problem Solving
From specific gene regulation to genomic networks: a global analysis of transcriptional regulation in Escherichia coli.
Generating multi-GeV electron bunches using single stage laser wakefield acceleration in a 3D nonlinear regime
Using Bayesian Networks to Manage Uncertainty in Student Modeling
MicroRNAs and the advent of vertebrate morphological complexity
Genotype, haplotype and copy-number variation in worldwide human populations
Proportionally more deleterious genetic variation in European than in African populations.
Overview of the Scalable Video Coding Extension of the H.264/AVC Standard
The Price of Robustness
SELEXâ€”A (r)evolutionary method to generate high-affinity nucleic acid ligands
Search log analysis: What it is, what's been done, how to do it
Global trends in emerging infectious diseases
Pyramidal neurons: dendritic structure and synaptic integration
Sequence context affects the rate of short insertions and deletions in flies and primates.
Inference of selection from multiple species alignments.
Is Learning The $n$-th Thing Any Easier Than Learning The First?
An improved relaxed complex scheme for receptor flexibility in computer-aided drug design.
Software Testing Research: Achievements, Challenges, Dreams
An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data.
Extracting interactions between proteins from the literature.
The birth and death of microRNA genes in Drosophila
Modeling Cancer Progression via Pathway Dependencies
Worldwide Human Relationships Inferred from Genome-Wide Patterns of Variation
The Future of Social Networks on the Internet: The Need for Semantics
Rapid Neural Coding in the Retina with Relative Spike Latencies
Modular cell biology: retroactivity and insulation.
Some experiments on the recognition of speech, with one and with two ears
Large-scale screening for novel low-affinity extracellular protein interactions.
Small non-coding RNAs in animal development
Chaos in Dynamical Systems
Monolithic Microfabricated Valves and Pumps by Multilayer Soft Lithography
A careful disorderliness in the proteome: Sites for interaction and targets for future therapies
Graphical Models in a Nutshell
Genome evolution in cyanobacteria: The stable core and the variable shell
Symbiotic gut microbes modulate human metabolic phenotypes.
Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes.
The BioGRID Interaction Database: 2008 update.
Inhibition of return
Here Comes Everybody: The Power of Organizing Without Organizations
Sources of Google Scholar citations outside the Science Citation Index: A comparison between four science disciplines
Selective Blockade of MicroRNA Processing by Lin28
TinyOS: An Operating System for Sensor Networks
PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses
Survey of graph database models
Online detection and sorting of extracellularly recorded action potentials in human medial temporal lobe recordings, in vivo
Initial severity and antidepressant benefits: a meta-analysis of data submitted to the Food and Drug Administration.
Online GIS services for mapping and sharing disease information
Exon level integration of proteomics and microarray data
Network motifs: structure does not determine function.
Classroom Discourse and the Space of Learning
The limits and intensity of Plasmodium falciparum transmission: implications for malaria control and elimination worldwide.
Wikify!: linking documents to encyclopedic knowledge
Mixed membership stochastic blockmodels
Music listening enhances cognitive recovery and mood after middle cerebral artery stroke
Assessment of composite motif discovery methods.
The Evolution of Combinatorial Gene Regulation in Fungi
Different Aspects of Social Network Analysis
Multi-scale computational modelling in biology and physiology
Industry Life Cycles
fdrMotif: identifying cis-elements by an EM algorithm coupled with false discovery rate control
Neuronal oscillations and visual amplification of speech
Scaling laws of marine predator search behaviour
Collective knowledge systems: Where the Social Web meets the Semantic Web
Using the Semantic Web for linking and reusing data across Web 2.0 communities
Database System Concepts
Evolution of protein-coding genes in Drosophila
Large-scale model of mammalian thalamocortical systems
The paradoxical future of digital learning
Pig Latin : A Not-So-Foreign Language for Data Processing
Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex.
Using quality scores and longer reads improves accuracy of Solexa read mapping
What every programmer should know about memory
BOLD Responses Reflecting Dopaminergic Signals in the Human Ventral Tegmental Area
Genome-wide association studies: progress and potential for drug discovery and development
Biostatistical aspects of genome-wide association studies.
The challenge problem for automated detection of 101 semantic concepts in multimedia
Identifying the fundamental units of bacterial diversity: A paradigm shift to incorporate ecology into bacterial systematics
The Exploit: A Theory of Networks (Electronic Mediations)
A skin microRNA promotes differentiation by repressing 'stemness'.
Supporting Awareness among Virtual Teams in a Web-Based Collaborative System: The TeamSCOPE System
Gene-set approach for expression pattern analysis
Social network analysis: A methodological introduction
Selection to minimise noise in living systems and its implications for the evolution of gene expression.
eQED: an efficient method for interpreting eQTL associations using protein networks.
Affective neuroscience of pleasure: reward in humans and animals
Outline of a theory of practice
Empirical comparison of ab initio repeat finding programs
Tagging and searching: Search retrieval effectiveness of folksonomies on the World Wide Web
Categorical Data Analysis: Away from ANOVAs (transformation or not) and towards Logit Mixed Models.
Potential energy functions for atomic-level simulations of water and organic and biomolecular systems.
The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis
Identifying natural images from human brain activity
Broad phylogenomic sampling improves resolution of the animal tree of life
Strong dispersive coupling of a high-finesse cavity to a micromechanical membrane
The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data
Five-Year Wilkinson Microwave Anisotropy Probe Observations: Cosmological Interpretation
"Digital Divide 2.0: ""Generation M"" and Online Social Networking Sites in the Composition Classroom"
A Hierarchy of Temporal Receptive Windows in Human Cortex
Data and Theory Point to Mainly Additive Genetic Variance for Complex Traits
Formulating genome-scale kinetic models in the post-genome era
Embryonic Stem Cell-Specific MicroRNAs
Merging two gene-expression studies via cross-platform normalization
The phenomenon of blogs and theoretical model of blog use in educational contexts
De Novo Computational Design of Retro-Aldol Enzymes
'Entering the blogosphere': some strategies for using blogs in social research
The application of molecular genetic approaches to the study of human evolution.
Dynamic Regulation of Nucleosome Positioning in the Human Genome
MonoSLAM: Real-Time Single Camera SLAM
Antisocial Punishment Across Societies
Beyond the session timeout: automatic hierarchical segmentation of search topics in query logs
SOCIAL CONSTRUCTIVIST PERSPECTIVES ON TEACHING AND LEARNING
Ã¢Â€ÂœVygotskyÃ¢Â€Â™s Neglected LegacyÃ¢Â€Â: Cultural-Historical Activity Theory
Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE)
Innovation as Co-Evolution of Scientific and Technological Networks: Exploring Tissue Engineering
Localization of Knowledge and the Mobility of Engineers in Regional Networks
Climate change and human health: present and future risks
Physics, Topology, Logic and Computation: A Rosetta Stone
Simulating DNA coding sequence evolution with EvolveAGene 3
Bridging the Gap Between Folksonomies and the Semantic Web: An Experience Report
MiSearch adaptive pubMed search tool
Similarity measures for tracking information flow
The structure of protein evolution and the evolution of protein structure
MECHANISMS OF MAINTENANCE OF SPECIES DIVERSITY
I tube, you tube, everybody tubes: analyzing the world's largest user generated content video system
Analysis of the residue-residue coevolution network and the functionally important residues in proteins
A holistic lexicon-based approach to opinion mining
Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density
Monitoring and estimating tropical forest carbon stocks: making REDD a reality
Measuring carbon in forests: current status and future challenges
How Long Will It Take to Fix This Bug?
Microbial community gene expression in ocean surface waters
Phase-of-Firing Coding of Natural Visual Stimuli in Primary Visual Cortex
Network properties of genes harboring inherited disease mutations
Mapping translocation breakpoints by next-generation sequencing
A central circuit of the mind
An evaluation of adaptive filtering in the context of realistic task-based information exploration
Genetic basis of fitness differences in natural populations
Adaptive coding of visual information in neural populations.
Electronic delivery of lectures in the university environment: An empirical comparison of three delivery styles
The correlates of the digital divide and their impact on college student learning
An emerging view of scientific collaboration: Scientistsâ€™ perspectives on collaboration and factors that impact collaboration
Quantifying the Relationships among Drug Classes
The Large-Display User Experience
Defining genetic interaction
Computational modeling of post-transcriptional gene regulation by microRNAs.
Functional metagenomic profiling of nine biomes.
{Latent concept expansion using markov random fields}
A machine-learning approach to combined evidence validation of genome assemblies
Using Engineered Scaffold Interactions to Reshape MAP Kinase Pathway Signaling Dynamics
Epigenetics in cancer.
Machine learning methods for predictive proteomics.
Direct Visualization of Horizontal Gene Transfer
Synaptic theory of working memory.
Neural representation of spectral and temporal information in speech.
The Taverna Interaction Service: enabling manual interaction in workflows.
Chemically Derived, Ultrasmooth Graphene Nanoribbon Semiconductors
From Classical Genetics to Quantitative Genetics to Systems Biology: Modeling Epistasis
Reassessing a sparse energetic network within a single protein domain
Genome assembly forensics: finding the elusive mis-assembly
A Lightweight Approach to Semantic Annotation of Research Papers
Metabolic Complementarity and Genomics of the Dual Bacterial Symbiosis of Sharpshooters
{A}daptive {R}adiation from {R}esource {C}ompetition in {D}igital {O}rganisms
Analyzing protein interaction networks using structural information.
Neural correlates of perceptual learning in a sensory-motor, but not a sensory, cortical area
De novo bacterial genome sequencing: Millions of very short reads assembled on a desktop computer
ALLPATHS: De novo assembly of whole-genome shotgun microreads
Genetics of gene expression and its effect on disease
Variations in DNA elucidate molecular networks that cause disease.
Gene3D: comprehensive structural and functional annotation of genomes.
Crystal structure of rhodopsin: A G protein-coupled receptor.
Comparing tagging vocabularies among four enterprise tag-based services
Improving database performance on simultaneous multithreading processors
Approaches to comparative sequence analysis: towards a functional view of vertebrate genomes.
Beyond basic faceted search
Evolution of microRNAs and their targets: Are all microRNAs biologically relevant?
Comparing whole genomes using DNA microarrays
Heritability in the genomics era â€” concepts and misconceptions
Winners donâ€™t punish
Towards fault-tolerant quantum computing with trapped ions
Fitting a Geometric Graph to a Protein-Protein Interaction Network.
Learning from mistakes: a comprehensive study on real world concurrency bug characteristics
Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes
Noise in the nervous system
Genetic Dissection of Neural Circuits
Transcriptional control of noise in gene expression
The Semantic Web in Action
Place cells, grid cells, and the brain's spatial representation system.
An Extended Transcriptional Network for Pluripotency of Embryonic Stem Cells
Information behaviour of the researcher of the future
Spending money on others promotes happiness.
Kemp elimination catalysts by computational enzyme design.
Unequal group variances in microarray data analyses
CompostBin: A DNA composition-based algorithm for binning environmental shotgun reads
Combining statistical alignment and phylogenetic footprinting to detect regulatory elements.
Detecting the overlapping and hierarchical community structure in complex networks
The R Book
Archives, Records, and Power: From (Postmodern) Theory to (Archival) Performance
Predicting biological networks from genomic data.
NetworKIN: a resource for exploring cellular phosphorylation networks.
Neuronal selectivity and local map structure in visual cortex.
Semantic Web for the Working Ontologist: Effective Modeling in RDFS and OWL
Toward a census of bacteria in soil.
The role of disorder in interaction networks: a structural analysis.
Synonym set extraction from the biomedical literature by lexical pattern discovery
State of the nation in data integration for bioinformatics
From the Cover: Consistent blind protein structure generation from NMR chemical shift data
GORouter: an RDF model for providing semantic query and inference services for Gene Ontology and its associations.
Allostery: absence of a change in shape does not imply that allostery is not at play.
Tag-based Social Interest Discovery
Exploring Social Annotations for Information Retrieval
Integrative analysis reveals the direct and indirect interactions between DNA copy number aberrations and gene expression changes.
Linear Models with R
Pathway-{B}ased {A}pproaches for {A}nalysis of {G}enomewide {A}ssociation {S}tudies.
Learning multiple layers of representation
Organizing Knowledge
OpenMS - an open-source software framework for mass spectrometry.
Making Qualitative Research Reports Less Boring: The Techniques of Writing Creative Nonfiction
Pleiotropic scaling of gene effects and the â€˜cost of complexityâ€™
Compartmentalized dendritic plasticity and input feature storage in neurons
The liver pharmacological and xenobiotic gene response repertoire
Using ESTs for phylogenomics: can one accurately infer a phylogenetic tree from a gappy alignment?
MicroRNAs accurately identify cancer tissue origin
Nutritional Control of Reproductive Status in Honeybees via DNA Methylation
Stochastic switching as a survival strategy in fluctuating environments.
Evolutionary plasticity of genetic interaction networks
Predictably Irrational: The Hidden Forces That Shape Our Decisions
Gene regulation in the third dimension
Biomolecular simulations of membranes: Physical properties from different force fields
Predicting cancer involvement of genes from heterogeneous data
Coloured Petri Nets and CPN Tools for modelling and validation of concurrent systems
Rule Learning by Rats
Rare Structural Variants Disrupt Multiple Genes in Neurodevelopmental Pathways in Schizophrenia
Online social networking issues within academia and pharmacy education.
Gene Regulation by Transcription Factors and MicroRNAs
Multilevel Regulation of Gene Expression by MicroRNAs
Systematic identification of mammalian regulatory motifs' target genes and functions
Evolution of eukaryotic transcription circuits.
Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing
Discovery of biological networks from diverse functional genomic data.
Global Chromatin Domain Organization of the Drosophila Genome
How to Interpret a Genome-wide Association Study
The Landscape of Human Proteins Interacting with Viruses and Other Pathogens
A suite of Perl modules for handling microarray data
Walking the Interactome for Prioritization of Candidate Disease Genes
It's Not Who You Know, It's How You Know Them: Who Exchanges What With Whom
Three-color alternating-laser excitation of single molecules: monitoring multiple interactions and distances.
Transposable elements and the evolution of regulatory networks
Spike train decoding without spike sorting.
Bayes in the sky: Bayesian inference and model selection in cosmology
Relevance: A review of the literature and a framework for thinking on the notion in information science. Part {II}: nature and manifestations of relevance
Effects of Diffusion on Free Precession in Nuclear Magnetic Resonance Experiments
Robust dynamic classes revealed by measuring the response function of a social system
Oxytocin Increases Generosity in Humans
Protein networks in disease.
Velvet: algorithms for de novo short read assembly using de Bruijn graphs.
From time series to complex networks: The visibility graph
Recent advances in implicit solvent-based methods for biomolecular simulations.
Structural diversity of G protein-coupled receptors and significance for drug discovery
Robust Face Recognition via Sparse Representation
Four formal(izable) theories of the firm?
iPath: interactive exploration of biochemical pathways and networks.
From genetic privacy to open consent.
The regulatory activity of microRNA* species has substantial influence on microRNA and 3' UTR evolution.
Genetic variation in human NPY expression affects stress response and emotion
Enabling personalized cancer medicine through analysis of gene-expression patterns.
Applying the bootstrap to the multivariate case: Bootstrap component/factor analysis
Disentangling interactions between adaptive divergence and gene flow when ecology drives diversification
Stochasticity and cell fate.
Bacteria Subsisting on Antibiotics
Some(What) Grand Challenges for Information Retrieval
Web search personalization with ontological user profiles
Determining the informational, navigational, and transactional intent of Web queries
Single-Molecule DNA Sequencing of a Viral Genome
Viral population estimation using pyrosequencing
A Perspective on the Future of Middleware-based Software Engineering
A walk-through of the yeast mating pheromone response pathway
Generic Programming: An Introduction
Culture and the Evolutionary Process
I, Avatar: The Culture and Consequences of Having a Second Life (New Riders)
Discovering microRNAs from deep sequencing data using miRDeep.
Preferential behavior in online groups
Darwinian Evolution on a Chip
Global and regional climate changes due to black carbon
Introducing DOTUR, a Computer Program for Defining Operational Taxonomic Units and Estimating Species Richness
An ontology-driven semantic mashup of gene and biological pathway information: application to the domain of nicotine dependence.
annot8r: GO, EC and KEGG annotation of EST datasets
Entrainment of Neuronal Oscillations as a Mechanism of Attentional Selection
Understanding the Efficiency of Social Tagging Systems using Information Theory
Identity management: multiple presentations of self in {Facebook}
Control of protein synthesis and mRNA degradation by microRNAs
Coarse-Grained MD Simulations of Membrane Protein-Bilayer Self-Assembly
Learning as a Service: A Web-Based Learning Framework for Communities of Professionals on the Web 2.0
Gene identification and protein classification in microbial metagenomic sequence data via incremental clustering
The future of the Internet and how to stop it
Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes.
Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes.
Convergence of Campylobacter Species: Implications for Bacterial Evolution
MedEvi: Retrieving textual evidence of relations between biomedical concepts from Medline
MMG: a probabilistic tool to identify submodules of metabolic pathways
Publication Manual of the {A}merican {P}sychological {A}ssociation
{Anterior cingulate cortex, error detection, and the online monitoring of performance.}
Functional Coactivation Map of the Human Brain
Using support vector machine combined with auto covariance to predict protein-protein interactions from protein sequences.
Biodiesel from microalgae
Compressed Indexing and Local Alignment of DNA.
Sozialpsychologie des Internet. Die Bedeutung des Internet fÃ¼r Kommunikationsprozesse, IdentitÃ¤ten, soziale Beziehungen und Gruppen.
Calorie Restriction Promotes Mammalian Cell Survival by Inducing the SIRT1 Deacetylase
Normalizing biomedical terms by minimizing ambiguity and variability.
Natural Language Processing in aid of FlyBase curators
Gene&#8211;Environment Interaction in Yeast Gene Expression
Unconscious determinants of free decisions in the human brain
A map of human protein interactions derived from co-expression of human mRNAs and their orthologs.
URL decay in MEDLINE--a 4-year follow-up study
Terminologies for text-mining; an experiment in the lipoprotein metabolism domain
Semantic concept-based query expansion and re-ranking for multimedia retrieval
A Chado case study: an ontology-based modular schema for representing genome-associated biological information
The MARTINI Coarse-Grained Force Field: Extension to Proteins
A synthetic Escherichia coli predator-prey ecosystem
Web 2.0: A Strategy Guide: Business thinking and strategies behind successful Web 2.0 implementations
The complete genome of an individual by massively parallel DNA sequencing
Evolvability and hierarchy in rewired bacterial gene networks.
Nucleosome organization in the Drosophila genome.
Understanding Uncertainty
Free choice activates a decision circuit between frontal and parietal cortex
Anderson localization of a non-interacting Bose-Einstein condensate
Why Web 2.0 is Good for Learning and for Research: Principles and Prototypes
Knowledge Sharing and Yahoo Answers: Everyone Knows Something
Cell-to-Cell Stochastic Variation in Gene Expression Is a Complex Genetic Trait
Transition networks for modeling the kinetics of conformational change in macromolecules
Comparison of SCImago journal rank indicator with journal impact factor
Food-Miles and the Relative Climate Impacts of Food Choices in the United States
A data-oriented survey of context models
Surviving Sepsis Campaign: international guidelines for management of severe sepsis and septic shock: 2008.
Reality-based interaction: a framework for post-WIMP interfaces
Crowdsourcing user studies with Mechanical Turk
What drives content tagging: the case of photos on Flickr
Exploring the role of the reader in the activity of blogging
Heuristic evaluation for games: usability principles for video game design
Transcription factor and microRNA motif discovery: The Amadeus platform and a compendium of metazoan target sets
The Chemical Genomic Portrait of Yeast: Uncovering a Phenotype for All Genes
Mashups: who? what? why?
The Global Circulation of Seasonal Influenza A (H3N2) Viruses
Genome-wide association studies for complex traits: consensus, uncertainty and challenges.
Knowledge Transfer in Organizations: Learning from the Experience of Others
Investigations of Oligonucleotide Usage Variance Within and Between Prokaryotes
Uncovering signal transduction networks from high-throughput data by integer linear programming.
Defining functional areas in individual human brains using resting functional connectivity MRI
Resting-state functional connectivity reflects structural connectivity in the default mode network.
Predicting Co-Complexed Protein Pairs from Heterogeneous Data
Functional Maps of Protein Complexes from Quantitative Genetic Interaction Data
BAC TransgeneOmics: a high-throughput method for exploration of protein function in mammals.
Connectivism: A Learning Theory for the Digital Age
Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data.
Comparative proteogenomics: Combining mass spectrometry and comparative genomics to analyze multiple genomes
Growth in cities
Finding high-quality content in social media
Discovering authorities in question answer communities by using link analysis
Statistical Properties of Community Structure in Large Social and Information Networks
Yes, There is a Correlation - From Social Networks to Personal Behavior on the Web
Flickr Tag Recommendation based on Collective Knowledge
A note on the false discovery rate and inconsistent comparisons between experiments.
Extraction of semantic biomedical relations from text using conditional random fields
How to succeed in science: a concise guide for young biomedical scientists. Part I: taking the plunge.
miRiad roles for the miR-17-92 cluster in development and disease.
Fast Parallel Algorithms for Short-Range Molecular Dynamics
Eukaryotic transcription factor binding sitesÃ¢Â€Â”modeling and integrative search methods
Protein structure databases with new web services for structural biology and biomedical research.
Mountain pine beetle and forest carbon feedback to climate change
Conserved co-expression for candidate disease gene prioritization
From Genotype to Phenotype: Systems Biology Meets Natural Variation
Teacher Learning: the Key to Educational Reform
A pyrosequencing-tailored nucleotide barcode design unveils opportunities for large-scale sample multiplexing.
Genomic Plasticity and the Diversity of Polyploid Plants
Predicting the location and number of faults in large software systems
Large scale analysis of web revisitation patterns
A global pathway crosstalk network
Genome-Scale Proteomics Reveals Arabidopsis thaliana Gene Models and Proteome Dynamics
Current Methods in Medical Image Segmentation
A systemic and cognitive view on collaborative knowledge building with wikis
Applying Common Identity and Bond Theory to Design of Online Communities
DarwinÃ¢â‚¬â„¢s mistake: Explaining the discontinuity between human and nonhuman minds
Google Scholar revisited
Boosting Algorithms: Regularization, Prediction and Model Fitting
PageRank for Product Image Search
Implementing arithmetic and other analytic operations by transcriptional regulation.
Interpreting principal component analyses of spatial population genetic variation
Exposing the fitness contribution of duplicated genes.
Software Evolution
An embryonic stem cell-like gene expression signature in poorly differentiated aggressive human tumors.
Lifting the veil: improving accountability and social transparency in Wikipedia with wikidashboard
Binning sequences using very sparse labels within a metagenome
Gene prediction in metagenomic fragments: A large scale machine learning approach
{SPEA2}: Improving the {S}trength {P}areto {E}volutionary {A}lgorithm
High-throughput functional annotation and data mining with the Blast2GO suite
Social Exchange Theory: An Interdisciplinary Review
Calculation of proteinÃ¢Â€Â“ligand binding free energy by using a polarizable potential
Improving fluid intelligence with training on working memory
Information quality work organization in Wikipedia
The distinct modes of vision offered by feedforward and recurrent processing
Evaluation campaigns and TRECVid
Mixed-effects modeling with crossed random effects for subjects and items
High-throughput kinase profiling as a platform for drug discovery
GENOMEPOP: a program to simulate genomes in populations.
Introduction to S-Duality in N=2 Supersymmetric Gauge Theory. (A pedagogical review of the work of Seiberg and Witten)
Strategic Management of Technology and Innovation
Hierarchical structure and the prediction of missing links in networks.
The missing memristor found
Mapping and sequencing of structural variation from eight human genomes.
Regulation of DNA double-strand break repair pathway choice
Two strategies for gene regulation by promoter nucleosomes
Quality scores and SNP detection in sequencing-by-synthesis systems
Biodiversity informatics: the challenge of linking data and the role of shared identifiers
The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing
APE: Analyses of Phylogenetics and Evolution in R language
Hierarchical models of behavior and prefrontal function.
Ontology-Based User Modeling for Knowledge Management Systems
A General Model for Food Web Structure
Tag-aware recommender systems by fusion of collaborative filtering algorithms
Does the chimpanzee have a theory of mind? 30 years later
Extending Genomics to Natural Communities and Ecosystems
Usability evaluation considered harmful (some of the time)
A survey of collaborative web search practices
Idea navigation: structured browsing for unstructured text
"""Security, Territory, Population:"" Lectures at the College De France. 1977-1978"
Transient Cognitive Dynamics, Metastability, and Decision Making
VISTA: computational tools for comparative genomics
BUBBLE Rap: Social-based Forwarding in Delay Tolerant Networks
Bayes and Empirical Bayes Methods for Data Analysis
E-imci: improving pediatric health care in low-income countries
Engineering BioBrick vectors from BioBrick parts
Mapping the Genetic Architecture of Gene Expression in Human Liver
Evolution and dynamics of protein interactions and networks
Computational intelligence approaches for pattern discovery in biological systems.
A space-efficient and accurate method for mapping and aligning cDNA sequences onto genomic sequence
Not quite the average: An empirical study of Web use
Network-based global inference of human disease genes
Bayesian biclustering of gene expression data.
Contextual correlates of semantic similarity
Institutional Repositories: Faculty Deposits, Marketing, and the Reform of Scholarly Communication
The evolution of modularity in bacterial metabolic networks
An efficient method to identify differentially expressed genes in microarray experiments.
GeneTrackÃ¢Â€Â”a genomic data processing and visualization framework
GPU Computing
From the Cover: Extreme polyploidy in a large bacterium
Genome analysis of the platypus reveals unique signatures of evolution
An endogenous small interfering RNA pathway in Drosophila
Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions
Molecular architecture of a miRNA-regulated 3' UTR.
Rate Control for Communication Networks: Shadow Prices, Proportional Fairness and Stability
PaLS: filtering common literature, biological terms and pathway information.
Discovering Sequence Motifs with Arbitrary Insertions and Deletions
Null mutations in human and mouse orthologs frequently result in different phenotypes
DNA methylation landscapes: provocative insights from epigenomics
Predictive behavior within microbial genetic networks.
Phylogenetic classification of short environmental DNA fragments
The minimum information about a genome sequence (MIGS) specification.
VisANT: an integrative framework for networks in systems biology
Gene Set Enrichment in eQTL Data Identifies Novel Annotations and Pathway Regulators
Personalized interactive faceted search
Assessment of disease named entity recognition on a corpus of annotated sentences.
Comparative analysis of five protein-protein interaction corpora
A modular approach for integrative analysis of large-scale gene-expression and drug-response data
{Mobility Support in IPv6}
The McDonald-Kreitman Test and Slightly Deleterious Mutations
Content-Based Music Information Retrieval: Current Directions and Future Challenges
The Impact of Recombination on Nucleotide Substitutions in the Human Genome
Understanding eukaryotic linear motifs and their role in cell signaling and regulation
Gene Ontology annotations: what they mean and where they come from.
RDFScape: Semantic Web meets systems biology.
Pyrosequencing enumerates and contrasts soil microbial diversity
An in vivo map of the yeast protein interactome.
A survey of affect recognition methods: audio, visual and spontaneous expressions
Loss of bacterial diversity during antibiotic treatment of intubated patients colonized with Pseudomonas aeruginosa.
REACH Coarse-Grained Biomolecular Simulation: Transferability between Different Protein Structural Classes
Decorating Master Class
Building Construction Illustrated
Colin Cowie Chic: The Guide to Life As It Should Be
Panama Fever: The Epic Story of One of the Greatest Human Achievements of All Time-- the Building of the Panama Canal
Cliff May and the Modern Ranch House
The Artist's Way
Things I have learned in my life so far
The Principles of Uncertainty
A Photographer's Life: 1990-2005
Ansel Adams: 400 Photographs
Estimating the size of the human interactome
Recursive construction of perfect DNA molecules from imperfect oligonucleotides.
"What medical educators need to know about ""Web 2.0""."
Generating Typed Dependency Parses from Phrase Structure Parses
Organizing and the Process of Sensemaking
Bio2RDF: towards a mashup to build bioinformatics knowledge systems.
{PatMaN: rapid alignment of short sequences to large databases}
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB.
Audition: A Memoir
The Revolution: A Manifesto
Are You There, Vodka? It's Me, Chelsea
Ladies of Liberty CD: The Women Who Shaped Our Nation
A Wolf at the Table: A Memoir of My Father
The Predictably Irrational CD: The Hidden Forces That Shape Our Decisions
The Sales Bible: The Ultimate Sales Resource
The Secret (Unabridged, 4-CD Set)
Good To Great CD
The Whole Truth
Eclipse (The Twilight Saga, Book 3)
Getting to Yes : How to Negotiate Agreement Without Giving in (AUDIO CASSETTE)
FairTax: The Truth: Answering the Critics
The Essays of Warren Buffett : Lessons for Corporate America
The Retirement Savings Time Bomb...and How to Defuse It
Personal Finance for Dummies
Digital Tool CD-ROM to accompany Intermediate Accounting
Smart Women Finish Rich
The Millionaire Next Door
The Secret History of the American Empire: The Truth About Economic Hit Men, Jackals, and How to Change the World
Blackwater: The Rise of the World's Most Powerful Mercenary Army [Revised and Updated]
Goodnight Moon, 60th Anniversary Edition
The Very Hungry Caterpillar (MINIATURE EDITION)
Where the Wild Things Are
Peek-A Who?
Love You Forever
The Giving Tree (Slipcased Mini Edition)
Brown Bear, Brown Bear, What Do You See?
Oh, the Places You'll Go! (Classic Seuss)
His Dark Materials Trade Paper Boxed Set (Golden Compass, Subtle Knife, Amber Spyglass)
The Chronicles of Narnia Box Set: Full-Color Collector's Edition
Read All About It!
Dirt on My Shirt
Alexander and the Terrible, Horrible, No Good, Very Bad Day
Professional ASP.NET 3.5: In C# and VB (Programmer to Programmer)
Dreamweaver CS3: The Missing Manual
Landing Page Optimization: The Definitive Guide to Testing and Tuning for Conversions
Adobe Flex 3: Training from the Source
PHP and MySQL for Dynamic Web Sites: Visual QuickPro Guide (2nd Edition) (Visual QuickPro Guide)
Professional SharePoint 2007 Development (Programmer to Programmer)
Mac OS X Leopard: The Missing Manual
Cocoa(R) Programming for Mac(R) OS X (3rd Edition)
iPhoto '08: The Missing Manual
The Macintosh iLife 08
iMovie '08 & iDVD: The Missing Manual
Apple Pro Training Series: Final Cut Express 4 (Apple Pro Training)
Apple Pro Training Series: Final Cut Pro 6 (Apple Pro Training)
Hello, Cupcake!: Irresistibly Playful Creations Anyone Can Make
Martha Stewart's Cookies: The Very Best Treats to Bake and to Share (Martha Stewart Living Magazine)
On Food And Cooking
Artisan Bread in Five Minutes a Day: The Discovery That Revolutionizes Home Baking
Nourishing Traditions:  The Cookbook that Challenges Politically Correct Nutrition and the Diet Dictocrats
Weight Watchers New Complete Cookbook (Weight Watchers)
Kitchen Confidential: Adventures in the Culinary Underbelly
Super Baby Food
Charcuterie: The Craft of Salting, Smoking, and Curing
Preserving Food without Freezing or Canning: Traditional Techniques Using Salt, Oil, Sugar, Alcohol, Vinegar, Drying, Cold Storage, and Lactic Fermentation
Trail Food: Drying and Cooking Food for Backpacking and Paddling
Mary Bell's Complete Dehydrator Cookbook
How to Dry Foods
The Solar Food Dryer: How to Make and Use Your Own Low-Cost, High Performance, Sun-Powered Food Dehydrator
How Not to Look Old: Fast and Effortless Ways to Look 10 Years Younger, 10 Pounds Lighter, 10 Times Better
The Happiest Baby on the Block: The New Way to Calm Crying and Help Your Newborn Baby Sleep Longer
Tuesdays with Morrie: an old man, a young man, and life's greatest lesson
The Trigger Point Therapy Workbook: Your Self-Treatment Guide for Pain Relief, Second Edition
The Age of Miracles: Embracing the New Midlife
Younger Next Year: Live Strong, Fit, and Sexyâ€”Until You're 80 and Beyond
Pain Free: A Revolutionary Method for Stopping Chronic Pain
Practicing the Power of Now: Essential Teachings, Meditations, and Exercises from The Power of Now
You Can Heal Your Life (Gift Edition)
DailyOM: Inspirational Thoughts for a Happy, Healthy, and Fulfilling Day
Full Catastrophe Living
The Divine Matrix: Bridging Time, Space, Miracles, and Belief
Healing Back Pain: The Mind-Body Connection
The Fat Flush Plan
Towards Identity Anonymization on Graphs
Using OWL to model biological knowledge
Reward-Dependent Modulation of Neuronal Activity in the Primate Dorsal Raphe Nucleus
Discerning static and causal interactions in genome-wide reverse engineering problems.
Use and misuse of the gene ontology annotations
Multiple protein sequence alignment
The biological principles of swarm intelligence
The Design and Realisation of the myExperiment Virtual Research Environment for Social Sharing of Workflows
Semantic Analysis of Tag Similarity Measures in Collaborative Tagging Systems
Attributing physical and biological impacts to anthropogenic climate change
A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning.
Hippocampus-independent phase precession in entorhinal grid cells
Phylogeny.fr: robust phylogenetic analysis for the non-specialist
Finding the right facts in the crowd: factoid question answering over social media
Dissecting protein-RNA recognition sites
Widespread Translational Inhibition by Plant miRNAs and siRNAs
Prediction of human disease genes by human-mouse conserved coexpression analysis.
RESTful Web Services vs. Big Web Services: Making the Right Architectural Decision
PolySearch: a web-based text mining system for extracting relationships between human diseases, genes, mutations, drugs and metabolites.
Constructing Grounded Theory: A Practical Guide through Qualitative Analysis (Introducing Qualitative Methods series)
A HapMap harvest of insights into the genetics of common disease.
Microbiology in the post-genomic era
Microbial diversity and the genetic nature of microbial species.
Linkage disequilibrium â€” understanding the evolutionary past and mapping the medical future
Bonk: The Curious Coupling of Science and Sex
The China Study: The Most Comprehensive Study of Nutrition Ever Conducted and the Startling Implications for Diet, Weight Loss and Long-Term Health
Codependent No More
From Belly Fat to Belly Flat: How Your Hormones Are Adding Inches to Your Waist and Subtracting Years from Your Life -- the Medically Proven Way to Reset Your Metabolism and Reshape Your Body
Taking Charge of Your Fertility, 10th Anniversary Edition: The Definitive Guide to Natural Birth Control, Pregnancy Achievement, and Reproductive Health
Mayo Clinic Guide to a Healthy Pregnancy
Spark: The Revolutionary New Science of Exercise and the Brain
Tarascon Pocket Pharmacopoeia 2008 Classic Shirt-pocket Edition (Tarascon Pocket Pharmacopoeia) (Tarascon Pocket Pharmacopoeia)
Saunders Comprehensive Review for the NCLEX-RNÂ®  Examination (Saunders Comprehensive Review for Nclex-Rn)
Strength Training Anatomy
Eat to Live: The Revolutionary Formula for Fast and Sustained Weight Loss
Dynamic Analysis of Integrated Signaling, Metabolic, and Regulatory Networks
Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution
How to succeed in science: a concise guide for young biomedical scientists. Part II: making discoveries.
Topigraphy: visualization for large-scale tag clouds
Twenty Things Adopted Kids Wish Their Adoptive Parents Knew
Attaching in Adoption: Practical Tools for Today's Parents
Adoption Parenting: Creating a Toolbox, Building Connections
Raising Adopted Children, Revised Edition: Practical Reassuring Advice for Every Adoptive Parent
Talking with Young Children about Adoption
The Gift of Years: Growing Older Gracefully
The 36-Hour Day: A Family Guide to Caring for People with Alzheimer Disease, Other Dementias, and Memory Loss in Later Life (4th Edition) (A Johns Hopkins Press Health Book)
I Still Have It . . . I Just Can't Remember Where I Put It: Confessions of a Fiftysomething
How to Retire Happy, Wild, and Free: Retirement Wisdom That You Won't Get from Your Financial Advisor
Nextville: Amazing Places to Live the Rest of Your Life
The Thing About Life Is That One Day You'll Be Dead
Healthy Aging: A Lifelong Guide to Your Well-Being
A New Earth: Awakening to Your Life's Purpose (Oprah's Book Club, Selection 61)
Power of Now 2009 Wall Calendar
Ghosts Among Us: Uncovering the Truth About the Other Side
The Five Love Languages Audio Cassette
How to Win Friends & Influence People
Stillness Speaks
Getting the Love You Want, 20th Anniversary Edition: A Guide for Couples
Change Your Brain, Change Your Life: The Breakthrough Program for Conquering Anxiety, Depression, Obsessiveness, Anger, and Impulsiveness
Now, Discover Your Strengths
PLANT ECOLOGICAL STRATEGIES: Some Leading Dimensions of Variation Between Species
Social tagging roles: publishers, evangelists, leaders
Assembly reconciliation
Who Moved My Cheese? An Amazing Way to Deal with Change in Your Work and in Your Life
What Got You Here Won't Get You There: How Successful People Become Even More Successful
The Four Agreements: A Practical Guide to Personal Freedom
The Spirit Catches You and You Fall Down
Verbal reports as data.
Fourfold Faster Rate of Genome Rearrangement in Nematodes Than in Drosophila
HCLS 2.0/3.0: Health care and life sciences data mashup using Web 2.0/3.0
The neural systems that mediate human perceptual decision making
Sloppiness, robustness, and evolvability in systems biology
{Income and Democracy}
{Human Computing and Machine Understanding of Human Behavior: A Survey}
The Pyramid Match Kernel: Efficient Learning with Sets of Features
Multiscale Simulation of Soft Matter: From Scale Bridging to Adaptive Resolution
Synchronization in complex networks
Membrane proteins: molecular dynamics simulations.
The tragedy of the uncommon: understanding limitations in the analysis of microbial diversity.
Transcriptome-wide noise controls lineage choice in mammalian progenitor cells
MicroRNA-encoding long non-coding RNAs
Composite Medium with Simultaneously Negative Permeability and Permittivity
The Sorcerer II Global Ocean Sampling Expedition: Metagenomic Characterization of Viruses within Aquatic Microbial Samples
Canonical Correlation Analysis: An Overview with Application to Learning Methods
Network â€˜Small-World-Nessâ€™: A Quantitative Method for Determining Canonical Network Equivalence
Humanâ€“Robot Interaction: A Survey
RSAT: regulatory sequence analysis tools.
Microbial Ecology of Ocean Biogeochemistry: A Community Perspective
Microbial Biogeography: From Taxonomy to Traits
The Microbial Engines That Drive Earth's Biogeochemical Cycles
Unbiased Whole-Genome Amplification Directly From Clinical Samples
Cascading Behavior in Large Blog Graphs
Rethinking University Teaching: A Conversational Framework for the Effective Use of Learning Technologies
Low-Level Information and High-Level Perception: The Case of Speech in Noise.
Revisiting the Saccharomyces cerevisiae predicted ORFeome.
BrowseRank: Letting Web Users Vote for Page Importance
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Cross-species de novo identification of cis-regulatory modules with GibbsModule: application to gene regulation in embryonic stem cells
Social Uses of Personal Health Information Within PatientsLikeMe, an Online Patient Community: What Can Happen When Patients Have Access to One Another's Data
Spherical nanosized focal spot unravels the interior of cells
Macromolecular crowding and confinement: biochemical, biophysical, and potential physiological consequences.
Web 2.0 and social software: the medical student way of e-learning.
DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment.
A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
Calling on a million minds for community annotation in WikiProteins.
Significance of Electromagnetic Potentials in the Quantum Theory
Biosensing with plasmonic nanosensors
A Robust Framework for Detecting Structural Variations in a Genome
Evaluation of Paired-End Sequencing Strategies for Detection of Genome Rearrangements in Cancer
Oceanic Forcing of Sahel Rainfall on Interannual to Interdecadal Time Scales
Some Simple Economics of Open Source
Single-Molecule Approach to Molecular Biology in Living Bacterial Cells
Efficient Computation of Sum-products on GPUs Through Software-Managed Cache
Optimization in computational systems biology
Ott: Effective Tool Support for the Working Semanticist
Cortical control of a prosthetic arm for self-feeding
A phase diagram for jammed matter
Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing
Common and rare variants in multifactorial susceptibility to common diseases.
Automatically refining the wikipedia infobox ontology
BatchPrimer3: a high throughput web application for PCR and sequencing primer design.
Advanced sequencing technologies: methods and goals.
A practical guide to single-molecule FRET
Predicting human brain activity associated with the meanings of nouns.
Do-it-yourself guide: how to use the modern single-molecule toolkit
Single-molecule force spectroscopy: optical tweezers, magnetic tweezers and atomic force microscopy
Automatic Extraction of Useful Facet Hierarchies from Text Databases
iTools: A Framework for Classification, Categorization and Integration of Computational Biology Resources
Log or linear? Distinct intuitions of the number scale in Western and Amazonian indigene cultures.
Assessing the Evolutionary Impact of Amino Acid Mutations in the Human Genome
A Probabilistic Model of Local Sequence Alignment That Simplifies Statistical Significance Estimation
Why Are Computational Neuroscience and Systems Biology So Separate?
What is a gene? An updated operational definition
BioLit: integrating biological literature with databases
Transformation of the Nitrogen Cycle: Recent Trends, Questions, and Potential Solutions
New Knowledge from Old Data: The Role of Standards in the Sharing and Reuse of Ecological Data
Handbook of Mobile Communication Studies
The structure of scientific collaboration networks in &lt;i&gt;Scientometrics&lt;/i&gt;
How Do Users Find Things with PubMed? Towards Automatic Utility Evaluation with User Simulations
Stem cell transcriptome profiling via massive-scale mRNA sequencing
Mapping and quantifying mammalian transcriptomes by RNA-Seq
Coevolution at protein complex interfaces can be detected by the complementarity trace with important impact for predictive docking
The current excitement about copy-number variation: how it relates to gene duplications and protein families.
InteroPORC: automated inference of highly conserved protein interaction networks.
Technological paradigms: past, present and future
The gene regulatory logic of transcription factor evolution
A computational screen for mouse signaling pathways targeted by microRNA clusters.
Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis
The new paradigm of flow cell sequencing
Internet-based tools for communication and collaboration in chemistry
Object-based auditory and visual attention
Looking at, looking up or keeping up with people?: motives and use of facebook
Activity-based serendipitous recommendations with the Magitti mobile leisure guide
Massive Horizontal Gene Transfer in Bdelloid Rotifers
Beyond sliding windows: object localization by efficient subwindow search
From the Cover: A latitudinal diversity gradient in planktonic marine bacteria
MicroRNA regulation of messenger-like noncoding RNAs: a network of mutual microRNA control
Failed technology futures: pitfalls and lessons from a historical survey
The art and design of genetic screens: RNA interference
Forms of Talk
Understanding individual human mobility patterns
NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways
Large Scale Multiple Kernel Learning
Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli
SearchTogether: an interface for collaborative web search
Designing for the Social Web
PageRank without hyperlinks: reranking with PubMed related article networks for biomedical text retrieval.
A diary study of mobile information needs
The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli
CSMET: comparative genomic motif detection via multi-resolution phylogenetic shadowing.
A Discriminatively Trained, Multiscale, Deformable Part Model
Context-Specific Metabolic Networks Are Consistent with Experiments
The InterPro Database, 2003 brings increased coverage and new features
Introduction: Epistemic Communities and International Policy Coordination
Disrupting Class: How Disruptive Innovation Will Change the Way the World Learns
Behavior-dependent short-term assembly dynamics in the medial prefrontal cortex.
The evolutionary ecology of metacommunities
k-means++: the advantages of careful seeding
The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata.
Open Business Models: How to Thrive in the New Innovation Landscape
Evolutionary expansion and anatomical specialization of synapse proteome complexity.
The Last Tycoons: The Secret History of Lazard FrÃ¨res & Co.
Microarray-based classification and clinical predictors: on combined classifiers and additional predictive value.
TiGER: a database for tissue-specific gene expression and regulation.
Effects of intensive glucose lowering in type 2 diabetes.
Intensive Blood Glucose Control and Vascular Outcomes in Patients with Type 2 Diabetes
Associating transcription factor-binding site motifs with target GO terms and target genes
Long-term working memory
RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays.
What we can do and what we cannot do with fMRI
SMAD proteins control DROSHA-mediated microRNA maturation
Mitogen-Activated Protein Kinase Pathways Mediated by ERK, JNK, and p38 Protein Kinases
Discovering functional interaction patterns in protein-protein interaction networks
Serotonin modulates behavioral reactions to unfairness.
Inferring MicroRNA Activities by Combining Gene Expression with MicroRNA Target Prediction
Disk-directed I/O for MIMD multiprocessors
Does Good Science Lead to Valuable Knowledge? Biotechnology Firms and the Evolutionary Logic of Citation Patterns
Reducing Greenhouse Gas Emissions from Deforestation and Forest Degradation: Global Land-Use Implications
Rewiring the Specificity of Two-Component Signal Transduction Systems
Global identification of microRNAâ€“target RNA pairs by parallel analysis of RNA ends
Biochemistry. How do proteins interact?
Recognition Dynamics Up to Microseconds Revealed from an RDC-Derived Ubiquitin Ensemble in Solution
A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome.
Anni 2.0: a multipurpose text-mining tool for the life sciences.
Research Methods in Education
Hyper-Heuristics: An Emerging Direction in Modern Search Technology
An Introduction To Compressive Sampling
Forests and Climate Change: Forcings, Feedbacks, and the Climate Benefits of Forests
Scheduling I/O in virtual machine monitors
Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells
Exploring the structure and function paradigm
An Improved General Amino Acid Replacement Matrix
Digital Preservation: A Time Bomb for Digital Libraries
Transportable Information Agents
Two Bits: The Cultural Significance of Free Software
EagleView: a genome assembly viewer for next-generation sequencing technologies.
Characterizing Privacy in Online Social Networks
In Defense of Nearest-Neighbor Based Image Classification
Structural specificity in coiled-coil interactions
Harvana: harvesting community tags to enrich collection metadata
User loyalty and online communities: why members of online communities are not faithful
Progress and challenges in protein structure prediction
Dynamics and design principles of a basic regulatory architecture controlling metabolic pathways.
Pairwise Document Similarity in Large Collections with MapReduce
The Learning Sciences, Technology and Designs for Educational Systems: Some Thoughts About Change
IEEE 802.11p: Towards an International Standard for Wireless Access in Vehicular Environments
Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks
The amphioxus genome and the evolution of the chordate karyotype
Making Sense of the Legendre Transform
Inferring causal relationships among different histone modifications and gene expression
A basis for information retrieval in context
Protein model refinement using an optimized physics-based all-atom force field
Brain Circuits for the Internal Monitoring of Movements*
Assembly reflects evolution of protein complexes.
Single-Cycle Nonlinear Optics
Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis
"Policies Designed for Self-Interested Citizens May Undermine ""The Moral Sentiments"": Evidence from Economic Experiments"
Social network(ing) sitesâ€¦revisiting the story so far: A response to danah boyd & Nicole Ellison
Yago: A Large Ontology From Wikipedia and WordNet
Tuned Responses of Astrocytes and Their Influence on Hemodynamic Signals in the Visual Cortex
Natural Selection Shapes Genome-Wide Patterns of Copy-Number Polymorphism in Drosophila melanogaster
Evolution of mammals and their gut microbes.
Proliferating Cells Express mRNAs with Shortened 3' Untranslated Regions and Fewer MicroRNA Target Sites
Experimentation in Software Engineering: An Introduction
GMODWeb: a web framework for the generic model organism database
Population genomics of domestic and wild yeasts
Get the most out of your metagenome: computational analysis of environmental sequence data
The Airborne Metagenome in an Indoor Urban Environment
Harvesting with SONAR: the value of aggregating social network information
The Structure of Information Pathways in a Social Communication Network
Don't look now, but we've created a bureaucracy: the nature and roles of policies and rules in wikipedia
Unpacking 'Participation': models, meanings and practices
Fully Distributed EM for Very Large Datasets
Reprogramming a maize plant: Transcriptional and metabolic changes induced by the fungal biotroph Ustilago maydis.
Optimization principles and application performance evaluation of a multithreaded GPU using CUDA
Refinement, Decomposition, and Instantiation of Discrete Models: Application to Event-B
Cloud computing
Taking risky opportunities in youthful content creation: teenagers' use of social networking sites for intimacy, privacy and self-expression
lumi: a pipeline for processing Illumina microarray.
A text-mining perspective on the requirements for electronically annotated abstracts.
An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs)
Variability in fMRI: An Examination of Intersession Differences
Mitochondrial reactive oxygen species-mediated signaling in endothelial cells.
Literature-aided meta-analysis of microarray data: a compendium study on muscle development and disease
Systems biology driven software design for the research enterprise.
The State of the Art in Tag Ontologies: A Semantic Model for Tagging and Folksonomies
Highly sensitive and specific microRNA expression profiling using BeadArray technology.
Increased Taxon Sampling Greatly Reduces Phylogenetic Error
How well does the HoT score reflect sequence alignment accuracy?
Reference scenarios for deforestation and forest degradation in support of REDD: a review of data and methods
GridBatch: Cloud Computing for Large-Scale Data-Intensive Batch Applications
Combinatorial patterns of histone acetylations and methylations in the human genome
A phylogenomic study of birds reveals their evolutionary history.
Escape from adaptive conflict after duplication in an anthocyanin pathway gene
From the first protein structures to our current knowledge of protein folding: delights and scepticisms
The EXACT description of biomedical protocols
The ontology of biological taxa
UCSC genome browser tutorial.
Coevolution of firm absorptive capacity and knowledge environment: organizational forms and combinative capabilities
Building theories from case study research
Technology and institutions: what can research on information technology and research on organizations learn from each other?
A weighted average difference method for detecting differentially expressed genes from microarray data
Optimal pooling for genome re-sequencing with ultra-high-throughput short-read technologies
Virus attenuation by genome-scale changes in codon pair bias.
Predicting functional transcription factor binding through alignment-free and affinity-based analysis of orthologous promoter sequences
Identifying functional modules in protein-protein interaction networks: an integrated exact approach
The beginning of the end for microarrays?
Sepsid even-skipped Enhancers Are Functionally Conserved in Drosophila Despite Lack of Sequence Conservation
Global investigation of proteinÃ¢Â€Â“protein interactions in yeast Saccharomyces cerevisiae using re-occurring short polypeptide sequences
Co-Evolving Motions at Proteinâˆ’Protein Interfaces of Two-Component Signaling Systems Identified by Covariance Analysisâ€ 
ArrayWiki: an enabling technology for sharing public microarray data repositories and meta-analyses.
The mechanism of micro-RNA-mediated translation repression is determined by the promoter of the target gene
A practical scalable distributed B-tree
When Species Meet (Posthumanities)
Next-generation DNA sequencing methods.
Correlating User Profiles from Multiple Folksonomies
Accelerated sequence divergence of conserved genomic elements in Drosophila melanogaster
Digital storytelling: a meaningful technology-integrated approach for engaged student learning
The Systems Biology Research Tool: evolvable open-source software
Evaluation of recommender systems: A new approach
High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome.
Atomic Structure of Graphene on SiO2
Identification of Functional Information Subgraphs in Complex Networks
The multiscale coarse-graining method. I. A rigorous bridge between atomistic and coarse-grained models
The multiscale coarse-graining method. II. Numerical implementation for coarse-grained molecular models
The Courage To Teach: Exploring the Inner Landscape of a Teacher's Life.
A History of Instructional Design and Technology: Part I: A History of Instructional Media.
Predicting protein function from domain content
Amazon S3 for Science Grids: A Viable Solution?
Combining Semantic Web technologies with Multi-Agent Systems for integrated access to biological resources
PuReD-MCL: a graph-based PubMed document clustering methodology
An epistemic dynamic model for tagging systems
Mapping the structural core of human cerebral cortex.
Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya
Identifying gene-disease associations using centrality on a literature mined gene-interaction network.
Extinction risk depends strongly on factors contributing to stochasticity
Systematic conservation planning
The Law of Attraction: The Basics Of The Teachings Of Abraham
Quick & Easy Tsukemono: Japanese Pickling Recipes
Illustrator CS3 for Windows and Macintosh (Visual QuickStart Guide)
The Brain That Changes Itself: Stories of Personal Triumph from the Frontiers of Brain Science (James H. Silberman Books)
Brisingr (Inheritance, Book 3)
Gustave Courbet
Life Sciences and the web: a new era for collaboration.
Column-stores vs. row-stores: how different are they really?
A genome-wide view of the spectrum of spontaneous mutations in yeast
Horizontal gene transfer in eukaryotic evolution.
Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation
NCBI BLAST: a better web interface
Bibliometrics to webometrics
Evaluating different approaches that test whether microbial communities have the same structure
Asymmetric histone modifications between the original and derived loci of human segmental duplications
Phylogenetic Signal in the Eukaryotic Tree of Life
Robust, Tunable Biological Oscillations from Interlinked Positive and Negative Feedback Loops
A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome.
GLOBAL STATE OF BIODIVERSITY AND LOSS
Ontologizer 2.0--a multifunctional tool for GO term enrichment analysis and data exploration
ChemmineR: a compound mining framework for R
Efficient algorithms for accurate hierarchical clustering of huge datasets: tackling the entire protein space
Consensus generation and variant detection by Celera Assembler
Revealing the architecture of gene regulation: the promise of eQTL studies.
The genetics of Caenorhabditis elegans.
Human Computation
Local Function Conservation in Sequence and Structure Space
Fast unfolding of communities in large networks
An Automated Phylogenetic Tree-Based Small Subunit rRNA Taxonomy and Alignment Pipeline (STAP)
Seeded Bayesian Networks: Constructing genetic networks from microarray data
Neuronal Diversity and Temporal Dynamics: The Unity of Hippocampal Circuit Operations
Genome-scale DNA methylation maps of pluripotent and differentiated cells
Video suggestion and discovery for youtube: taking random walks through the view graph
Measuring consciousness: relating behavioural and neurophysiological approaches
Refinement and standardization of synthetic biological parts and devices.
Setting the standard in synthetic biology.
A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis
Towards a Model of Understanding Social Search
Analysis of Homeodomain Specificities Allows the Family-wide Prediction of Preferred Recognition Sites
Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences.
A unified approach to false discovery rate estimation
Global fish production and climate change
Climate Change Vulnerability Assessments: An Evolution of Conceptual Thinking
The ecology of interfaces: riparian zones
Bioimage informatics: a new area of engineering biology.
Social diversity promotes the emergence of cooperation in public goods games
Web 2.0 tools and processes in higher education: quality perspectives
Building Mashups by example
Switching on and off fear by distinct neuronal circuits
Reliability, synchrony and noise.
High-resolution mapping of meiotic crossovers and non-crossovers in yeast
Mapping Anatomical Connectivity Patterns of Human Cerebral Cortex Using In Vivo Diffusion Tensor Imaging Tractography
Drug Target Identification Using Side-Effect Similarity
Methods for the thematic synthesis of qualitative research in systematic reviews
Evo-Devo and an Expanding Evolutionary Synthesis: A Genetic Theory of Morphological Evolution
Identifying Autism Loci and Genes by Tracing Recent Shared Ancestry
The citation advantage of open-access articles
Behavioral states, network states and sensory response variability.
Unraveling Protein Networks with Power Graph Analysis
Evolution of Evolvability in Gene Regulatory Networks
Conditional variable importance for random forests
Personal Health Records: Definitions, Benefits, and Strategies for Overcoming Barriers to Adoption
The art of community detection
Dispersive optomechanics: a membrane inside a cavity
Experience using web services for biological sequence analysis
Internal brain state regulates membrane potential synchrony in barrel cortex of behaving mice.
Acetylcholine contributes through muscarinic receptors to attentional modulation in V1
Generation of Fock states in a superconducting quantum circuit
Learning Classifiers from Only Positive and Unlabeled Data
Cavity Optomechanics with a Bose-Einstein Condensate
Practical Issues in Imputation-Based Association Mapping
The circumplex model of affect: an integrative approach to affective neuroscience, cognitive development, and psychopathology.
Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution.
Networks and epidemic models.
Targeted Development of Registries of Biological Parts
The Evolution and Distribution of Species Body Size
Electronic Publication and the Narrowing of Science and Scholarship
2005 American Heart Association (AHA) guidelines for cardiopulmonary resuscitation (CPR) and emergency cardiovascular care (ECC) of pediatric and neonatal patients: pediatric basic life support.
Dynamics of genome rearrangement in bacterial populations.
Evaluating MapReduce for Multi-core and Multiprocessor Systems
An improved, bias-reduced probabilistic functional gene network of baker's yeast, Saccharomyces cerevisiae.
Single-nucleotide mutation rate increases close to insertions/deletions in eukaryotes.
FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology
Advances in Single-Molecule Fluorescence Methods for Molecular Biology
From E-MAPs to module maps: dissecting quantitative genetic interactions using physical interactions
A user browsing model to predict search engine click data from past observations.
Uncovering individual and collective human dynamics from mobile phone records
Quantum random walks - an introductory overview
Nested Containment List (NCList): a new algorithm for accelerating interval query of genome alignment and interval databases
Gene expressionâ€“based survival prediction in lung adenocarcinoma: a multi-site, blinded validation study
A comprehensive comparison of random forests and support vector machines for microarray-based cancer classification
A comparative study of survival models for breast cancer prognostication based on microarray data: does a single gene beat them all?
Convergence Culture: Where Old and New Media Collide
BioBayes: A Software Package for Bayesian Inference in Systems Biology
Spatio-temporal correlations and visual signalling in a complete neuronal population
The effectiveness of m-learning in the form of podcast revision lectures in higher education
The diversity and biogeography of soil bacterial communities.
Statistical analysis of the social network and discussion threads in slashdot
Twenty-five years of quantitative PCR for gene expression analysis.
Wireless sensor network survey
Resource Partitioning and Sympatric Differentiation Among Closely Related Bacterioplankton
Genomic patterns of recombination, clonal divergence and environment in marine microbial populations
Simultaneous Analysis of All SNPs in Genome-Wide and Re-Sequencing Association Studies
The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome.
Nonnegative Matrix Factorization: An Analytical and Interpretive Tool in Computational Biology
Tapping Epistemological Resources for Learning Physics
Predicting and Validating Protein Interactions Using Network Structure
Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment
The rational exploration of microbial diversity.
To personalize or not to personalize: modeling queries with variation in user intent
Social software: fun and games, or business tools?
Rapid Prototyping of Microfluidic Systems in Poly(dimethylsiloxane)
The public road to high-quality curated biological pathways
Integrating protein-protein interactions and text mining for protein function prediction
Protein Complex Evolution Does Not Involve Extensive Network Rewiring
What is special about the ethical issues in online research?
The temporal precision of reward prediction in dopamine neurons
Towards Semantic Search
The use of theory in information science research
The John D. and Catherine T. MacArthur Foundation Series on Digital Media and Learning
The literature of bibliometrics, scientometrics, and informetrics
Organizational Change and development
The myopia of learning
Selecting good expansion terms for pseudo-relevance feedback
Exploring folksonomy for personalized search
Measurement of the Elastic Properties and Intrinsic Strength of Monolayer Graphene
The reorienting system of the human brain: from environment to theory of mind.
TF-IDF uncovered: a study of theories and probabilities
Accountabilities of presence: reframing location-based systems
Mobile Communication and Society: A Global Perspective
Observation of quantum-measurement backaction with an ultracold atomic gas
Substantial biases in ultra-short read data sets from high-throughput DNA sequencing
The CellML Model Repository
High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi.
The implications of human metabolic network topology for disease comorbidity
Real-time automatic tag recommendation
Efficient top-k querying over social-tagging networks
Social tag prediction
Injury Increases the Risk for PTSD: An Examination of Potential Neurobiological and Psychological Mediators
Integrating metabolic, transcriptional regulatory and signal transduction models in Escherichia coli
Asymmetric Amplitude Modulations of Brain Oscillations Generate Slow Evoked Responses
Widespread changes in protein synthesis induced by microRNAs
The impact of microRNAs on protein output
ICT in supporting collaborative learning: pedagogy and practice
Integrating biological data - the Distributed Annotation System
Comparative Analysis of Human Gut Microbiota by Barcoded Pyrosequencing
Accelerating the Annotation of Sparse Named Entities by Dynamic Sentence Selection
Definition, structure, content, use and impacts of electronic health records: a review of the research literature.
Alta-Cyclic: a self-optimizing base caller for next-generation sequencing
Metabolic gene regulation in a dynamically changing environment
{Principles of Instructional Design}
An HMM approach to genome-wide identification of differential histone modification sites from ChIP-seq data
Scalable Parallel Programming with CUDA
Patterns of Positive Selection in Six Mammalian Genomes
Open access publishing, article downloads, and citations: randomised controlled trial
Quantum interface between light and atomic ensembles
Simon and Polanyi on Rationality and Knowledge
Proteopedia - a scientific 'wiki' bridging the rift between three-dimensional structure and function of biomacromolecules
Predicting Pathway Membership via Domain Signatures
Minimal Forward Checking
Why Do Hubs in the Yeast Protein Interaction Network Tend To Be Essential: Reexamining the Connection between the Network Topology and Essentiality
High-Precision, Whole-Genome Sequencing of Laboratory Strains Facilitates Genetic Studies
The discovery of structural form
A critical evaluation of location based services and their potential
A Second Life for eHealth: Prospects for the Use of 3-D Virtual Worlds in Clinical Psychology
Larrabee: a many-core x86 architecture for visual computing
Fast multipole methods on graphics processors
Complex and Adaptive Dynamical Systems: A Primer
Lectures on Probability, Entropy, and Statistical Physics
Health 2.0 and Medicine 2.0: Tensions and Controversies in the Field
Cavity Opto-Mechanics
High-order combination effects and biological robustness
Constraints imposed by non-functional protein-protein interactions on gene expression and proteome size.
High-throughput, quantitative analyses of genetic interactions in E. coli
Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data
Evolution of the mammalian transcription factor binding repertoire via transposable elements
Performing statistical analyses on quantitative data in Taverna workflows: an example using R and maxdBrowse to identify differentially-expressed genes from microarray data.
Survival of the sparsest: robust gene networks are parsimonious
Cumulative cultural evolution in the laboratory: An experimental approach to the origins of structure in human language
Introducing categories to the practicing physicist
A Complete Neandertal Mitochondrial Genome Sequence Determined by High-Throughput Sequencing
The New Institutionalism: Organizational Factors in Political Life
ZOOM! Zillions of oligos mapped
An intronic microRNA silences genes that are functionally antagonistic to its host gene.
p53 Target Genes Sestrin1 and Sestrin2 Connect Genotoxic Stress and mTOR Signaling
Combining transcriptional datasets using the generalized singular value decomposition.
Socialtrust: tamper-resilient trust establishment in online communities
Segment-based multiple sequence alignment
Fluorescence-based methods in the study of protein-protein interactions in living cells.
ThemeRiver: visualizing theme changes over time
Annotation of metagenome short reads using proxygenes
An integrative approach for predicting interactions of protein regions
Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites
Neural correlates, computation and behavioural impact of decision confidence.
Drug discovery in the era of Facebookâ€”new tools for scientific networking
Feedback Effects between Similarity and Social Influence in Online Communities.
Tastes, ties, and time: A new social network dataset using Facebook.com
A fast algorithm for the maximum clique problem?
Iron Behaving Badly: Inappropriate Iron Chelation as a Major Contributor to the Aetiology of Vascular and Other Progressive Inflammatory and Degenerative Diseases
Optimal spliced alignments of short sequence reads.
BioJava: an Open-Source Framework for Bioinformatics
A general definition and nomenclature for alternative splicing events.
Three-dimensional optical metamaterial with a negative refractive index
SECI, Ba and Leadership: a Unified Model of Dynamic Knowledge Creation
Attention and awareness in stage magic: turning tricks into research
SeqMap: mapping massive amount of oligonucleotides to the genome
On the origin of distribution patterns of motifs in biological networks
A structured approach for the engineering of biochemical network models, illustrated for signalling pathways
CHARMMing: A New, Flexible Web Portal for CHARMM
Penalized feature selection and classification in bioinformatics.
A Formal Basis for the Heuristic Determination of Minimum Cost Paths
Testing the speed of 
Dynamic energy landscape view of coupled binding and protein conformational change: Induced-fit versus population-shift mechanisms
A Semantic Web Management Model for Integrative Biomedical Informatics
reCAPTCHA: Human-Based Character Recognition via Web Security Measures
Selective Constraints in Experimentally Defined Primate Regulatory Regions
Genetic Variation in an Individual Human Exome
Geometric interpretation of gene coexpression network analysis.
Impact of personal and cultural factors on knowledge sharing in China
The Synergizer service for translating gene, protein and other biological identifiers.
Connecting microRNA Genes to the Core Transcriptional Regulatory Circuitry of Embryonic Stem Cells
Applications of next-generation sequencing technologies in functional genomics.
The Collective Dynamics of Smoking in a Large Social Network
SIRENE: supervised inference of regulatory networks.
Facebook for scientists: requirements and services for optimizing how scientific collaborations are established.
Action anticipation and motor resonance in elite basketball players
The Intersection of Online Social Networking with Medical Professionalism
Opinion mining and sentiment analysis
Towards a cyberinfrastructure for the biological sciences: progress, visions and challenges
ProSOM: core promoter prediction based on unsupervised clustering of DNA physical profiles
Resolving Tag Ambiguity
Assessing the performance of implicit solvation models at a nucleic acid surface.
Applications of real-time fMRI
Multilabel classification via calibrated label ranking
Combining multivariate voxel selection and support vector machines for mapping and classification of fMRI spatial patterns.
Rapid shifts in plant distribution with recent climate change
Mapping short DNA sequencing reads and calling variants using mapping quality scores
The Genome Sequencer FLX System--longer reads, more applications, straight forward bioinformatics and more complete data sets.
Interhemispheric correlations of slow spontaneous neuronal fluctuations revealed in human sensory cortex.
Divergence of fMRI and neural signals in V1 during perceptual suppression in the awake monkey
A study of methods for negative relevance feedback
The impact of research on the development of middleware technology
Get Another Label? Improving Data Quality and Data Mining Using Multiple, Noisy Labelers
Strong regularities in online peer production
A performance study of general-purpose applications on graphics processors using CUDA
Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data
A toolkit for analysing large-scale plant small RNA datasets
A survey of autonomic computing---degrees, models, and applications
High-quality binary protein interaction map of the yeast interactome network.
Community detection in complex networks using Extremal Optimization
Influentials, Networks, and Public Opinion Formation
Modularity clustering is force-directed layout
Tracing information flow on a global scale using Internet chain-letter data
Synthetic biology through biomolecular design and engineering.
Modeling ChIP sequencing in silico with applications.
Gene Vector Analysis (Geneva): a unified method to detect differentially-regulated gene sets and similar microarray experiments.
Decomposability in Knowledge Structures and Its Impact on the Usefulness of Inventions and Knowledge-base Malleability
The Network Structure of Exploration and Exploitation
Structured machine learning: the next ten years
Integrating expression data with domain interaction networks
Seeder: discriminative seeding DNA motif discovery
The Claremont Report on Database Research
ITFP: an integrated platform of mammalian transcription factors
Medicine 2.0: Social Networking, Collaboration, Participation, Apomediation, and Openness
Comparing simulation results of SBML capable simulators.
Regulatory networks define phenotypic classes of human stem cell lines
PHYML Onlineâ€“a web server for fast maximum likelihood-based phylogenetic inference
STRING: a web-server to retrieve and display the repeatedly occurring neighbourhood of a gene
Laws of Population Growth
Born Digital: Understanding the First Generation of Digital Natives
PathCase: pathways database system.
Energy-dependent fitness: A quantitative model for the evolution of yeast transcription factor binding sites
[Without Title]
Preferential regulation of duplicated genes by microRNAs in mammals
A wiki for the life sciences where authorship matters
A comparison of random sequence reads versus 16S rDNA sequences for estimating the biodiversity of a metagenomic library
A common sequence motif associated with recombination hot spots and genome instability in humans
Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology
Accessing and integrating data and knowledge for biomedical research.
Offloading Cognition onto Cognitive Technology
Quantum dots versus organic dyes as fluorescent labels
Assessing the feasibility of GS FLX Pyrosequencing for sequencing the Atlantic salmon genome
Seeding and Propagation of Untransformed Mouse Mammary Cells in the Lung
Resolving individuals contributing trace amounts of DNA to highly complex mixtures using high-density SNP genotyping microarrays.
Categories for the practising physicist
The dynamic brain: from spiking neurons to neural masses and cortical fields.
Detecting Synonyms in Social Tagging Systems to Improve Content Retrieval
A catalog of neutral and deleterious polymorphism in yeast.
Merge: a programming model for heterogeneous multi-core systems
A Resource-Based View of the Firm
A nine year study of file system and storage benchmarking
Macromolecular modeling with rosetta.
"Methodology capture: discriminating between the ""best"" and the rest of community practice."
A Systematic Methodology for Defining Coarse-Grained Sites in Large Biomolecules
More Really is Different
{Robustness and evolvability: a paradox resolved}
A probability ranking principle for interactive information retrieval
Models from experiments: combinatorial drug perturbations of cancer cells
Linking spontaneous activity of single cortical neurons and the underlying functional architecture.
Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training.
Bosque: integrated phylogenetic analysis software
Phylogenetic Inference Using Whole Genomes
Genes mirror geography within Europe
Tissue cells feel and respond to the stiffness of their substrate
Configurations of fluid membranes and vesicles
Learning deep architectures for AI
Human-Specific Gain of Function in a Developmental Enhancer
Network-based prediction of human tissue-specific metabolism
Information extraction from Wikipedia: moving down the long tail
Internally Generated Reactivation of Single Neurons in Human Hippocampus During Free Recall
Internally Generated Cell Assembly Sequences in the Rat Hippocampus
A microRNA DNA methylation signature for human cancer metastasis
A probabilistic generative model for GO enrichment analysis
An Integrated Genomic Analysis of Human Glioblastoma Multiforme
Core signaling pathways in human pancreatic cancers revealed by global genomic analyses.
The first-mover advantage in scientific publication
Insights into Proteinâ€“DNA Interactions through Structure Network Analysis
Phylocom: software for the analysis of phylogenetic community structure and trait evolution
Replay of rulelearning related neural patterns in the prefrontal cortex during sleep
DrugViz: a Cytoscape plugin for visualizing and analyzing small molecule drugs in biological networks.
{Unraveling transcriptional regulatory programs by integrative analysis of microarray and transcription factor binding data}
Primary microRNA transcripts are processed co-transcriptionally
From del.icio.us to x.qui.site:               Recommendations in Social Tagging Sites
Cross-validation and bootstrapping are unreliable in small sample classification
Robust and efficient identification of biomarkers by classifying features on graphs.
Comprehensive genomic characterization defines human glioblastoma genes and core pathways
Integrated detection and population-genetic analysis of SNPs and copy number variation
Density-functional thermochemistry. III. The role of exact exchange
High-resolution metagenomics targets specific functional types in complex microbial communities
Deja vu: a database of highly similar citations in the scientific literature
Categorization of services for seeking information in biomedical literature: a typology for improvement of practice
A robust statistical method for case-control association testing with copy number variation.
FACTA: a text search engine for finding associated biomedical concepts.
Nominalization and Alternations in Biomedical Language
Fast Support Vector Machine Training and Classification on Graphics Processors
Improved recommendation based on collaborative tagging behaviors
Rapid whole-genome mutational profiling using next-generation sequencing technologies
The query-flow graph: model and applications
Systematic assessment of copy number variant detection via genome-wide SNP genotyping.
Unsupervised natural experience rapidly alters invariant object representation in visual cortex.
Using Wiki technology to support student engagement: Lessons from the trenches
Measuring microRNAs:  Comparisons of microarray and quantitative PCR measurements, and of different total RNA prep methods
Functional Copy-Number Alterations in Cancer
Is Mate Choice in Humans MHC-Dependent?
Species-Specific Transcription in Mice Carrying Human Chromosome 21
Evolution, Population Structure, and Phylogeography of Genetically Monomorphic Bacterial Pathogens
Unified relevance models for rating prediction in collaborative filtering
F-Seq: a feature density estimator for high-throughput sequence tags
The Division of Labor in Society
Prevolutionary dynamics and the origin of evolution
Finding Contradictions in Text
Growth of the flickr social network
Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVs
Health information, the Internet, and the digital divide
Gene set enrichment analysis using linear models and diagnostics.
Dominance and the evolutionary accumulation of cis- and trans-effects on gene expression
Remus: High Availability via Asynchronous Virtual Machine Replication
A C. elegans genome-scale microRNA network contains composite feedback motifs with high flux capacity.
Programmed cell death.
Model-based Analysis of ChIP-Seq (MACS)
MicroRNAs to Nanog, Oct4 and Sox2 coding regions modulate embryonic stem cell differentiation
SKN-1 links C. elegans mesendodermal specification to a conserved oxidative stress response.
Oxidative stress and aging: the use of superoxide dismutase/catalase mimetics to extend lifespan.
CBESW: sequence alignment on the Playstation 3.
Effects of habitat fragmentation on biodiversity
Human uniqueness: genome interactions with environment, behaviour and culture
Construct design for efficient, effective and high-throughput gene silencing in plants
The whole alignment and nothing but the alignment: the problem of spurious alignment flanks.
The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies
An Approximate Bayesian Estimator Suggests Strong, Recurrent Selective Sweeps in Drosophila
Crowdsourcing, Attention and Productivity
A Brief History of the Internet
Systematic bioinformatic analysis of expression levels of 17,330 human genes across 9,783 samples from 175 types of healthy and pathological tissues
Quercetin Protects Against Acute Immobilization Stress-Induced Behaviors and Biochemical Alterations in Mice
CI-KNOW: recommendation based on social networks
The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes
Exercise affects glutamate receptors in postsynaptic densities from cortical mice brain
Digital Copyright
Probabilistic phylogenetic inference with insertions and deletions.
Innate immunity and intestinal microbiota in the development of Type 1 diabetes
The anatomy of prototypes: Prototypes as filters, prototypes as manifestations of design ideas
Search for computational modules in the C. elegans brain.
R/parallel - speeding up bioinformatics analysis with R
Longevity genes: from primitive organisms to humans.
Cavity Optomechanics: Back-Action at the Mesoscale
Modelling and analysis of gene regulatory networks
Toward an epistemology of Wikipedia
Blueberry polyphenols increase lifespan and thermotolerance in Caenorhabditis elegans.
Network inference using informative priors
Oxidative Stress Enzymes are Required for DAF-16 Mediated Immunity due to Generation of Reactive Oxygen Species by C. elegans.
The infinite sites model of genome evolution.
Large-scale reconstruction and phylogenetic analysis of metabolic environments
Frequency-modulated nuclear localization bursts coordinate gene regulation
Complementary Therapies for Neuropathic and Neuralgic Pain: Systematic Review.
Databases as Scientific Instruments and Their Role in the Ordering of         Scientific Work
Crystal structure of opsin in its G-protein-interacting conformation
A few chirps about twitter
Presenting and exploring biological pathways with PathVisio.
Cancer stem cells in solid tumours: accumulating evidence and unresolved questions.
Prefrontal-Subcortical Pathways Mediating Successful Emotion Regulation
Direct inhibition of the longevity-promoting factor SKN-1 by insulin-like signaling in C. elegans.
Computational prediction of RNA structural motifs involved in posttranscriptional regulatory processes.
Digital Ethnography
Sequencing of natural strains of Arabidopsis thaliana with short reads
A bioinformatics tool for linking gene expression profiling results with public databases of microRNA target predictions
Conservation and Rewiring of Functional Modules Revealed by an Epistasis Map in Fission Yeast
The Line of Grace: Principles of Road Aesthetics in the Design of the Blue Ridge Parkway
Databases, data tombs and dust in the wind
Ecological Models and Data in R
Gene-Boosted Assembly of a Novel Bacterial Genome from Very Short Reads
Adaptive feedback generation to support teachers in web-based distance education
A Genomewide Functional Network for the Laboratory Mouse
Theory building from cases: Opportunities and challenges
Protein co-evolution, co-adaptation and interactions.
NMR structures of two designed proteins with high sequence identity but different fold and function
PNUTS: Yahoo!â€™s Hosted Data Serving Platform
Conceptualizing personal media
Microscopic evolution of social networks
Influence and correlation in social networks
Identification of genetic variants using bar-coded multiplexed sequencing
Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast
Cosmological perturbations
Flexible ligand docking to multiple receptor conformations: a practical alternative.
Learner and instructor identified success factors in distance education
A Specificity Map for the PDZ Domain Family
The convergence of carbohydrate active gene repertoires in human gut microbes
BibGlimpse: The case for a light-weight reprint manager in distributed literature research
Learning from labeled features using generalized expectation criteria
Statistical Challenges in Preprocessing in Microarray Experiments in Cancer
How to identify emerging research fields using scientometrics: An example in the field of Information Security
Challenges in the development of an HIV-1 vaccine.
The Rest is Noise: Listening to the Twentieth Century
Bayesian learning of biological pathways on genomic data assimilation
Phylogenetic distances are encoded in networks of interacting pathways.
Physical protein-protein interactions predicted from microarrays
Structural biology by NMR: structure, dynamics, and interactions.
Linking genes to literature: text mining, information extraction, and retrieval applications for biology
Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems
Thermodynamic signature of growing amorphous order in glass-forming liquids
The meaning of gene positioning.
Removal of AU bias from microarray mRNA expression data enhances computational identification of active microRNAs.
Identifying differentially expressed subnetworks with MMG.
Undergraduate Lecture Notes in Topological Quantum Field Theory
A minimalist network model for coarse-grained normal mode analysis and its application to biomolecular x-ray crystallography.
Theory of ultracold atomic Fermi gases
Genetic association analysis of copy-number variation (CNV) in human disease pathogenesis.
Predicting transcription factor specificity with all-atom models.
PID: the Pathway Interaction Database.
Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
Discarding functional residues from the substitution table improves predictions of active sites within three-dimensional structures.
Exploring social annotations for web document classification
Workflows and e-Science: An overview of workflow system features and capabilities
XplorSeq: A software environment for integrated management and phylogenetic analysis of metagenomic sequence data
CoGemiR: a comparative genomics microRNA database.
Global Reorganization of Replication Domains During Embryonic Stem Cell Differentiation
A Theory of Dark Matter
Bringing Web 2.0 to bioinformatics.
The Elements of Statistical Learning: Data Mining, Inference, and Prediction, Second Edition (Springer Series in Statistics)
MetaSim: a sequencing simulator for genomics and metagenomics.
Tools for simulating evolution of aligned genomic regions with integrated parameter estimation.
The development and impact of 454 sequencing
What would you do if you could sequence everything?
Next-generation DNA sequencing
The potential and challenges of nanopore sequencing
A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology
Environmental Genomics Reveals a Single-Species Ecosystem Deep Within Earth
Network Analysis Tools: from biological networks to clusters and pathways
Gene-set analysis and reduction
Text mining for biology - the way forward: opinions from leading scientists
High-Resolution Mapping of Expression-QTLs Yields Insight into Human Gene Regulation
Efficient mapping of Applied Biosystems SOLiD sequence data to a reference genome for functional genomic applications
Neuromimetic Semantics
Failure in identification of overlapping spikes from multiple neuron activity causes artificial correlations
An extensible infrastructure for fully automated spike sorting during online experiments
HermesB: A continuous neural recording system for freely behaving primates
Mining Meaning from Wikipedia
Analysis of copy number variants and segmental duplications in the human genome: Evidence for a change in the process of formation in recent evolutionary history
Reconstruction of Zebrafish Early Embryonic Development by Scanned Light Sheet Microscopy
Correlated evolution of interacting proteins: looking behind the mirrortree.
Probabilistic base calling of Solexa sequencing data
A neural code for three-dimensional object shape in macaque inferotemporal cortex.
Introducing meta-services for biomedical information extraction
Personalizing Navigation in Folksonomies Using Hierarchical Tag Clustering
SparTag.us: a low cost tagging system for foraging of web content
Genome-wide nucleotide-level mammalian ancestor reconstruction
Forget Time
A simple, fast, and accurate method of phylogenomic inference
GSEA-SNP: Applying Gene Set Enrichment Analysis to SNP data from genome-wide association studies
The quest for orthologs: finding the corresponding gene across genomes.
Multi-University Research Teams: Shifting Impact, Geography, and Stratification in Science
MicroRNA-directed transcriptional gene silencing in mammalian cells
Genetic basis of human brain evolution.
Hierarchically organized behavior and its neural foundations: a reinforcement learning perspective.
The molecular neurobiology of depression.
Evolutionary computation for discovery of composite transcription factor binding sites
BioVenn - a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams.
BioCaster: detecting public health rumors with a Web-based text mining system.
CMA - a comprehensive Bioconductor package for supervised classification with high dimensional data
Making Computer Games and Design Thinking: A Review of Current Software and Strategies
Phylogenetic analysis of community assembly and structure over space and time
How markets slowly digest changes in supply and demand
Higher-Order Cellular Information Processing with Synthetic RNA Devices
A Stochastic Single-Molecule Event Triggers Phenotype Switching of a Bacterial Cell
Surface Sites for Engineering Allosteric Control in Proteins
Nature, Nurture, or Chance: Stochastic Gene Expression and Its Consequences
Direct control of paralysed muscles by cortical neurons
Cytokine-induced signaling networks prioritize dynamic range over signal strength.
Analysis of regulatory network topology reveals functionally distinct classes of microRNAs
ChromaSig: A Probabilistic Approach to Finding Common Chromatin Signatures in the Human Genome
A Survey on Transfer Learning
An Investigation of the Statistical Power of Neutrality Tests Based on Comparative and Population Genetic Data
Epistasis--the essential role of gene interactions in the structure and evolution of genetic systems.
A quantitative model of transcription factorâ€“activated gene expression
Analyzing Flickr Groups
miROrtho: computational survey of microRNA genes.
miR2Disease: a manually curated database for microRNA deregulation in human disease.
Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms
Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database.
Traffic-sensitive controllers for multi-car elevators; design, multi-objective optimization and analysis
A Simple Introduction to Particle Physics
High Rate of Recent Transposable Elementâ€“Induced Adaptation in Drosophila melanogaster
Video Retrieval Based on Semantic Concepts
N-nitrosamine generation from ingested nitrate via nitric oxide in subjects with and without gastroesophageal reflux.
Bluejay 1.0: genome browsing and comparison with rich customization provision and dynamic resource linking.
Role of interleukin-6 in chronic muscle hyperalgesic priming.
Market-Oriented Cloud Computing: Vision, Hype, and Reality for Delivering IT Services as Computing Utilities
Expression-based Pathway Signature Analysis (EPSA): mining publicly available microarray data for insight into human disease.
Multiscale methods for macromolecular simulations.
Increase of insulin sensitivity and reversal of age-dependent glucose intolerance with inhibition of ASIC3.
Creating and sharing clinical decision support content with Web 2.0: Issues and examples.
{Community Structure in Graphs}
The Protein Feature Ontology: a tool for the unification of protein feature annotations.
InterPro: the integrative protein signature database
Small-scale copy number variation and large-scale changes in gene expression
The good, the bad and the wiki: Evaluating student-generated content for collaborative learning
Culture's consequences: Comparing values, behaviors, institutions, and organizations across nations
Sharing Vocabularies: Tag Usage in CiteULike
Bone-derived IGF-1 enhances bone pain through activation of acid-sensing nociceptors in bone metastases of breast cancer
An End to Endless Forms: Epistasis, Phenotype Distribution Bias, and Nonuniform Evolution
Fusion and Fission of Genes Define a Metric between Fungal Genomes
Aggressive assembly of pyrosequencing reads with mates
Creative elements: network-based predictions of active centres in proteins and cellular and social networks
Enredo and Pecan: Genome-wide mammalian consistency-based multiple alignment with paralogs
Prediction of human miRNAs using tissue-selective motifs in 3â€² UTRs
Guarding the gateway to cortex with attention in visual thalamus.
Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world.
Protein networks markedly improve prediction of subcellular localization in multiple eukaryotic species.
Poisson approximation for significance in genome-wide ChIP-chip tiling arrays
Characterizing social cascades in flickr
STRING 8--a global view on proteins and their functional interactions in 630 organisms.
Introduction to quantum noise, measurement, and amplification
Assessing the relevance of node features for network structure
Biclustering via optimal re-ordering of data matrices in systems biology: rigorous methods and comparative studies
Functional organization of the transcriptome in human brain.
Comparative genomics and the study of evolution by natural selection
Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system.
MetaMine - A tool to detect and analyse gene patterns in their environmental context
The GOA database in 2009--an integrated Gene Ontology Annotation resource.
Predicting Unobserved Phenotypes for Complex Traits from Whole-Genome SNP Data
minet: A R/Bioconductor Package for Inferring Large Transcriptional Networks Using Mutual Information
Computational cluster validation for microarray data analysis: experimental assessment of Clest, Consensus Clustering, Figure of Merit, Gap Statistics and Model Explorer
Whom Should I Trust? The Impact of Key Figures on Cold Start Recommendations
Models of coding sequence evolution.
Promise and Pitfalls of Extending Google's PageRank Algorithm to Citation Networks
Internet social network communities: Risk taking, trust, and privacy concerns
Positional distribution of human transcription factor binding sites.
Dispensability of mammalian DNA
Defrosting the digital library: bibliographic tools for the next generation web.
A fast, robust and tunable synthetic gene oscillator
Network pharmacology: the next paradigm in drug discovery
Boolean implication networks derived from large scale, whole genome microarray datasets
Cheap and Fast â€“ But is it Good? Evaluating Non-Expert Annotations for Natural Language Tasks
Differential privacy
A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes
Low-pass shotgun sequencing of the barley genome facilitates rapid identification of genes, conserved non-coding sequences and novel repeats
Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains.
Phosphoinositide 3-Kinase Binds to TRPV1 and Mediates NGF-stimulated TRPV1 Trafficking to the Plasma Membrane
Universality of citation distributions: Toward an objective measure of scientific impact
Alternative isoform regulation in human tissue transcriptomes.
Real-world concurrency
Most mammalian mRNAs are conserved targets of microRNAs
Learning transcriptional regulatory networks from high throughput gene expression data using continuous three-way mutual information
Phylogenetic Approaches to the Study of Extinction
Population Genetic Inference From Resequencing Data
Bodyspace: Anthropometry, Ergonomics and the Design of Work, Third Edition
Detecting microRNA binding and siRNA off-target effects from expression data.
Neutralism and selectionism: a network-based reconciliation
Network Hubs Buffer Environmental Variation in Saccharomyces cerevisiae
MicroRNAs in cancer.
Predicting the popularity of online content
A relation based measure of semantic similarity for Gene Ontology annotations
Why Model?
Personalized recommendation in social tagging systems using hierarchical clustering
Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding.
Real World Haskell
Accurate whole human genome sequencing using reversible terminator chemistry.
The diploid genome sequence of an Asian individual
DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome
BRENDA, AMENDA and FRENDA the enzyme information system: new content and tools in 2009.
The Organization of the Bacterial Genome
Soil eukaryotic functional diversity, a metatranscriptomic approach.
Evaluation of GO-based functional similarity measures using S. cerevisiae protein interaction and expression profile data.
Personal Genomes: When consent gets in the way
Quinones and aromatic chemical compounds in particulate matter induce mitochondrial dysfunction: implications for ultrafine particle toxicity.
The molecular face of lipid rafts in model membranes
Learning OpenCV: Computer Vision with the OpenCV Library
Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
Slider--maximum use of probability information for alignment of short sequence reads and SNP detection
High-throughput chromatin information enables accurate tissue-specific prediction of transcription factor binding sites.
Genetic mapping in human disease.
Spontaneous changes of neocortical code for associative memory during consolidation.
OWL 2: The next step for OWL
A novel signaling pathway impact analysis
High-resolution copy-number variation map reflects human olfactory receptor diversity and evolution.
Distinct Modes of Regulation by Chromatin Encoded through Nucleosome Positioning Signals
Facilitated variation: how evolution learns from past environments to generalize to new environments.
Inferring pathway activity toward precise disease classification.
An integrated software system for analyzing ChIP-chip and ChIP-seq data
Activity motifs reveal principles of timing in transcriptional control of the yeast metabolic network
Learning biological networks: from modules to dynamics
Genome-Wide Analysis of Human Disease Alleles Reveals That Their Locations Are Correlated in Paralogous Proteins
Reactome knowledgebase of human biological pathways and processes.
PIPs: human protein-protein interaction prediction database.
Expression of 24,426 human alternative splicing events and predicted cis regulation in 48 tissues and cell lines.
Matching task profiles and user needs in personalized web search
How does clickthrough data reflect retrieval quality?
Understanding the relationship between searchers' queries and information goals
Mining term association patterns from search logs for effective query reformulation
Ranking in folksonomy systems: can context help?
Using RSAT to scan genome sequences for transcription factor binding sites and cis-regulatory modules.
ArrayExpress update--from an archive of functional genomics experiments to the atlas of gene expression.
Patterns and collective behavior in granular media: Theoretical concepts
Social Ranking: Uncovering Relevant Content Using Tag-based Recommender Systems
Can all tags be used for search?
Rosuvastatin to Prevent Vascular Events in Men and Women with Elevated C-Reactive Protein
Empirical studies of agile software development: A systematic review
CREDO: A protein-ligand interaction database for drug discovery.
Accelerated ovarian failure induced by 4-vinyl cyclohexene diepoxide in Nrf2 null mice.
miRecords: an integrated resource for microRNA-target interactions.
High-resolution human core-promoter prediction with CoreBoost_HM
Discrete Time Filters for Doubly Stochastic Poisson Processes and Other Exponential Noise Models
A comprehensive functional analysis of tissue specificity of human gene expression.
CoCoNUT: an efficient system for the comparison and analysis of genomes
Identifying positioned nucleosomes with epigenetic marks in human from ChIP-Seq.
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis.
Human genomes as email attachments
ArrayPlex: distributed, interactive and programmatic access to genome sequence, annotation, ontology, and analytical toolsets
What Things Do: Philosophical Reflections on Technology, Agency, And Design
Genomic loss of microRNA-101 leads to overexpression of histone methyltransferase EZH2 in cancer.
Bringing physics to the surface
Investigating the correspondence between transcriptomic and proteomic expression profiles using coupled cluster models
e-Science: relieving bottlenecks in large-scale genome analyses
Synonymous Genes Explore Different Evolutionary Landscapes
Effects of ginkgo biloba extract EGb761 on expression of RAGE and LRP-1 in cerebral microvascular endothelial cells under chronic hypoxia and hypoglycemia.
The net of life: Reconstructing the microbial phylogenetic network
CellProfiler Analyst: data exploration and analysis software for complex image-based screens
Horizontal gene transfer of the algal nuclear gene psbO to the photosynthetic sea slug Elysia chlorotica
Benchmarking GPUs to tune dense linear algebra
Resveratrol and 4-hydroxynonenal act in concert to increase glutamate cysteine ligase expression and glutathione in human bronchial epithelial cells.
A Hierarchy of Time-Scales and the Brain
Hierarchical Models in the Brain
WebTables: exploring the power of tables on the web
Lead, Chemical Porphyria, and Heme as a Biological Mediator
Turning a hobby into a job: How duplicated genes find new functions
Transcription factor Nrf2 activation by inorganic arsenic in cultured keratinocytes: involvement of hydrogen peroxide.
The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing
Identifying differential correlation in gene/pathway combinations
Barriers to the Advance of Organizational Science: Paradigm Development as a Dependent Variable
DNAPlotter: circular and linear interactive genome visualization
MotifMap: a human genome-wide map of candidate regulatory motif sites
Sequencing the nuclear genome of the extinct woolly mammoth
Training set expansion: an approach to improving the reconstruction of biological networks from limited and uneven reliable interactions
Quantum algorithm for solving linear systems of equations
Tree, funny, to_read, google: what are tags supposed to achieve? a comparative analysis of user keywords for different digital resource types
ProtorP: a protein-protein interaction analysis server
RNA-Seq: a revolutionary tool for transcriptomics.
Real-Time DNA Sequencing from Single Polymerase Molecules
Nrf2 is a critical regulator of the innate immune response and survival during experimental sepsis
Toward an understanding of bug fix patterns
Optimizing Spatial filters for Robust EEG Single-Trial Analysis
De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae.
Dynamic Proteomics of Individual Cancer Cells in Response to a Drug
Gene regulation in primates evolves under tissue-specific selection pressures.
Fluorescent probes for super-resolution imaging in living cells
The Spreading of Disorder
Neutrality and Robustness in Evo-Devo: Emergence of Lateral Inhibition
Genome and proteome annotation: organization, interpretation and integration.
Human volition: towards a neuroscience of will.
Design principles of biochemical oscillators.
Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing
A formal analysis and taxonomy of task allocation in multi-robot systems
Disintegration of the Ecological Community
Analysis of combinatorial cis-regulation in synthetic and genomic promoters
Electronic Journals and Changes in Scholarly Article Seeking and Reading Patterns
How Colorful Was Your Day? Why Questionnaires Cannot Assess Presence in Virtual Environments
Teaching for Quality Learning at University (Society for Research Into Highter Education)
Tabulator: Exploring and analyzing linked data on the semantic web
Detecting influenza epidemics using search engine query data
Whole-cell 3D STORM reveals interactions between cellular structures with nanometer-scale resolution
What if Time Really Exists?
A general framework for multiple testing dependence
The long tail of recommender systems and how to leverage it
Integrating tags in a semantic content-based recommender
EMAAS: an extensible grid-based rich internet application for microarray data analysis and management.
Articles by latin american authors in prestigious journals have fewer citations.
A large genome center's improvements to the Illumina sequencing system
Decline in transcriptional activity of Nrf2 causes age-related loss of glutathione synthesis, which is reversible with lipoic acid
Nrf2 activation by sulforaphane restores the age-related decrease of T(H)1 immunity: role of dendritic cells.
A multilayer ontology-based hybrid recommendation model
EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates
CORE_TF: a user-friendly interface to identify evolutionary conserved transcription factor binding sites in sets of co-regulated genes.
Stimulus contrast modulates functional connectivity in visual cortex.
Pro-oxidative diesel exhaust particle chemicals inhibit LPS-induced dendritic cell responses involved in T-helper differentiation.
AmiGO: online access to ontology and annotation data
Genome Environment Browser (GEB): a dynamic browser for visualising high-throughput experimental data in the context of genome features.
Microarray-based gene set analysis: a comparison of current methods.
Annotation of Mammalian Primary microRNAs
Arena3D: visualization of biological networks in 3D
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
MicroRNA target site polymorphisms and human disease.
In-depth characterization of the microRNA transcriptome in a leukemia progression model
Differentiating Protein-Coding and Noncoding RNA: Challenges and Ambiguities
SIRT1 Redistribution on Chromatin Promotes Genomic Stability but Alters Gene Expression during Aging
Tight Regulation of Unstructured Proteins: From Transcript Synthesis to Protein Degradation
An epigenetic role for maternally inherited piRNAs in transposon silencing.
Age-dependent evolution of the yeast protein interaction network suggests a limited role of gene duplication and divergence.
Genetics Meets Metabolomics: A Genome-Wide Association Study of Metabolite Profiles in Human Serum
Entrainment of neocortical neurons and gamma oscillations by the hippocampal theta rhythm.
Resveratrol induces glutathione synthesis by activation of Nrf2 and protects against cigarette smoke-mediated oxidative stress in human lung epithelial cells
Coordinate regulation of Phase I and II xenobiotic metabolisms by the Ah receptor and Nrf2.
A core gut microbiome in obese and lean twins
Logical independence and quantum randomness
Cloud computing - Issues, research and implementations
Biodiversity management in the face of climate change: A review of 22 years of recommendations
Metabolic endotoxemia initiates obesity and insulin resistance.
A survey of visualization tools for biological network analysis.
An ontology of scientific experiments
Nucleic Acids Research annual Database Issue and the NAR online Molecular Biology Database Collection in 2009
Quantum algorithms for algebraic problems
If I Were You: Perceptual Illusion of Body Swapping
The Human Phenotype Ontology: a tool for annotating and analyzing human hereditary disease.
Cell shape and cell-wall organization in Gram-negative bacteria
A bioinformatician's guide to metagenomics.
A simple model of bipartite cooperation for ecological and organizational networks
Assaying the regulatory potential of mammalian conserved non-coding sequences in human cells
Algorithm of OMA for large-scale orthology inference.
Design and analysis of ChIP-seq experiments for DNA-binding proteins.
LRpath: a logistic regression approach for identifying enriched biological groups in gene expression data
Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains
Extracting information from textual documents in the electronic health record: a review of recent research.
Dynamic spread of happiness in a large social network: longitudinal analysis over 20 years in the Framingham Heart Study
The antisense transcriptomes of human cells.
Effects of cis and trans Genetic Ancestry on Gene Expression in African Americans
â€˜Metabolite-likenessâ€™ as a criterion in the design and selection of pharmaceutical drug libraries
FitSNPs: highly differentially expressed genes are more likely to have variants associated with disease.
Honest Signals: How They Shape Our World
Brassica taxonomy based on nuclear restriction fragment length polymorphisms (RFLPs)
RNA exosome depletion reveals transcription upstream of active human promoters.
Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks.
Divergent transcription from active promoters.
Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters
A predictive model for identifying mini-regulatory modules in the mouse genome.
Oxidative and Excitatory Mechanisms of Developmental Neurotoxicity: Transcriptional Profiles for Chlorpyrifos, Diazinon, Dieldrin and Divalent Nickel in PC12 Cells
Curcumin blocks chronic morphine analgesic tolerance and brain-derived neurotrophic factor upregulation.
Living and Learning with New Media: Summary of Findings from the Digital Youth Project
Antioxidant Activity of Tea Polyphenols In Vivo: Evidence from Animal Studies
Nrf2 is a key transcription factor that regulates antioxidant defense in macrophages and epithelial cells: protecting against the proinflammatory and oxidizing effects of diesel exhaust chemicals.
Read-Optimized Databases, In Depth
Social networks that matter: Twitter under the microscope
Knowledge of the Firm, Combinative Capabilities, and the Replication of Technology
Data curation + process curation=data integration + science
Building biomedical web communities using a semantically aware content management system
Linked data and provenance in biological data webs
Facts from text: can text mining help to scale-up high-quality manual curation of gene products with ontologies?
Identification of microRNA regulatory modules in Arabidopsis via a probabilistic graphical model
Sequence progressive alignment, a framework for practical large-scale probabilistic consistency alignment
SNPFile - A software library and file format for large scale association mapping and population genetics studies
Targeted screening of cis-regulatory variation in human haplotypes.
De novo fragment assembly with short mate-paired reads: Does the read length matter?
Feshbach Resonances in Ultracold Gases
Multi-label literature classification based on the Gene Ontology graph
An experimentally derived confidence score for binary protein-protein interactions
Biodiversity informatics: managing and applying primary biodiversity data
Social Tagging and Music Information Retrieval
Two-component spinor techniques and Feynman rules for quantum field theory and supersymmetry
Mouse and touchscreen selection in the upper and lower visual fields
Prioritizing risk pathways: a novel association approach to searching for disease pathways fusing SNPs and pathways
NCBI GEO: archive for high-throughput functional genomic data.
Molecular characterization of human Argonaute-containing ribonucleoprotein complexes and their bound target mRNAs
Progress and challenges in genome-wide association studies in humans
Reverse engineering the genotypeâ€“phenotype map with natural genetic variation
Towards responsible use of cognitive-enhancing drugs by the healthy
Shared and Distinct Genetic Variants in Type 1 Diabetes and Celiac Disease
Harnessing the Wisdom of Crowds in Wikipedia: Quality Through Coordination
Visual Image Reconstruction from Human Brain Activity using a Combination of Multiscale Local Image Decoders
Quantum Computers
PASTAA: identifying transcription factors associated with sets of co-regulated genes.
Petabyte-scale innovations at the European Nucleotide Archive.
The Columbia Grasp Database
The population genetics of dN/dS.
A coword analysis of scientometrics
Chromatin-Associated Periodicity in Genetic Variation Downstream of Transcriptional Start Sites
{Large-Scale Sentiment Analysis for News and Blogs}
High-resolution mapping of copy-number alterations with massively parallel sequencing
Chandra Cluster Cosmology Project III: Cosmological Parameter Constraints
Novelty and diversity in information retrieval evaluation
Annotating genomes with massive-scale RNA sequencing
Methylmercury Toxicity and Nrf2-dependent Detoxification in Astrocytes
High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies
Factorization meets the neighborhood: a multifaceted collaborative filtering model
Ethnographic Approaches to the Internet and Computer-Mediated Communication
PocketMatch: A new algorithm to compare binding sites in protein structures
CDD: specific functional annotation with the Conserved Domain Database.
Sirt1 promotes fat mobilization in white adipocytes by repressing PPAR-[gamma]
Barcodes for genomes and applications
The DNA-encoded nucleosome organization of a eukaryotic genome
Buffering by gene duplicates: an analysis of molecular correlates and evolutionary conservation.
Library managers and information in World 2.0
De novo assembly of the Pseudomonas syringae pv. syringae B728a genome using Illumina/Solexa short sequence reads.
Genotype-phenotype databases: challenges and solutions for the post-genomic era.
MicroRNA target prediction by expression analysis of host genes
Better bioinformatics through usability analysis.
Evaluating contributions of natural language parsers to protein-protein interaction extraction
"""REVERSE ECOLOGY"" AND THE POWER OF POPULATION GENOMICS"
Predicting the binding preference of transcription factors to individual DNA k-mers
Complex fate of paralogs
GeneChaser: identifying all biological and clinical conditions in which genes of interest are differentially expressed.
Label-Free Biomedical Imaging with High Sensitivity by Stimulated Raman Scattering Microscopy
Prediction of regulatory elements in mammalian genomes using chromatin signatures
Up-to-date catalogues of yeast protein complexes.
KEGG spider: interpretation of genomics data in the context of the global gene metabolic network
Machine learning classifiers and fMRI: A tutorial overview
targetTB: A target identification pipeline for Mycobacterium tuberculosis through an interactome, reactome and genome-scale structural analysis
A Review of Sirt1 and Sirt1 Modulators in Cardiovascular and Metabolic Diseases
Developmental constraints on vertebrate genome evolution.
Glucose control and vascular complications in veterans with type 2 diabetes.
Inclusion of ionization states of ligands in affinity calculations
Recommending scientific articles using citeulike
Genomics made easier: an introductory tutorial to genome datamining.
GeneTrailExpress: a web-based pipeline for the statistical evaluation of microarray experiments.
Guidelines for conducting and reporting case study research in software engineering
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.
Direct observation of the nanoscale dynamics of membrane lipids in a living cell
A sequence-level map of chromosomal breakpoints in the MCF-7 breast cancer cell line yields insights into the evolution of a cancer genome
The meaning of alignment: lessons from structural diversity
Solvent dramatically affects protein structure refinement
AnnotationSketch: a genome annotation drawing library
Characteristics of distance learners: research on relationships of learning motivation, learning strategy, self-efficacy, attribution and learning results
The Problem Of Gauge Theory
Solutions for data integration in functional genomics: a critical assessment and case study.
Targeting cancer with small molecule kinase inhibitors
Modeling user rating profiles for collaborative filtering
Quality assessment and data analysis for microRNA expression arrays.
Concepts and categories: A cognitive neuropsychological perspective
Similarity cross-analysis of tag / co-tag spaces in social classification systems
SPRINT: a new parallel framework for R.
WGCNA: an R package for weighted correlation network analysis
Cost-effective strategies for completing the interactome
An empirical framework for binary interactome mapping.
Microscopy and its focal switch
Kronecker Graphs: An Approach to Modeling Networks
arrayQualityMetrics--a bioconductor package for quality assessment of microarray data.
Optical manipulation of nanoparticles and biomolecules in sub-wavelength slot waveguides
DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways
Reconstruction of biochemical networks in microorganisms
Regularized gene selection in cancer microarray meta-analysis
High-Resolution Analysis of the 5â€²-End Transcriptome Using a Next Generation DNA Sequencer
Software Design for Empowering Scientists
Questioning the ubiquity of neofunctionalization.
Hexastore: sextuple indexing for semantic web data management
Analysis of the platypus genome suggests a transposon origin for mammalian imprinting
Genetics and the understanding of selection
Pseudocounts for transcription factor binding sites
Chromatin structure analyses identify miRNA promoters
Learning to link with wikipedia
Scientific Computing in the Cloud
GenomeGraphs: integrated genomic data visualization with R.
Why Peer Discussion Improves Student Performance on In-Class Concept Questions
PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls
Identification of direct residue contacts in proteinâ€“protein interaction by message passing
Syntactical negation detection in clinical practice guidelines.
Bidirectional promoters generate pervasive transcription in yeast
SCARF: maximizing next-generation EST assemblies for evolutionary and population genomic analyses
Self-Sustained Replication of an RNA Enzyme
How to use an article about genetic association: A: Background concepts.
Evolution of Regulatory Sequences in 12 Drosophila Species
Why Is the Correlation between Gene Importance and Gene Evolutionary Rate So Weak?
Differential Dependency Network Analysis to Identify Condition-Specific Topological Changes in Biological Networks
Human microRNAs co-silence in well-separated groups and have different predicted essentialities.
A novel method for large tree visualization.
Precision and recall estimates for two-hybrid screens.
Semantic texton forests for image categorization and segmentation
Posttranscriptional crossregulation between Drosha and DGCR8.
MicroRNA Control in the Immune System: Basic Principles
Optimization of gene expression by natural selection
Transcriptome sequencing to detect gene fusions in cancer
Demonstration of an ultracold micro-optomechanical oscillator in a cryogenic cavity
Functional anatomy of polycomb and trithorax chromatin landscapes in Drosophila embryos.
BioMart - biological queries made easy
A comparative study of social network models: network evolution models and nodal attribute models
Similarity Measures for Protein Ensembles
A transcription factor affinity-based code for mammalian transcription initiation
Nanoscale magnetic resonance imaging
Cloud Computing and Grid Computing 360-Degree Compared
Decanalization and the origin of complex disease
Small silencing RNAs: an expanding universe.
Phylogenetic and Functional Assessment of Orthologs Inference Projects and Methods
Revisiting the principles of microRNA target recognition and mode of action.
A hierarchical model for incomplete alignments in phylogenetic inference
Detecting intergene correlation changes in microarray analysis: a new approach to gene selection.
The evolution of hierarchical gene regulatory networks
Pervasive Hitchhiking at Coding and Regulatory Sites in Humans
A surgical safety checklist to reduce morbidity and mortality in a global population.
The Dynamics and Time Scale of Ongoing Genomic Erosion in Symbiotic Bacteria
Synaptic depression enables neuronal gain control.
A tunable synthetic mammalian oscillator
Stochastic modelling for quantitative description of heterogeneous biological systems
State-dependent computations: spatiotemporal processing in cortical networks
Moby and Moby 2: Creatures of the Deep (Web)
Social tags: meaning and suggestions
Recombination of Retrotransposon and Exogenous RNA Virus Results in Nonretroviral cDNA Integration
An innovative approach for testing bioinformatics programs using metamorphic testing
The human intestinal microbiome: a new frontier of human biology.
Restrictions on biological adaptation in language evolution.
Environment and exposure to solvent of protein atoms. Lysozyme and insulin.
Jalview Version 2Ã¢Â€Â”a multiple sequence alignment editor and analysis workbench
The Politics of the Earth: Environmental Discourses
Cell Lineages and the Logic of Proliferative Control
Diversifying Search Results
Rfam: updates to the RNA families database
Target discovery from data mining approaches.
Designing genome-wide association studies: sample size, power, imputation and the choice of genotyping chip
DNA methylation profiles in monozygotic and dizygotic twins.
Evolution of genome architecture.
Portraits of complex networks
Generations of sequencing technologies
Input-output behavior of ErbB signaling pathways as revealed by a mass action model trained against dynamic data.
Anticipatory haemodynamic signals in sensory cortex not predicted by local neuronal activity
A three-dimensional view of the molecular machinery of RNA interference
On the road to reading the RNA-interference code
Biomedical word sense disambiguation with ontologies and metadata: automation meets accuracy.
Methionine sulfoxide reductase (MsrA) is a regulator of antioxidant defense and lifespan in mammals
Short-Read Sequencing Technologies for Transcriptional Analyses
Purification of Proteins Associated with Specific Genomic Loci
The Peopling of the Pacific from a Bacterial Perspective
Genetic Interactions Between Transcription Factors Cause Natural Variation in Yeast
High-resolution DNA-binding specificity analysis of yeast transcription factors
Biogenesis of small RNAs in animals.
Sequencing Technologies - The Next Generation
Integrating Computational Biology and Forward Genetics in Drosophila
Allegro: Analyzing expression and sequence in concert to discover regulatory programs
IS A NEW AND GENERAL THEORY OF MOLECULAR SYSTEMATICS EMERGING?
Use of Facebook in academic health sciences libraries.
Population analysis of large copy number variants and hotspots of human genetic disease.
Genome Projector: zoomable genome map with multiple views.
Active Learning Literature Survey
Widespread bidirectional promoters are the major source of cryptic transcripts in yeast.
An Open Access Database of Genome-wide Association Results
Mechanistic niche modelling: combining physiological and spatial data to predict species' ranges
Computational evaluation of protein-small molecule binding.
Effects of energy policies on industry expansion in renewable energy
Web 2.0 tools in medical and nursing school curricula.
Quantum gravity at a Lifshitz point
bioDBnet: the biological database network
Sparse canonical methods for biological data integration: application to a cross-platform study
Post-transcriptional processing generates a diversity of 5'-modified long and short RNAs.
AssociationViewer: a scalable and integrated software tool for visualization of large-scale variation data in genomic context.
Quantifying environmental adaptation of metabolic pathways in metagenomics.
Development of an improved four-site water model for biomolecular simulations: TIP4P-Ew
Biochemical simulations: stochastic, approximate stochastic and hybrid approaches
"Concatenated Analysis Sheds Light on Early Metazoan Evolution and Fuels a Modern ""Urmetazoon"" Hypothesis"
HapMap methylation-associated SNPs, markers of germline DNA methylation, positively correlate with regional levels of human meiotic recombination
The Eucalyptus Open-source Cloud-computing System
The Genome Reverse Compiler: an explorative annotation tool
Gene regulatory network inference: Data integration in dynamic modelsâ€”A review
Model of genetic variation in human social networks
Protein folding studied by single-molecule FRET
Repeatability of published microarray gene expression analyses
WiFi networks and malware epidemiology
The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores
Semantic Modelling of User Interests Based on Cross-Folksonomy Analysis
Flickr distance
Testing significance relative to a fold-change threshold is a TREAT
Hotspots of Biased Nucleotide Substitutions in Human Genes
Extracting Lexical Semantic Knowledge from Wikipedia and Wiktionary
Generalized linear mixed models: a practical guide for ecology and evolution.
Prediction of Proteinâ€“Protein Interaction Sites in Sequences and 3D Structures by Random Forests
Protein domain organisation: adding order
Divergent Evolution of Duplicate Genes Leads to Genetic Incompatibilities Within A. thaliana
Computations of Standard Binding Free Energies with Molecular Dynamics Simulations
Multiple whole-genome alignments without a reference organism
Corpus-based and knowledge-based measures of text semantic similarity
Genomic location analysis by ChIP-Seq.
Mechanisms of drug combinations: interaction and network perspectives
Learning a prior on regulatory potential from eQTL data.
Sudden Death of Entanglement
Biophysical characterization of intrinsically disordered proteins
Flow and immersion in first-person shooters: measuring the player's gameplay experience
The Failure of Dissertation Advice Books: Toward Alternative Pedagogies for Doctoral Writing
Impact of normalization on miRNA microarray expression profiling
iTunes University and the classroom: Can podcasts replace Professors?
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
Large-scale structural analysis of the classical human protein tyrosine phosphatome.
CORNA: testing gene lists for regulation by microRNAs
Biological basis for restriction of microRNA targets to the 3â€² untranslated region in mammalian mRNAs
Very large graphs
Comparison of small n statistical tests of differential expression applied to microarrays.
Is searching full text more effective than searching abstracts?
Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths.
Prediction of membrane protein structures with complex topologies using limited constraints
Strengthening the reporting of genetic association studies (STREGA): an extension of the STROBE Statement.
A general modular framework for gene set enrichment analysis.
GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists
Can you ever trust a wiki?: impacting perceived trustworthiness in wikipedia
Alignment-free genome comparison with feature frequency profiles (FFP) and optimal resolutions
Accelerating molecular dynamic simulation on graphics processing units
SciMiner: web-based literature mining tool for target identification and functional enrichment analysis.
A resource-adaptive mobile navigation system
Dynamic modularity in protein interaction networks predicts breast cancer outcome.
Cryptic Variation in the Human Mutation Rate
Mars: a MapReduce framework on graphics processors
Mitochondrial H2O2 emission and cellular redox state link excess fat intake to insulin resistance in both rodents and humans
Association of reactive oxygen species levels and radioresistance in cancer stem cells.
Differential chromatin marking of introns and expressed exons by H3K36me3.
Is Genetic Evolution Predictable?
Computational Social Science
The Bacterial Species Challenge: Making Sense of Genetic and Ecological Diversity
A genome-wide investigation of SNPs and CNVs in schizophrenia.
Interpretation of genetic association studies: markers with replicated highly significant odds ratios may be poor classifiers.
Outcome prediction based on microarray analysis: a critical perspective on methods.
Revealing representational content with pattern-information fMRIÃ¢Â€Â”an introductory guide
Changes in use and perception of facebook
Online and Offline Social Networks: Use of Social Networking Sites by Emerging Adults
Complex brain networks: graph theoretical analysis of structural and functional systems.
Protein promiscuity and its implications for biotechnology
Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing
Papers on Normalization, Variable Selection, Classification, or Clustering of Microarray Data
Absolute humidity modulates influenza survival, transmission, and seasonality
Trust Metrics in Recommender Systems
Adaptive Radiation: Contrasting Theory with Data
A canonical promoter organization of the transcription machinery and its regulators in the Saccharomyces genome.
Predicting human resting-state functional connectivity from structural connectivity.
TASI Lectures on Inflation
Cepred: predicting the co-expression patterns of the human intronic microRNAs with their host genes.
Evolutionary Conserved Motif Finder (ECMFinder) for genome-wide identification of clustered YY1- and CTCF-binding sites
Beyond Microblogging: Conversation and Collaboration via Twitter
Mega-phylogeny approach for comparative biology: an alternative to supertree and supermatrix approaches
Understanding the intent behind mobile information needs
Rich interfaces for reading news on the web
Tagsplanations: explaining recommendations using tags
Deep homology and the origins of evolutionary novelty.
Meta-analysis of age-related gene expression profiles identifies common signatures of aging
A burst of segmental duplications in the genome of the African great ape ancestor
ChIP-seq accurately predicts tissue-specific activity of enhancers
Clustering the tagged web
Classifying tags using open content resources
Comprehensive polymorphism survey elucidates population structure of Saccharomyces cerevisiae.
Above the Clouds: A Berkeley View of Cloud Computing
Network Analysis in the Social Sciences
Sequencing and Analyses of All Known Human Rhinovirus Genomes Reveals Structure and Evolution
Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing.
Nucleosome positioning and gene regulation: advances through genomics
Effective population size and patterns of molecular evolution and variation
Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling
Collaborative Annotation for Context-Aware Retrieval
Innovation studiesâ€”The emerging structure of a new scientific field
A Genome-Scale Metabolic Reconstruction of Mycoplasma genitalium, iPS189
Gene expression levels are a target of recent natural selection in the human genome.
Module networks revisited: computational assessment and prioritization of model predictions
A groupwise association test for rare mutations using a weighted sum statistic.
PASS: a program to align short sequences.
CoCAS: a ChIP-on-chip analysis suite.
Toward a Unified Ontology of Cloud Computing
A Principal Component Analysis of 39 Scientific Impact Measures
Why are modern scientists so dull? How science selects for perseverance and sociability at the expense of intelligence and creativity
Knowledge management in biomedical libraries: A semantic web approach
Computational Intelligence for Evolving Trading Rules
Novel web-based tools combining chemistry informatics, biology and social networks for drug discovery
Darwinian evolution in the light of genomics
The Role of N-Methyl-d-Aspartate (NMDA) Receptors in Pain: A Review
BMC Bioinformatics
Noninvasive cortical stimulation enhances motor skill acquisition over multiple days through an effect on consolidation.
A Study of User Profile Generation from Folksonomies
A break in the clouds: towards a cloud definition
Mapping complex disease traits with global gene expression.
Long non-coding RNAs: insights into functions
Modulation of dopamine transporter function by &alpha;-synuclein is altered by impairment of cell adhesion and by induction of oxidative stress
Modularity and interactions in the genetics of gene expression.
gcExplorer: interactive exploration of gene clusters.
Crowdsourcing: Why the Power of the Crowd Is Driving the Future of Business
Stress-inducible regulation of heat shock factor 1 by the deacetylase SIRT1.
Anomaly Detection: A Survey
An integrative scoring system for ranking SNPs by their potential deleterious effects
CGAS: comparative genomic analysis server.
The impact of genomic neighborhood on the evolution of human and chimpanzee transcriptome.
Open Access and Global Participation in Science
Identification of differential gene pathways with principal component analysis.
OnTheFly: a tool for automated document-based text annotation, data linking and network generation
Extracting information from neuronal populations: information theory and decoding approaches
RankAggreg, an R package for weighted rank aggregation
Allosteric Communication Occurs via Networks of Tertiary and Quaternary Motions in Proteins
Estimating the size of the bacterial pan-genome
Statistical methods of background correction for Illumina BeadArray data.
The minimum information principle and its application to neural code analysis
Decoding reveals the contents of visual working memory in early visual areas
Reinforcement learning in populations of spiking neurons
Mice deficient in TNF receptors are protected against dopaminergic neurotoxicity: Implications for Parkinson's disease
MOM: maximum oligonucleotide mapping
Using genome-wide pathway analysis to unravel the etiology of complex diseases.
Continuous base identification for single-molecule nanopore DNA sequencing
Evolution and functions of long noncoding RNAs.
Tag recommendations based on tensor dimensionality reduction
Personalized, interactive tag recommendation for flickr
PEMer: a computational framework with simulation-based error models for inferring genomic structural variants from massive paired-end sequencing data
Transcriptional infidelity promotes heritable phenotypic change in a bistable gene network.
Uncovering the rules for protein-protein interactions from yeast genomic data.
Sequence context-specific profiles for homology searching
Mapping the World's Photos
Communities in Networks
Spectral Dimension of the Universe in Quantum Gravity at a Lifshitz Point
Ontology-driven indexing of public datasets for translational bioinformatics.
microPred: effective classification of pre-miRNAs for human miRNA gene prediction
The outbreak of cooperation among success-driven individuals under noisy conditions
Eventually Consistent
A roadmap of clustering algorithms: finding a match for a biomedical application
A survey of available tools and web servers for analysis of proteinÃ¢Â€Â“protein interactions and interfaces
A framework for evolutionary systems biology.
QSRA - a quality-value guided de novo short read assembler
Speeded-Up Robust Features ({SURF})
Empirical distributional semantics: Methods and biomedical applications
Bridging high-throughput genetic and transcriptional data reveals cellular responses to alpha-synuclein toxicity
Systems genetics of complex traits in Drosophila melanogaster.
PROMOT: modular modeling for systems biology
Selection on codon bias.
Origins and Mechanisms of miRNAs and siRNAs.
Exploring the human genome with functional maps
Disease candidate gene identification and prioritization using protein interaction networks
ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks.
Oxytocin Shapes the Neural Circuitry of Trust and Trust Adaptation in Humans
Statistical inferences for isoform expression in RNA-Seq
Word sense disambiguation: A survey
Prospects for Life Span Extension*
"The ""etiome"": identification and clustering of human disease etiological factors"
Global networks of functional coupling in eukaryotes from comprehensive data integration
ABySS: A parallel assembler for short read sequence data
Improving MapReduce Performance in Heterogeneous Environments
Methods for comparative metagenomics.
RGG: a general GUI Framework for R scripts.
Many roads to maturity: microRNA biogenesis pathways and their regulation
Statistics and Social Network of YouTube Videos
Google Scholar Search Performance: Comparative Recall and Precision
Protein allostery, signal transmission and dynamics: a classification scheme of allosteric mechanisms.
A unified model of protein dynamics
Comparative Functional Analysis of the Caenorhabditis elegans and Drosophila melanogaster Proteomes
Importance Weighted Active Learning
Living with Infinities
Academic Libraries, Facebook and MySpace, and Student Outreach: A Survey of Student Opinion
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
On the Use of Cloud Computing for Scientific Workflows
Big Genomes Facilitate the Comparative Identification of Regulatory Elements
Random hypergraphs and their applications
The Decision View's Role in Software Architecture Practice
The MIQE Guidelines: Minimum Information for Publication of Quantitative Real-Time PCR Experiments
Pharmspresso: a text mining tool for extraction of pharmacogenomic concepts and relationships from full text.
A review of innovation research in economics, sociology and technology management
Textual data compression in computational biology: a synopsis
Beyond odds ratios--communicating disease risk based on genetic profiles.
Adaptable data management for systems biology investigations.
Correlation signature of the macroscopic states of the gene regulatory network in cancer
The Physics of Cosmic Acceleration
Intrinsic variability of gene expression encoded in nucleosome positioning sequences.
Gene expression divergence in yeast is coupled to evolution of DNA-encoded nucleosome organization.
The use of gene ontology evidence codes in preventing classifier assessment bias
Functional organization of the S. cerevisiae phosphorylation network.
Multivariate analysis of variance test for gene set analysis.
The Prevalence and Use of Web 2.0 in Libraries
CNV-seq, a new method to detect copy number variation using high-throughput sequencing
Learning to Tag
Metagenomic Pyrosequencing and Microbial Identification
OpenER, a Dutch initiative in Open Educational Resources
The dark side of information: overload, anxiety and other paradoxes and pathologies
Mapping the conformational transition in Src activation by cumulating the information from multiple molecular dynamics trajectories
Segmental copy number variation shapes tissue transcriptomes.
Clickstream Data Yields High-Resolution Maps of Science
Computational systems biology of the cell cycle
A consistency-based consensus algorithm for de novo and reference-guided sequence assembly of short reads
International collaboration in science and the formation of a core group
Finding evolutionarily conserved cis-regulatory modules with a universal set of motifs
Finding the fifth base: Genome-wide sequencing of cytosine methylation
Is protein classification necessary? Toward alternative approaches to function annotation
Using biological networks to search for interacting loci in genome-wide association studies
How Social Is My Personal Learning Environment (PLE)?, Part 1
Prolonged acetylcholine-induced vasodilatation in the peripheral microcirculation of patients with chronic fatigue syndrome
Explosive Percolation in Random Networks
Selective erasure of a fear memory.
TFCat: the curated catalog of mouse and human transcription factors.
Line graphs, link partitions, and overlapping communities
Local DNA Topography Correlates with Functional Noncoding Regions of the Human Genome
Alignment and Prediction of cis-Regulatory Modules Based on a Probabilistic Model of Evolution
GeNGe: systematic generation of gene regulatory networks.
ChIP-seq: Using high-throughput sequencing to discover proteinâ€“DNA interactions
Planetary-scale views on a large instant-messaging network
Life sciences on the Semantic Web: the Neurocommons and beyond.
Harnessing genomics for evolutionary insights
Towards an International Classification for Patient Safety: the conceptual framework
Take two aspirin and tweet me in the morning: how Twitter, Facebook, and other social media are reshaping health care.
Standard Free Energy of Binding from a One-Dimensional Potential of Mean Force
Human genetic variation and its contribution to complex traits.
A census of human transcription factors: function, expression and evolution.
How not to study spontaneous activity.
Parkinson's Disease Patient-Derived Induced Pluripotent Stem Cells Free of Viral Reprogramming Factors
Toward Social Learning Environments
Demonstration of Two-Qubit Algorithms with a Superconducting Quantum Processor
Histone modifications at human enhancers reflect global cell-type-specific gene expression
Screening and Prostate-Cancer Mortality in a Randomized European Study
Visualization of genomic data with the Hilbert curve
Link communities reveal multi-scale complexity in networks
The surprising power of neighborly advice
Lectures on holographic methods for condensed matter physics
Hierarchical Bayesian Nonparametric Models with Applications.
Visualization of the citation impact environments of scientific journals: An online mapping exercise
Scaling the walls of discovery: using semantic metadata for integrative problem solving.
Semantic web for integrated network analysis in biomedicine
TopHat: discovering splice junctions with RNA-Seq
Estimation of allele frequencies from high-coverage genome-sequencing projects.
Optical Deconstruction of Parkinsonian Neural Circuitry
Evaluating Similarity Measures for Emergent Semantics of Social Tagging
Biopython: freely available Python tools for computational molecular biology and bioinformatics.
On the Growth of Scientific Knowledge: Yeast Biology as a Case Study
MicroRNA-125b is a novel negative regulator of p53.
Next-generation DNA sequencing techniques.
Using Network Component Analysis to Dissect Regulatory Networks Mediated by Transcription Factors in Yeast
Current tools for the identification of miRNA genes and their targets.
Lowly expressed human microRNA genes evolve rapidly
Toward accurate reconstruction of functional protein networks
Identification of microRNAs with regulatory potential using a matched microRNA-mRNA time-course data
Search Engines: Information Retrieval in Practice
Infernal 1.0: inference of RNA alignments
KEGGgraph: a graph approach to KEGG PATHWAY in R and bioconductor.
BioconductorBuntu - A Linux Distribution that Implements a Web-Based DNA Microarray Analysis Server
Signals of recent positive selection in a worldwide sample of human populations
An introduction to artificial neural networks in bioinformatics--application to complex microarray and mass spectrometry datasets in cancer studies.
Linking folding and binding.
A Public Management For All Seasons?
Intensive versus conventional glucose control in critically ill patients.
Web page classification: Features and algorithms
Rare Variants of {IFIH1}, a Gene Implicated in Antiviral Responses, Protect Against Type 1 Diabetes
The virtual geographies of social networks: a comparative analysis of Facebook, LinkedIn and ASmallWorld
Random graphs with clustering
A systems approach to prion disease
Bioinformatics analysis of mass spectrometry-based proteomics data sets.
Granger Causality vs Dynamic Bayesian Network Inference: a comparative study
Protein function prediction â€“ the power of multiplicity
Computational and analytical framework for small RNA profiling by high-throughput sequencing
The Unreasonable Effectiveness of Data
Data collection method for pedestrian movement variables
Chloride Penetration into Fiber Reinforced Concrete under Static and Cyclic Compressive Loading
De-anonymizing Social Networks
Prediction of novel microRNA genes in cancer-associated genomic regions--a combined computational and experimental approach
Human mutation rate associated with DNA replication timing.
Accurate Prediction of Peptide Binding Sites on Protein Surfaces
JNets: exploring networks by integrating annotation.
Efficient Drug Lead Discovery and Optimization
Evaluating online learning communities
Evolutionary forces act on promoter length: identification of enriched cis-regulatory elements.
Dark Matter Candidates
Toward a multidisciplinary model of context to support context-aware computing
Biomedical discovery acceleration, with applications to craniofacial development.
FINDSITE: a combined evolution/structure-based approach to protein function prediction
Evaluation of next generation sequencing platforms for population targeted sequencing studies
Lecture notes on the physics of cosmic microwave background anisotropies
Observation of strong coupling between a micromechanical resonator and an optical cavity field
Validation of candidate causal genes for obesity that affect shared metabolic pathways and networks
Quantification of rare allelic variants from pooled genomic DNA.
Global mapping of protein-DNA interactions in vivo by digital genomic footprinting.
Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses
New class of microRNA targets containing simultaneous 5â€²-UTR and 3â€²-UTR interaction sites
Multiagent Systems: Algorithmic, Game-Theoretic, and Logical Foundations
Expression profiling of microRNAs by deep sequencing
{Memories of bug fixes}
A network view of disease and compound screening.
A Yeast Synthetic Network for In Vivo Assessment of Reverse-Engineering and Modeling Approaches
Culture-Brain Interactions
Distilling Free-Form Natural Laws from Experimental Data
The Automation of Science
Creating reference datasets for systems biology applications using text mining.
RNA-Seq-quantitative measurement of expression through massively parallel RNA-sequencing.
A Bipedal DNA Brownian Motor with Coordinated Legs
Understanding the Spreading Patterns of Mobile Phone Viruses
Reliabilities of identifying positive selection by the branch-site and the site-prediction methods
Probing the Flexibility of Large Conformational Changes in Protein Structures through Local Perturbations
Next-Generation Sequencing: From Basic Research to Diagnostics
Scoring diverse cellular morphologies in image-based screens with iterative feedback and machine learning
Progress and challenges in predicting protein-protein interaction sites
Internal coarse-graining of molecular systems
Cosmology of the Lifshitz universe
Heteroaromatic Rings of the Future
Flux balance analysis of biological systems: applications and challenges
mRNA-Seq whole-transcriptome analysis of a single cell
Climate Change
The universal distribution of evolutionary rates of genes and distinct characteristics of eukaryotic genes of different apparent ages
Snowdrift game dynamics and facultative cheating in yeast.
ProbeMatch: rapid alignment of oligonucleotides to genome allowing both gaps and mismatches
The cancer genome
Tissue specificity and the human protein interaction network.
CloudBurst: highly sensitive read mapping with MapReduce
Cross species analysis of microarray expression data.
WebGBrowse--a web server for GBrowse
Extracting the multiscale backbone of complex weighted networks
Microdynamics in stationary complex networks
Sustainable Energy - Without the Hot Air
Protein Dynamism and Evolvability
Information flow analysis of interactome networks.
Trapping Moving Targets with Small Molecules
Coding-sequence determinants of gene expression in Escherichia coli.
Long-timescale molecular dynamics simulations of protein structure and function
Low Cost, Scalable Proteomics Data Analysis Using Amazonâ€™s Cloud Computing Services and Open Source Search Algorithms
Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples
Four stages of a scientific discipline; four types of scientist
Pulsatile stimulation determines timing and specificity of NF-kappaB-dependent transcription.
Evolution of the Caenorhabditis elegans Genome
A sophisticated library search strategy using folksonomies and similarity matching
Non-genetic origins of cell-to-cell variability in TRAIL-induced apoptosis
A Comparison of Approaches to Large-Scale Data Analysis
Comparing Bibliometric Statistics Obtained from the Web of Science and Scopus
Nudge: Improving decisions about health, wealth and happiness
Embryonic stem cellâ€“specific microRNAs promote induced pluripotency
How NOT to review a paper: the tools and techniques of the adversarial reviewer
A Genomic Strategy to Elucidate Modules of Oncogenic Pathway Signaling Networks
Can evolution explain how minds work?
Design of protein-interaction specificity gives selective bZIP-binding peptides
Enzymatic assembly of DNA molecules up to several hundred kilobases.
User language model for collaborative personalized search
MapView: visualization of short reads alignment on a desktop computer
Sequence assembly.
Using movies to analyse gene circuit dynamics in single cells
Many-core algorithms for statistical phylogenetics
Browsing is a Collaborative Process
A MicroRNA Imparts Robustness against Environmental Fluctuation during Development
Transcript length bias in RNA-seq data confounds systems biology
Conservation of core gene expression in vertebrate tissues.
An Introduction to Quantum Error Correction and Fault-Tolerant Quantum Computation
Adventures in Semantic Publishing: Exemplar Semantic Enhancements of a Research Article
Dual-Processing Accounts of Reasoning, Judgment, and Social Cognition
Estimating accuracy of RNA-Seq and microarrays with proteomics.
Validating, augmenting and refining genome-wide association signals
Knowledge Sharing in Organizations: A Conceptual Framework
DNA Binding Site Sequence Directs Glucocorticoid Receptor Structure and Activity
Rapid and accurate multiple testing correction and power estimation for millions of correlated markers.
Nuclear Architecture of Rod Photoreceptor Cells Adapts to Vision in Mammalian Evolution
Linking DNA methylation and histone modification: patterns and paradigms
The Nuclear DNA Base 5-Hydroxymethylcytosine Is Present in Purkinje Neurons and the Brain
Verified design of an automated parking garage
Serial correlation in neural spike trains: Experimental evidence, stochastic modeling, and single neuron variability
FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions
The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation
Standard Quantum Limit for Probing Mechanical Energy Quantization
Bayesian inference of protein-protein interactions from biological literature
A systematic, large-scale resequencing screen of X-chromosome coding exons in mental retardation
Redefining MicroRNA Targets
The role of geography in human adaptation
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line
The regulated retrotransposon transcriptome of mammalian cells
Ranking differentially expressed genes from Affymetrix gene expression data: methods with reproducibility, sensitivity, and specificity
MeSH Up: effective MeSH text classification for improved document retrieval.
Learning to recognize reliable users and content in social media with coupled mutual reinforcement
Collaborative Filtering for Orkut Communities: Discovery of User Latent Behavior
A measurement-driven analysis of information propagation in the flickr social network
Tiny RNAs associated with transcription start sites in animals
A Dynamic Network Approach for the Study of Human Phenotypes
The architecture of mutualistic networks minimizes competition and increases biodiversity
2D molecular graphics: a flattened world of chemistry and biology
Assembling the marine metagenome, one cell at a time.
Microbial community profiling for human microbiome projects: Tools, techniques, and challenges.
Diversity-based, model-guided construction of synthetic gene networks with predicted functions.
Dynamical networks in tRNA:protein complexes
How opinions are received by online communities: a case study on amazon.com helpfulness votes
The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution
Network analysis of collaboration structure in Wikipedia
Phasic firing in dopaminergic neurons is sufficient for behavioral conditioning.
The genetic signatures of noncoding RNAs.
How confident can we be that orthologs are similar, but paralogs differ?
@Note: a workbench for biomedical text mining.
Driving fast-spiking cells induces gamma rhythm and controls sensory responses.
Characterization of ultrashort electromagnetic pulses
Seeking Health Information Online: Does Wikipedia Matter?
Features of mammalian microRNA promoters emerge from polymerase II chromatin immunoprecipitation data.
Survey-based naming conventions for use in OBO Foundry ontology development
Circular analysis in systems neuroscience: the dangers of double dipping.
penalizedSVM: a R-package for feature selection SVM classification.
Nothing about protein structure classification makes sense except in the light of evolution
Near-field cavity optomechanics with nanomechanical oscillators
Software Architecture Design Reasoning: A Case for Improved Methodology Support
Mostly Harmless Econometrics: An Empiricist's Companion
Allelic imbalance sequencing reveals that single-nucleotide polymorphisms frequently alter microRNA-directed repression
Traditional waveform based spike sorting yields biased rate code estimates
Serial time-encoded amplified imaging for real-time observation of fast dynamic phenomena
Autism genome-wide copy number variation reveals ubiquitin and neuronal genes.
Common genetic variants on 5p14.1 associate with autism spectrum disorders
HIV Enters Cells via Endocytosis and Dynamin-Dependent Fusion with Endosomes
The genetic structure and history of Africans and African Americans.
A yeast hybrid provides insight into the evolution of gene expression regulation.
Axiomatic approach to structural design
A differential wiring analysis of expression data correctly identifies the gene containing the causal mutation.
Constructing genomic maps of positive selection in humans: Where do we go from here?
The difficulty of avoiding false positives in genome scans for natural selection
Input-agreement: a new mechanism for collecting data using human computation games
DIANA-microT web server: elucidating microRNA functions through target prediction.
BINDER DRAINAGE TEST FOR POROUS MIXTURES MADE BY VARYING THE MAXIMUM AGGREGATE SIZES
BASIC, ACTUAL AND EFFECTIVENESS OF LEADERSHIP STYLES OF CONSTRUCTION PROJECT MANAGERS IN SURABAYA
Concrete Mix Design Optimized Approach
DESIGN COORDINATION IN DISTRIBUTED ENVIRONMENTS USING VIRTUAL REALITY SYSTEMS
ON REPRESENTING FACTORS INFLUENCING TIME PERFORMANCE OF SHOP-HOUSE CONSTRUCTIONS IN SURABAYA
ROLLER COMPACTED CONCRETE RCC UNTUK BANGUNAN BENDUNGAN
MODELLED MECHANISMS IN THE SLAKE-DURABILITY TEST FOR SOFT ROCKS
SWELLING AND COMPRESSIBILITY CHARACTERISTICS OF SOIL - BENTONITE MIXTURES
PRICING STRATEGY IN THE INDONESIAN CONSTRUCTION INDUSTRY
The gut flora as a forgotten organ.
U-Compare: share and compare text mining tools with UIMA
FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix
MicroRNAs and cancerâ€”new paradigms in molecular oncology
A critical look at cosmological perturbation theory techniques
Self-assembly of a nanoscale DNA box with a controllable lid
Urban Gravity: a Model for Intercity Telecommunication Flows
PEMODELAN PETA TOPOGRAFI KE OBJEK TIGA DIMENSI
PELACAKAN DAN PENGENALAN WAJAH MENGGUNAKAN METODE EMBEDDED HIDDEN MARKOV MODELS
PERANCANGAN DAN PEMBUATAN APLIKASI SISTEM PAKAR UNTUK PERMASALAHAN TINDAK PIDANA TERHADAP HARTA KEKAYAAN
APLIKASI PROGRAM TRANSYT PADA SIMPANG DI BAWAH JENUH Studi Kasus : Simpang Airlangga dan Simpang Udayana Kotamadya Mataram
EVALUASI PENURUNAN TANAH LIAT DENGAN METODE SUB-LAYER
On validation and invalidation of biological models
Context-aware recommender systems
High-throughput genotyping by whole-genome resequencing
BioMart Central Portal--unified access to biological data.
Movement Intention After Parietal Cortex Stimulation in Humans
Representation of confidence associated with a decision by neurons in the parietal cortex.
Strong Coupling of a Mechanical Oscillator and a Single Atom
Tag ranking
SNPinfo: integrating GWAS and candidate gene information into functional SNP selection for genetic association studies.
MicroRNA and mRNA integrated analysis (MMIA): a web tool for examining biological functions of microRNA expression.
Web API for biology with a workflow navigation system.
A Systematic Survey of Program Comprehension through Dynamic Analysis
Infrastructure for the life sciences: design and implementation of the UniProt website
Pairwise maximum entropy models for studying large biological systems: when they can work and when they can't.
Protein ionizable groups: pK values and their contribution to protein stability and solubility.
SNP detection for massively parallel whole-genome resequencing
Reflect: Augmented Browsing for the Life Scientist
Widespread Genomic Signatures of Natural Selection in Hominid Evolution
Drug discovery chemistry: a primer for the non-specialist
SOFIE: A Self-Organizing Framework for Information Extraction
Writing DNA with GenoCADTM
Large-Area Synthesis of High-Quality and Uniform Graphene Films on Copper Foils
Antioxidants prevent health-promoting effects of physical exercise in humans
Recent advances in computer-aided drug design.
Literature-based priors for gene regulatory networks
Correlation of expression profiles between microRNAs and mRNA targets using NCI-60 data
Detecting gene-gene interactions that underlie human diseases
Hypergraph topological quantities for tagged social networks
Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx.
Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays
miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments
INDELible: a flexible simulator of biological sequence evolution.
Metatranscriptomics reveals unique microbial small RNAs in the oceanâ€™s water column
The microbial ocean from genomes to biomes
qiRNA is a new type of small interfering RNA induced by DNA damage
Viruses manipulate the marine environment
Why We Twitter: An Analysis of a Microblogging Community
Exploring the Free Energy Landscape: From Dynamics to Networks and Back
PanGEA: identification of allele specific gene expression using the 454 technology.
Discovery of rare variants via sequencing: implications for the design of complex trait association studies.
A picogram- and nanometre-scale photonic-crystal optomechanical cavity
A hierarchical Bayesian model for comparing transcriptomes at the individual transcript isoform level
A Functional Role for Transposases in a Large Eukaryotic Genome
Diversity and Complexity in DNA Recognition by Transcription Factors
Information Causality as a Physical Principle
BOWiki: an ontology-based wiki for annotation of data and integration of knowledge in biology.
Figure mining for biomedical research
A stimulus to define informatics and health information technology
CHARMM: The biomolecular simulation program
DIANA-mirPath: Integrating human and mouse microRNAs in pathways
Data structures and compression algorithms for genomic sequence data
Beautiful Data: The Stories Behind Elegant Data Solutions
SHRiMP: Accurate Mapping of Short Color-space Reads
Gene tree discordance, phylogenetic inference and the multispecies coalescent
Two types of dopamine neuron distinctly convey positive and negative motivational signals.
Hippocampal theta oscillations are travelling waves
Issues in learning an ontology from text
How to Get the Most out of Your Curation Effort
Modeling and managing experimental data using FuGE.
Drug discovery using chemical systems biology: identification of the protein-ligand binding network to explain the side effects of CETP inhibitors.
MIMAS 3.0 is a Multiomics Information Management and Annotation System.
Hierarchical hidden Markov model with application to joint analysis of ChIP-chip and ChIP-seq data
Fast and accurate short read alignment with Burrows-Wheeler transform.
Mobile elements create structural variation: analysis of a complete human genome.
The idiots guide to Quantum Error Correction
Overlapping pools for high-throughput targeted resequencing.
A HUPO test sample study reveals common problems in mass spectrometry-based proteomics
Make new friends, but keep the old: recommending people on social networking sites
Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes
DNA Sudoku--harnessing high-throughput sequencing for multiplexed specimen analysis.
Biological knowledge management: the emerging role of the Semantic Web technologies
Efficient frequency-based de novo short-read clustering for error trimming in next-generation sequencing
Predicting tie strength with social media
Emerging roles for lipids in shaping membrane-protein function.
Usability evaluation of E-books
Self-assembly of DNA into nanoscale three-dimensional shapes
SNOW, a web-based tool for the statistical analysis of protein-protein interaction networks
The structure and function of G-protein-coupled receptors.
An active registry for bioinformatics web services.
jClust: a clustering and visualization toolbox
Conserved introns reveal novel transcripts in Drosophila melanogaster.
The second wave of synthetic biology: from modules to systems
Multi-tissue coexpression networks reveal unexpected subnetworks associated with disease.
Understanding the Warburg Effect: The Metabolic Requirements of Cell Proliferation
WebLab: a data-centric, knowledge-sharing bioinformatic platform
A Possible Mechanism for Evading Temperature Quantum Decoherence in Living Matter by Feshbach Resonance
The Datacenter as a Computer: An Introduction to the Design of Warehouse-Scale Machines
MicroRNA-92a controls angiogenesis and functional recovery of ischemic tissues in mice.
MEME SUITE: tools for motif discovery and searching.
rtracklayer: an R package for interfacing with genome browsers.
Design analysis of the propulsion and control system of an underactuated remotely operated vehicle using axiomatic design theory - Part 2
Generation of mechanical product conceptual design schemes based on domains structure template
Stochasticity in protein levels drives colinearity of gene order in metabolic operons of Escherichia coli.
GAGE: generally applicable gene set enrichment for pathway analysis.
MirZ: an integrated microRNA expression atlas and target prediction resource
Analyzing miRNA co-expression networks to explore TF-miRNA regulation
Efficient exact motif discovery.
Assessing phylogenetic motif models for predicting transcription factor binding sites
Fewer permutations, more accurate P-values
From disease ontology to disease-ontology lite: statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations
A Humanized Version of Foxp2 Affects Cortico-Basal Ganglia Circuits in Mice
A Classifier-based approach to identify genetic similarities between diseases
Toward a gold standard for promoter prediction evaluation
KELLER: estimating time-varying interactions between genes.
Unstable Tandem Repeats in Promoters Confer Transcriptional Evolvability
The first Korean genome sequence and analysis: Full genome sequencing for a socio-ethnic group
Genome-Wide Identification of Human RNA Editing Sites by Parallel DNA Capturing and Sequencing
The Computation of Social Behavior
Fast statistical alignment.
How and why people Twitter: the role that micro-blogging plays in informal communication at work
Synthetic Gene Networks That Count
What is stochastic resonance? Definitions, misconceptions, debates, and its relevance to biology.
The Cell Cycle Ontology: an application ontology for the representation and integrated analysis of the cell cycle process
Probabilistic retrieval and visualization of biologically relevant microarray experiments
High-frequency, long-range coupling between prefrontal and visual cortex during attention.
Brain Anatomical Network and Intelligence
Genome assembly reborn: recent computational challenges.
Adaptation and the evolution of parasite virulence in a connected world
Topographical and Temporal Diversity of the Human Skin Microbiome
How Many Scientists Fabricate and Falsify Research? A Systematic Review and Meta-Analysis of Survey Data
Aspirin in the primary and secondary prevention of vascular disease: collaborative meta-analysis of individual participant data from randomised trials.
A geometric approach for classification and comparison of structural variants
Epigenetic silencing of transposable elements: A trade-off between reduced transposition and deleterious effects on neighboring gene expression
Advances and pitfalls of protein structural alignment
Discreteâ€“continuous duality of protein structure space
BioPortal: ontologies and integrated data resources at the click of a mouse.
A global meta-analysis of microarray expression data to predict unknown gene functions and estimate the literature-data divide
Impossibility of successful classification when useful features are rare and weak
Improved prediction of defibrillation success for out-of-hospital VF cardiac arrest using wavelet transform methods
Binding of Small-Molecule Ligands to Proteins: â€œWhat You Seeâ€ Is Not Always â€œWhat You Getâ€
Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes.
Community detection in graphs
Seeing the forest for the trees: using the Gene Ontology to restructure hierarchical clustering.
Did Warfare Among Ancestral Hunter-Gatherers Affect the Evolution of Human Social Behaviors?
Monte Carlo methods in statistical physics: Mathematical foundations and strategies
Late Pleistocene Demography and the Appearance of Modern Human Behavior
Pervasive Natural Selection in the Drosophila Genome?
Metabolic-network-driven analysis of bacterial ecological strategies
ABACAS: algorithm-based automatic contiguation of assembled sequences.
Detecting SNPs and estimating allele frequencies in clonal bacterial populations by sequencing pooled DNA
SOAP2: an improved ultrafast tool for short read alignment
Computational methods for discovering gene networks from expression data
Computational methods for the detection of cis-regulatory modules
Enhancing MEDLINE document clustering by incorporating MeSH semantic similarity.
Approaches to neuroscience data integration
The Sequence Alignment/Map format and SAMtools
Identifying regulatory elements in eukaryotic genomes
UTGB toolkit for personalized genome browsers.
Importing ArrayExpress datasets into R/Bioconductor
Uncovering a Macrophage Transcriptional Program by Integrating Evidence from Motif Scanning and Expression Dynamics
Learning, Teaching, and Scholarship in a Digital Age
Junior physician's use of Web 2.0 for information seeking and medical education: A qualitative study
Optomechanical crystals 
The effectiveness of storage and relocation options in renewable energy systems
Text-mining of PubMed abstracts by natural language processing to create a public knowledge base on molecular mechanisms of bacterial enteropathogens.
Potential etiologic and functional implications of genome-wide association loci for human diseases and traits.
Visual and statistical comparison of metagenomes
A clustering approach for identification of enriched domains from histone modification ChIP-Seq data.
Fully homomorphic encryption using ideal lattices
Social and Economic Networks
Identification and analysis of miRNAs in human breast cancer and teratoma samples using deep sequencing.
Integrated assessment of genomic correlates of protein evolutionary rate.
Model criticism based on likelihood-free inference, with an application to protein network evolution
The conservation and evolutionary modularity of metabolism
De novo transcriptome assembly with ABySS
The textual characteristics of traditional and Open Access scientific journals are similar.
A novel and universal method for microRNA RT-qPCR data normalization.
A complex-centric view of protein network evolution
Transcriptome sequencing of the Microarray Quality Control (MAQC) RNA reference samples using next generation sequencing
The Energy Landscape of Social Balance
Hadoop: The Definitive Guide
Towards real-time community detection in large networks
Using Web 2.0 for scientific applications and scientific communities
Detection of single nucleotide variations in expressed exons of the human genome using RNA-Seq
PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating.
Unlocking the secrets of the genome.
DRAM errors in the wild: a large-scale field study
AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading
Backup in gene regulatory networks explains differences between binding and knockout results.
From DNA sequence to transcriptional behaviour: a quantitative approach
Rapid and Accurate Large-Scale Coestimation of Sequence Alignments and Phylogenetic Trees
Nature of the protein universe
Graphene: Status and Prospects
A flexible and accurate genotype imputation method for the next generation of genome-wide association studies.
Argonaute HITS-CLIP decodes microRNAâ€“mRNA interaction maps
Untangling the web of e-Research: Towards a sociology of online knowledge
A fast hybrid short read fragment assembly algorithm
Circos: An information aesthetic for comparative genomics
Activity-based computing for medical work in hospitals
YouTube: Online Video and Participatory Culture
VarScan: variant detection in massively parallel sequencing of individual and pooled samples
Adaptive prediction of environmental changes by microorganisms
OrthoClusterDB: an online platform for synteny blocks
Estimates of Positive Darwinian Selection Are Inflated by Errors in Sequencing, Annotation, and Alignment
Evolution of Phosphoregulation: Comparison of Phosphorylation Patterns across Yeast Species
Genome-wide association studies, field synopses, and the development of the knowledge base on genetic variation and human diseases.
Swift: primary data analysis for the Illumina Solexa sequencing platform
Filtering Genes for Cluster and Network Analysis
Fast. Cheap and Creative: Evaluating Translation Quality Using Amazonâ€™s Mechanical Turk
Current-generation high-throughput sequencing: deepening insights into mammalian transcriptomes.
Extracting transcription factor targets from ChIP-Seq data
SHREC: a short-read error correction method
Increasing the coverage of a metapopulation consensus genome by iterative read mapping and assembly.
HadoopDB: An Architectural Hybrid of MapReduce and DBMS Technologies for Analytical Workloads
Search User Interfaces
Identifying Relationships among Genomic Disease Regions: Predicting Genes at Pathogenic SNP Associations and Rare Deletions
Cloud computing and emerging IT platforms: Vision, hype, and reality for delivering computing as the 5th utility
A Walk in Facebook: Uniform Sampling of Users in Online Social Networks
Data publication: towards a database of everything
Motivating Online Publication of Data
Fitness and its role in evolutionary genetics
Dynamics of transposable elements: towards a community ecology of the genome.
Visualising biological data: a semantic approach to tool and database integration
Linked Data - The Story So Far
A Bayesian approach to efficient differential allocation for resampling-based significance testing.
libAnnotationSBML: a library for exploiting SBML annotations
Clustered microRNAs' coordination in regulating protein-protein interaction network.
Individual and social behavior in tagging systems
Integrated analysis of DNA copy number and gene expression microarray data using gene sets
Global distribution of conformational states derived from redundant models in the PDB points to non-uniqueness of the protein structure
Evaluating the Effectiveness of Personalized Web Search
Comparison of sequence-dependent tiling array normalization approaches
Social search and discovery using a unified approach
Context-based ranking in folksonomies
Contextualising tags in collaborative tagging systems
Social recommender systems for web 2.0 folksonomies
Citing and Reading Behaviours in High-Energy Physics. How a Community Stopped Worrying about Journals and Learned to Love Repositories
The common colorectal cancer predisposition SNP rs6983267 at chromosome 8q24 confers potential to enhanced Wnt signaling
Genome-wide allele- and strand-specific expression profiling.
The building blocks of economic complexity
JBrowse: a next-generation genome browser.
Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression.
Unite and conquer: univariate and multivariate approaches for finding differentially expressed gene sets.
How to think, say, or do precisely the worst thing for any occasion.
Role of Layer 6 of V2 Visual Cortex in Object-Recognition Memory
Meme-tracking and the dynamics of the news cycle
Single nucleotide polymorphism arrays: a decade of biological, computational and technological advances.
Using reads to annotate the genome: influence of length, background distribution, and sequence errors on prediction capacity
The Gene Ontology's Reference Genome Project: A Unified Framework for Functional Annotation across Species
The Peter principle revisited: A computational study
A synthetic genetic edge detection program.
Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads
Diffusion of scientific credits and the ranking of scientists
Personalization of Tagging Systems
Elucidating regulatory mechanisms downstream of a signaling pathway using informative experiments
Informal learning and identity formation in online social networks
<i>Facebook</i>, social integration and informal learning at university: Â‘It is more for socialising and talking to friends about work than for actually doing workÂ’
Synergistic drug combinations tend to improve therapeutically relevant selectivity
Fifteen years of microbial genomics: meeting the challenges and fulfilling the dream
From VLEs to learning webs: the implications of Web 2.0 for learning and teaching
Rapamycin fed late in life extends lifespan in genetically heterogeneous mice
Catastrophic cascade of failures in interdependent networks
puma: a Bioconductor package for propagating uncertainty in microarray analysis
Quantification of the yeast transcriptome by single-molecule sequencing.
Drug Discovery and Natural Products: End of an Era or an Endless Frontier?
Motif composition, conservation and condition-specificity of single and alternative transcription start sites in the Drosophila genome
Common variants conferring risk of schizophrenia
Partial penetrance facilitates developmental evolution in bacteria
A highly annotated whole-genome sequence of a Korean individual
Evidence for human microRNA-offset RNAs in small RNA sequencing data
General rules for optimal codon choice.
Intrinsic protein disorder and interaction promiscuity are widely associated with dosage sensitivity.
Positive selection of tyrosine loss in metazoan evolution.
Collaborative filtering with temporal dynamics
Quantum Walk in Position Space with Single Optically Trapped Atoms
Common polygenic variation contributes to risk of schizophrenia and bipolar disorder.
Dark Matter Astrophysics
RazerSâ€”fast read mapping with sensitivity control
Next-generation tag sequencing for cancer gene expression profiling.
Quantitative assessment of the expanding complementarity between public and commercial databases of bioactive compounds
Tagommenders: connecting users to items through tags
What controls nucleosome positions?
Impact of Human Activity Patterns on the Dynamics of Information Diffusion
Mapping change in large networks
Identification of rare cancer driver mutations by network reconstruction
<i>TrustWalker</i>: a random walk model for combining trust-based and item-based recommendation
High-resolution mapping and analysis of copy number variations in the human genome: a data resource for clinical and research applications.
The ClinSeq Project: Piloting large-scale genome sequencing for research in genomic medicine
WebArrayDB: cross-platform microarray data analysis and public data repository
Comparative study on ChIP-seq data: normalization and binding pattern characterization
Annotation of SBML Models Through Rule-Based Semantic Integration
The genome of the blood fluke Schistosoma mansoni.
Global patterns of speciation and diversity
A probabilistic approach for SNP discovery in high-throughput human resequencing data
Mechanisms of change in gene copy number
Probabilistic resolution of multi-mapping reads in massively parallel sequencing data using MuMRescueLite
OrthoSelect: a protocol for selecting orthologous groups in phylogenomics
Identification of deleterious mutations within three human genomes
The central memory CD4+ T cell population generated during Leishmania major infection requires IL-12 to produce IFN-gamma.
{Search for a 'Tree of Life' in the thicket of the phylogenetic forest.}
College students' social networking experiences on Facebook
An introduction to scripting in Ruby for biologists.
A strand-specific RNA-Seq analysis of the transcriptome of the typhoid bacillus Salmonella typhi.
The genetics of quantitative traits: challenges and prospects.
Foundations for a new science of learning.
Targeted retrieval and analysis of five Neandertal mtDNA genomes.
Using R in Taverna: RShell v1.2
Dyslexia: a new synergy between education and cognitive neuroscience.
Rapid detection, classification and accurate alignment of up to a million or more related protein sequences
Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding
Lysine Acetylation Targets Protein Complexes and Co-Regulates Major Cellular Functions
Protein-DNA Interactions: Principles and Protocols (Methods in Molecular Biology)
The SNP ratio test: pathway analysis of genome-wide association datasets.
Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt.
The evolution of protein domain families.
Recovering time-varying networks of dependencies in social and biological studies
Quantitative phenotyping via deep barcode sequencing.
Comments on the analysis of unbalanced microarray data.
Caleydo: connecting pathways and gene expression
Statistical significance of communities in networks
Modulation of microRNA processing by p53
Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data.
Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions
The PRISMA Statement for Reporting Systematic Reviews and Meta-Analyses of Studies That Evaluate Health Care Interventions: Explanation and Elaboration
Scale-Free Networks: A Decade and Beyond
Transcriptional Regulatory Circuits: Predicting Numbers from Alphabets
The pathologies of big data
Transcriptome analysis by strand-specific sequencing of complementary DNA.
How citation distortions create unfounded authority: analysis of a citation network.
Economic Networks: The New Challenges
Disentangling the Web of Life
Predicting the Behavior of Techno-Social Systems
Identification of a topological characteristic responsible for the biological robustness of regulatory networks.
Programming cells by multiplex genome engineering and accelerated evolution
Dragon-Kings, Black Swans and the Prediction of Crises
A statistical comparison of tag and query logs
Personalized tag recommendation using graph-based ranking on multi-type interrelated objects
BSMAP: whole genome bisulfite sequence MAPping program
A modified LOESS normalization applied to microRNA arrays: a comparative evaluation
Relationship between gene co-expression and sharing of transcription factor binding sites in Drosophila melanogaster
Pathway databases and tools for their exploitation: benefits, current limitations and challenges
A realistic assessment of methods for extracting gene/protein interactions from free text.
On social networks and collaborative recommendation
The wisdom of the few: a collaborative filtering approach based on expert opinions from the web
H3.3/H2A.Z double variantâ€“containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions
Mapping Accuracy of Short Reads from Massively Parallel Sequencing and the Implications for Quantitative Expression Profiling
TableButler - a Windows based tool for processing large data tables generated with high-throughput methods.
CLEAN: CLustering Enrichment ANalysis.
Mining Biological Pathways Using WikiPathways Web Services
Complexity: A Guided Tour
Predicting user interests from contextual information
Nucleosomal Fluctuations Govern the Transcription Dynamics of RNA Polymerase II
Context-aware query classification
Semantic Similarity in Biomedical Ontologies
Building disease-specific drug-protein connectivity maps from molecular interaction networks and PubMed abstracts.
Common regulatory variation impacts gene expression in a cell type-dependent manner.
A Quick Guide to Organizing Computational Biology Projects
Upcoming challenges for multiple sequence alignment methods in the high-throughput era
RNA-MATE: a recursive mapping strategy for high-throughput RNA-sequencing data.
Replica exchange with nonequilibrium switches
Maximum likelihood genome assembly.
Recent progress in the biology and physiology of sirtuins
Comparison of next generation sequencing technologies for transcriptome characterization
Gene ranking and biomarker discovery under correlation.
Network analyses in systems pharmacology
Uniting pattern and process in plant-animal mutualistic networks: a review
Library 2.0: balancing the risks and benefits to maximise the dividends
Rebuilding Global Fisheries
Positional Effects on Citation and Readership in arXiv
What happens when facebook is gone?
Web 2.0 use by librarians
A General Framework for Analyzing Sustainability of Social-Ecological Systems
Distinguishing direct versus indirect transcription factorâ€“DNA interactions
Scaling laws of human interaction activity
Interaction between intrinsically disordered proteins frequently occurs in a human protein-protein interaction network.
Lectures on String Theory
Innovation communities: the role of networks of promotors in Open Innovation
PubMed-EX: a web browser extension to enhance PubMed search with text mining features.
The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets
ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data.
Architecture and secondary structure of an entire HIV-1 RNA genome
The economy needs agent-based modelling
Modelling to contain pandemics
Twitter power: Tweets as electronic word of mouth
Recurring mutations found by sequencing an acute myeloid leukemia genome.
Multi-level learning: improving the prediction of protein, domain and residue interactions by allowing information flow between levels
Improving detection of differentially expressed gene sets by applying cluster enrichment analysis to Gene Ontology.
GWAS meets microarray: are the results of genome-wide association studies and gene-expression profiling consistent? Prostate cancer as an example.
Genetics of human gene expression: mapping DNA variants that influence gene expression.
A new look at state-space models for neural data
Reinventing academic publishing online. Part I: Rigor, relevance and practice
Human disease-drug network based on genomic expression profiles.
R/BHC: fast Bayesian hierarchical clustering for microarray data.
BayesCall: A model-based base-calling algorithm for high-throughput short-read sequencing
Geometric De-noising of Protein-Protein Interaction Networks
Evolutionary Processes Acting on Candidate cis-Regulatory Regions in Humans Inferred from Patterns of Polymorphism and Divergence
{Topic models conditioned on arbitrary features with Dirichletmultinomial regression}
The Systems Biology Graphical Notation
Systematic artifacts in metagenomes from complex microbial communities
Sensitive and accurate detection of copy number variants using read depth of coverage
Development of biomarker classifiers from high-dimensional data.
Experience sampling during fMRI reveals default network and executive system contributions to mind wandering
Opinion and community formation in coevolving networks
Community detection algorithms: a comparative analysis
Small Molecule Subgraph Detector (SMSD) toolkit
Biological pathways as communicating computer systems
Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models.
Learning to Rank for Information Retrieval
PineSAP--sequence alignment and SNP identification pipeline.
Single-molecule sequencing of an individual human genome
Accurate determination of microbial diversity from 454 pyrosequencing data
BreakDancer: an algorithm for high-resolution mapping of genomic structural variation
Insights from genomic profiling of transcription factors
Microfluidic devices for measuring gene network dynamics in single cells
Representations in auditory cortex
PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seeds
Sleep viewed as a state of adaptive inactivity
Identification of Selective Inhibitors of Cancer Stem Cells by High-Throughput Screening
Effective Field Theory, Past and Future
Strategic reading, ontologies, and the future of scientific publishing.
Massively Parallel Sequencing: The Next Big Thing in Genetic Medicine
seL4: Formal Verification of an {OS} Kernel
Automatic Spike Sorting Using Tuning Information.
LookSeq: a browser-based viewer for deep sequencing data.
Four distances between pairs of amino acids provide a precise description of their interaction.
Improved base calling for the Illumina Genome Analyzer using machine learning strategies
A Parsimony Approach to Biological Pathway Reconstruction/Inference for Genomes and Metagenomes
Long-range regulation is a major driving force in maintaining genome integrity
An XML transfer schema for exchange of genomic and genetic mapping data: implementation as a web service in a Taverna workflow.
R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips
Moderated effect size and P-value combinations for microarray meta-analyses.
Targeted capture and massively parallel sequencing of 12 human exomes.
Quantifying Correlations Between Allosteric Sites in Thermodynamic Ensembles.
Pregel: a system for large-scale graph processing
Demonstration of a spaser-based nanolaser
The origin of allosteric functional modulation: multiple pre-existing pathways.
Inferring friendship network structure by using mobile phone data
Nucleosomes are well positioned in exons and carry characteristic histone modifications.
Perspectives on social tagging
Genetics in geographically structured populations: defining, estimating and interpreting FST
Applying mass spectrometry-based proteomics to genetics, genomics and network biology
Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture
Mobyle: a new full web bioinformatics framework.
Conformational selection or induced fit: A flux description of reaction mechanism
The Multikernel: A New OS Architecture for Scalable Multicore Systems
Combining an Elastic Network With a Coarse-Grained Molecular Force Field: Structure, Dynamics, and Intermolecular Recognition
Statistical methods for gene set co-expression analysis
TargetMiner: microRNA target prediction with systematic identification of tissue-specific negative examples
Parametric Complexity of Sequence Assembly: Theory and Applications to Next Generation Sequencing
Comparative Analysis of Pyrosequencing and a Phylogenetic Microarray for Exploring Microbial Community Structures in the Human Distal Intestine
Creating bacterial strains from genomes that have been cloned and engineered in yeast.
p3d - Python module for structural bioinformatics
A mapping of drug space from the viewpoint of small molecule metabolism.
Protein Sectors: Evolutionary Units of Three-Dimensional Structure
The intrinsic dynamics of enzymes plays a dominant role in determining the structural changes induced upon inhibitor binding
Community-wide analysis of microbial genome sequence signatures.
Combinatorial network of primary and secondary microRNA-driven regulatory mechanisms.
Impact of Chromatin Structures on DNA Processing for Genomic Analyses
ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes
Genome-wide Mapping of HATs and HDACs Reveals Distinct Functions in Active and Inactive Genes
Cognitive control in media multitaskers
The impact factor's Matthew effect: a natural experiment in bibliometrics
Independent evolution of knuckle-walking in African apes shows that humans did not evolve from a knuckle-walking ancestor.
Evaluation of PubMed filters used for evidence-based searching: validation using relative recall.
QUBIC: a qualitative biclustering algorithm for analyses of gene expression data.
integrOmics: an R package to unravel relationships between two omics datasets.
Benchmarking Next-Generation Transcriptome Sequencing for Functional and Evolutionary Genomics
Widespread Shortening of 32UTRs by Alternative Cleavage and Polyadenylation Activates Oncogenes in Cancer Cells
Cooperative Behavior Cascades in Human Social Networks
Fast nonparametric matrix factorization for large-scale collaborative filtering
SubpathwayMiner: a software package for flexible identification of pathways
Assisted assembly: how to improve a de novo genome assembly by using related species
Generating Coherent Patterns of Activity from Chaotic Neural Networks
The Chemical Structure of a Molecule Resolved by Atomic Force Microscopy
Complete Resequencing of 40 Genomes Reveals Domestication Events and Genes in Silkworm (Bombyx)
The origins of lactase persistence in Europe.
Analyzing patterns of user content generation in online social networks
Social influence analysis in large-scale networks
Human Y Chromosome Base-Substitution Mutation Rate Measured by Direct Sequencing in a Deep-Rooting Pedigree
Mapping accessible chromatin regions using Sono-Seq.
A novel algorithm for detecting differentially regulated paths based on gene set enrichment analysis.
Reproducibility of quantitative RT-PCR array in miRNA expression profiling and comparison with microarray analysis.
Defining Network Topologies that Can Achieve Biochemical Adaptation
Cloud computing: A new business paradigm for biomedical information sharing
Targets of Balancing Selection in the Human Genome
Personalized copy number and segmental duplication maps using next-generation sequencing.
Exploring repetitive DNA landscapes using REPCLASS, a tool that automates the classification of transposable elements in eukaryotic genomes.
Computation of conformational coupling in allosteric proteins.
Detection of Functional Modes in Protein Dynamics
Online Learning for Matrix Factorization and Sparse Coding
An ensemble model of competitive multi-factor binding of the genome
Chromatin poises miRNA- and protein-coding genes for expression
Edge Direction and the Structure of Networks
Where Do Good Innovation Ideas Come From? Exploring the Influence of Network Connectivity on Innovation Idea Quality
Efficient free energy calculations for compounds with multiple stable conformations separated by high energy barriers.
mRNA expression profiles show differential regulatory effects of microRNAs between estrogen receptor-positive and estrogen receptor-negative breast cancer.
Medical professionalism in the age of online social networking
Comparative study of gene set enrichment methods.
Comparison of Registered and Published Primary Outcomes in Randomized Controlled Trials
Early-warning signals for critical transitions
Recent de novo origin of human protein-coding genes
Physics of laser-driven plasma-based electron accelerators
Copy number variation in human health, disease, and evolution.
From gene expression to gene regulatory networks in Arabidopsis thaliana
Functional Characterization of the Antibiotic Resistance Reservoir in the Human Microflora
Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates.
Genome-wide prioritization of disease genes and identification of disease-disease associations from an integrated human functional linkage network.
Broad and potent neutralizing antibodies from an African donor reveal a new HIV-1 vaccine target.
Analyzing biological network parameters with CentiScaPe
Unbiased reconstruction of a mammalian transcriptional network mediating pathogen responses.
Positive Interactions Promote Public Cooperation
XMPP for cloud computing in bioinformatics supporting discovery and invocation of asynchronous web services
Shor's Quantum Factoring Algorithm on a Photonic Chip
Googling Food Webs: Can an Eigenvector Measure Species' Importance for Coextinctions?
A combinatorial approach to detect coevolved amino acid networks in protein families of variable divergence.
Genome-wide association study identifies variants at CLU and PICALM associated with Alzheimer's disease.
6 Lectures on QFT, RG and SUSY
The information paradox: A pedagogical introduction
Updates to the RMAP short-read mapping software
Efficiently finding genome-wide three-way gene interactions from transcript- and genotype-data.
Broken Promises of Privacy: Responding to the Surprising Failure of Anonymization
Toward Quantum Superposition of Living Organisms
TagDust--a program to eliminate artifacts from next generation sequencing data
Marine natural products
ChIP-seq: advantages and challenges of a maturing technology.
Molecular networks as sensors and drivers of common human diseases
Genomic views of distant-acting enhancers
The logic of chromatin architecture and remodelling at promoters.
Defining mechanisms that regulate RNA polymerase II transcription in vivo
Web 2.0 goes academia: does Web 2.0 make a difference?
Comparisons of Citations in Web of Science, Scopus, and Google Scholar for Articles Published in General Medical Journals
Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans
Genome-wide identification of post-translational modulators of transcription factor activity in human B cells
Species Tree Inference by Minimizing Deep Coalescences
Fast Mapping of Short Sequences with Mismatches, Insertions and Deletions Using Index Structures
De novo computational prediction of non-coding RNA genes in prokaryotic genomes
Bacteria as computers making computers
Data clustering: 50 years beyond K-means
De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data
Quantitative miRNA expression analysis: Comparing microarrays with next-generation sequencing
A high throughput experimental approach to identify miRNA targets in human cells.
Comparative genomics of protoploid Saccharomycetaceae.
RNAi in budding yeast.
Design Parameters to Control Synthetic Gene Expression in Escherichia coli
The relationship between the evolution of microRNA targets and the length of their UTRs
Spatiotemporal control of cell signalling using a light-switchable protein interaction
Opportunistic pathogens enriched in showerhead biofilms
The Gene Wiki: community intelligence applied to human gene annotation.
Disease signatures are robust across tissues and experiments
Gene networks in Drosophila melanogaster: integrating experimental data to predict gene function.
Automated seeding of specialised wiki knowledgebases with BioKb.
Repertoire and evolution of miRNA genes in four divergent nematode species
Gene therapy for redÃ¢Â€Â“green colour blindness in adult primates
The origin and evolution of synapses
Human gut microbiome adopts an alternative state following small bowel transplantation
Three-dimensional structural view of the central metabolic network of Thermotoga maritima.
Relative power and sample size analysis on gene expression profiling data.
Simultaneous alignment of short reads against multiple genomes
Identifiability of isoform deconvolution from junction arrays and RNA-Seq
Bayesian statistical methods for genetic association studies
Accurate microRNA target prediction correlates with protein repression levels
Evolution of the neocortex: a perspective from developmental biology
Selective suppression of hippocampal ripples impairs spatial memory
A dictionary to identify small molecules and drugs in free text
Applications of New Sequencing Technologies for Transcriptome Analysis
Design Challenges and Misconceptions in Named Entity Recognition
Causes and consequences of microRNA dysregulation in cancer
Client-side integration of life science literature resources.
Human miRNA Precursors with Box H/ACA snoRNA Features
{Repositorios de publicaciones digitales de libre acceso en Europa: an{Ã¡}lisis y valoraci{Ã³}n de la accesibilidad, posicionamiento web y calidad del c{Ã³}digo}
Empirical Study of Data Sharing by Authors Publishing in PLoS Journals
PhyloPattern: regular expressions to identify complex patterns in phylogenetic trees
BayesPeak: Bayesian analysis of ChIP-seq data
Reproducing the manual annotation of multiple sequence alignments using a SVM classifier.
A weak lensing detection of a deviation from General Relativity on cosmic scales
Structural and functional constraints in the evolution of protein families
Relative contribution of sequence and structure features to the mRNA binding of Argonaute/EIF2C-miRNA complexes and the degradation of miRNA targets.
Reconstructing Indian population history
Direct RNA sequencing
SSWAP: A Simple Semantic Web Architecture and Protocol for semantic web services.
Online posting of unprofessional content by medical students.
An epistatic ratchet constrains the direction of glucocorticoid receptor evolution
On Universality in Human Correspondence Activity
Conserved expression patterns predict microRNA targets.
Social tagging in the life sciences: characterizing a new metadata resource for bioinformatics.
Finding structure with randomness: Stochastic algorithms for constructing approximate matrix decompositions
How To Choose a Good Scientific Problem
Making Augmented Reality Practical on Mobile Phones, Part 1
galign: A Tool for Rapid Genome Polymorphism Discovery
No Natives Here: A Focus Group Study of Student Perceptions of Web 2.0 and the Academic Library
Multiscale Modeling of Proteins
Exploration of Uncharted Regions of the Protein Universe
TransmiR: a transcription factor-microRNA regulation database.
Automatically classifying sentences in full-text biomedical articles into Introduction, Methods, Results and Discussion
GoWeb: a semantic search engine for the life science web.
BioGateway: a semantic systems biology tool for the life sciences.
Estrategia para mejorar la difusiÃ³n de los resultados de investigaciÃ³n con la Web 2.0
Google Scholar como herramienta para la evaluaciÃ³n cientÃ­fica
Gestores de referencias de Ãºltima generaciÃ³n: anÃ¡lisis comparativo de RefWorks, EndNote Web y Zotero
Lost in translation: an assessment and perspective for computational microRNA target identification.
Lenguajes documentales y ontologÃ­as
Web semÃ¡ntica y ontologÃ­as en el procesamiento de la informaciÃ³n documental
IntroducciÃ³n al anÃ¡lisis de redes
Whole-genome phylogeny of mammals: Evolutionary information in genic and nongenic regions
Coexpression network based on natural variation in human gene expression reveals gene interactions and functions
ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads
The performance of modularity maximization in practical contexts
Unsupervised statistical clustering of environmental shotgun sequences.
Ribosomal Protein S6 Kinase 1 Signaling Regulates Mammalian Life Span
The Modular Organization of Protein Interactions in Escherichia coli
The powerful law of the power law and other myths in network biology
Enhancing navigation in biomedical databases by community voting and database-driven text classification
A new statistic and its power to infer membership in a genome-wide association study using genotype frequencies
Phylogenomics of primates and their ancestral populations
Mendeley - A Last.fm For Research?
Automated design of synthetic ribosome binding sites to control protein expression
Horizontal Gene Transfer of the Secretome Drives the Evolution of Bacterial Cooperation and Virulence
Structuring and extracting knowledge for the support of hypothesis generation in molecular biology.
Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution.
Finding the missing heritability of complex diseases
A genome-wide linkage and association scan reveals novel loci for autism
BIRI: a new approach for automatically discovering and indexing available public bioinformatics resources from the literature
Origins and functional impact of copy number variation in the human genome
Genomic DNA k-mer spectra: models and modalities.
Characterizing natural variation using next-generation sequencing technologies.
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
Reactome Array: Forging a Link Between Metabolome and Genome
Multi-dimensional correlations for gene coexpression and application to the large-scale data of Arabidopsis
Towards a Mathematical Theory of Cortical Micro-circuits
Detection of an Infectious Retrovirus, XMRV, in Blood Cells of Patients with Chronic Fatigue Syndrome
Structure-Based Predictive Models for Allosteric Hot Spots
High-Performance Drug Discovery: Computational Screening by Combining Docking and Molecular Dynamics Simulations
KEGGconverter: a tool for the in-silico modelling of metabolic networks of the KEGG Pathways database.
HMMCONVERTER 1.0: a toolbox for hidden Markov models
Energy, economics and environmental impacts of renewable energy systems
miRExpress: Analyzing high-throughput sequencing data for profiling microRNA expression
PLAST: parallel local alignment search tool for database comparison
BASE - 2nd generation software for microarray data management and analysis
How to identify essential genes from molecular networks?
Predicting citation count of Bioinformatics papers within four years of publication
Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data
Windshield splatter analysis with the Galaxy metagenomic pipeline
The NIH Human Microbiome Project.
Detailing regulatory networks through large scale data integration.
Electrophysiology in the age of light.
Phylogenetic analysis of modularity in protein interaction networks
Human DNA methylomes at base resolution show widespread epigenomic differences.
Neuroscience in the era of functional genomics and systems biology.
STARNET 2: a web-based tool for accelerating discovery of gene regulatory networks using microarray co-expression data.
Magallanes: a web services discovery and automatic workflow composition tool
A wave of nascent transcription on activated human genes.
Users of the world, unite! The challenges and opportunities of Social Media
Sequential Processing of Lexical, Grammatical, and Phonological Information Within Broca's Area
Classification and biomarker identification using gene network modules and support vector machines
The value of using short-format podcasts to enhance learning and teaching
A Genealogical Interpretation of Principal Components Analysis
Genome evolution and adaptation in a long-term experiment with Escherichia coli
Global patterns of cis variation in human cells revealed by high-density allelic expression analysis
How to understand the cell by breaking it: network analysis of gene perturbation screens
Spatial patterns of variation due to natural selection in humans.
Experimental determination of the evolvability of a transcription factor.
The theory of discovering rare variants via DNA sequencing.
Arabidopsis gene co-expression network and its functional modules
Imaging chromophores with undetectable fluorescence by stimulated emission microscopy
Single-Trial Phase Precession in the Hippocampus
High-resolution nucleosome mapping reveals transcription-dependent promoter packaging.
The gputools package enables GPU computing in R
Networks, Crowds, and Markets: Reasoning About a Highly Connected World
Evolution of biomolecular networks: lessons from metabolic and protein interactions.
What can metabolomics learn from genomics and proteomics?
Construction of an annotated corpus to support biomedical information extraction
Annotation Confidence Score for Genome Annotation: A Genome Comparison Approach
DEGseq: an R package for identifying differentially expressed genes from RNA-seq data
NGSView: an extensible open source editor for next-generation sequencing data.
SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building
The Universal Protein Resource (UniProt) in 2010
miRGen 2.0: a database of microRNA genomic information and regulation.
Genome-wide mapping of alternative splicing in Arabidopsis thaliana
phyloXML: XML for evolutionary biology and comparative genomics
Hypersensitivity to contact inhibition provides a clue to cancer resistance of naked mole-rat.
Genetic diagnosis by whole exome capture and massively parallel DNA sequencing
The GNUMAP algorithm: unbiased probabilistic mapping of oligonucleotides from next-generation sequencing
Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing
The role of DNA shape in protein
ArrayMining: a modular web-application for microarray analysis combining ensemble and consensus methods with cross-study normalization.
Analysis and comparison of very large metagenomes with fast clustering and functional annotation
Detection of nonneutral substitution rates on mammalian phylogenies
Baryon Acoustic Oscillations
Oscillations, Phase-of-Firing Coding, and Spike Timing-Dependent Plasticity: An Efficient Learning Scheme
Head in the clouds: Re-imagining the experimental laboratory record for the web-based networked world
Profiling the Human Protein-DNA Interactome Reveals ERK2 as a Transcriptional RepressorÂ of Interferon Signaling
BARCRAWL and BARTAB: software tools for the design and implementation of barcoded primers for highly multiplexed DNA sequencing.
Models for financial sustainability of biological databases and resources
Structure of Protein Interaction Networks and Their Implications on Drug Design
Intergenerational Wealth Transmission and the Dynamics of Inequality in Small-Scale Societies
Computational methods for discovering structural variation with next-generation sequencing
Sense from sequence reads: methods for alignment and assembly
Computation for ChIP-seq and RNA-seq studies
Improved Attribution of Climate Forcing to Emissions
Computer-aided design of functional protein interactions
Low complexity voice recognition in car environment
RNA-seq: from technology to biology.
Can literature analysis identify innovation drivers in drug discovery?
Next-generation gap
Prediction of hot spot residues at protein-protein interfaces by combining machine learning and energy-based methods
inGAP: an integrated next-generation genome analysis pipeline
Predicting new molecular targets for known drugs.
Using twitter to recommend real-time topical news
Edgetic perturbation models of human inherited disorders.
Energetics of Displacing Water Molecules from Protein Binding Sites: Consequences for Ligand Optimization
Common disorders are quantitative traits
Non-coding RNAs: regulators of disease
Applications of genome-scale metabolic reconstructions
Experimental evolution of bet hedging 
Combinatorial binding predicts spatio-temporal cis-regulatory activity 
An oestrogen-receptor-&agr;-bound human chromatin interactome
OntologÃ­as y organizaciÃ³n del conocimiento: retos y oportunidades para el profesional de la informaciÃ³n
Soft colloids make strong glasses
Ensembl genomes: Extending ensembl across the taxonomic space
KEGG for representation and analysis of molecular networks involving diseases and drugs.
Human Genome Sequencing Using Unchained Base Reads on Self-Assembling DNA Nanoarrays
Ten Simple Rules for Searching and Organizing the Scientific Literature
Cross-Product Extensions of the Gene Ontology 
Bacterial Community Variation in Human Body Habitats Across Space and Time
Genome 10K: a proposal to obtain whole-genome sequence for 10,000 vertebrate species.
Memento: Time Travel for the Web
Microdroplet-based PCR enrichment for large-scale targeted sequencing
The challenges of sequencing by synthesis
The transcription unit architecture of the Escherichia coli genome
Catalogues of mammalian long noncoding RNAs: modest conservation and incompleteness
Concordant regulation of translation and mRNA abundance for hundreds of targets of a human microRNA.
Identification of microRNA activity by Targets' Reverse EXpression.
Scratchpads: a data-publishing framework to build, share and manage information on the diversity of life.
BFAST: An Alignment Tool for Large Scale Genome Resequencing
Synthetic biology: understanding biological design from synthetic circuits
Direct cell reprogramming is a stochastic process amenable to acceleration 
Human-specific transcriptional regulation of CNS development genes by FOXP2.
Pathway projector: web-based zoomable pathway browser using KEGG atlas and Google Maps API.
The challenges of informatics in synthetic biology: from biomolecular networks to artificial organisms
Collaborative filtering for social tagging systems: an experiment with CiteULike
The effect of sequencing errors on metagenomic gene prediction
Co-expression networks: graph properties and topological comparisons.
Revisiting Date and Party Hubs: Novel Approaches to Role Assignment in Protein Interaction Networks
Community Structure in Time-Dependent, Multiscale, and Multiplex Networks
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles
Exome sequencing identifies the cause of a mendelian disorder
Reproducibility Distinguishes Conscious from Nonconscious Neural Representations
Computational Identification of Slow Conformational Fluctuations in Proteins
The Leading Sense: Supramodal Control of Neurophysiological Context by Attention
BioGPS: an extensible and customizable portal for querying and organizing gene annotation resources
Seeing Science
The ontology of biological sequences.
mimiRNA: a microRNA expression profiler and classification resource designed to identify functional correlations between microRNAs and their targets
Annotation and merging of SBML models with semanticSBML
Systems-level dynamic analyses of fate change in murine embryonic stem cells
The complex eukaryotic transcriptome: unexpected pervasive transcription and novel small RNAs
Horizontal gene transfer in evolution: facts and challenges
PyCUDA: GPU Run-Time Code Generation for High-Performance Computing
Frequency of gamma oscillations routes flow of information in the hippocampus.
Biology's first law : the tendency for diversity and complexity to increase in evolutionary systems
The B73 maize genome: complexity, diversity, and dynamics.
Journal maps on the basis of Scopus data: A comparison with the Journal Citation Reports of the ISI
Gene Expression Atlas at the European Bioinformatics Institute
The Gene Ontology in 2010: extensions and refinements.
CTCF binding site classes exhibit distinct evolutionary, genomic, epigenomic and transcriptomic features
De novo sequencing of plant genomes using second-generation technologies
Is evolution Darwinian or/and Lamarckian?
On the diversity of physicochemical environments experienced by identical ligands in binding pockets of unrelated proteins.
Searching for SNPs with cloud computing
The foundation of the concept of relevance
Trends in the sources and sinks of carbon dioxide
Strategies for cellular decision-making
AQUA: automated quality improvement for multiple sequence alignments
Attention improves performance primarily by reducing interneuronal correlations
Iterative Pruning PCA Improves Resolution of Highly Structured Populations
Combining next-generation pyrosequencing with microarray for large scale expression analysis in non-model species.
Polymerase chain reaction primers miss half of rRNA microbial diversity.
A nonparametric view of network models and Newmanâ€“Girvan and other modularities
The Properties of Adaptive Walks in Evolving Populations of Fungus
The Negatome database: a reference set of non-interacting protein pairs
Linking Human Diseases to Animal Models Using Ontology-Based Phenotype Annotation
Exploring protein fitness landscapes by directed evolution.
Calling International Rescue: knowledge lost in literature and data landslide!
Robust biomarker identification for cancer diagnosis with ensemble feature selection methods
A high-throughput screening approach to discovering good forms of biologically inspired visual representation.
Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicity
Over-optimism in bioinformatics research
BioModels.net Web Services, a free and integrated toolkit for computational modelling software.
Transcriptome complexity in a genome-reduced bacterium.
Impact of Genome Reduction on Bacterial Metabolism and Its Regulation
On the Origin of Species by Natural and Sexual Selection
Proteome organization in a genome-reduced bacterium.
Transcription factors mediate long-range enhancerÃ¢Â€Â“promoter interactions
Discrete logic modelling as a means to link protein signalling networks with functional analysis of mammalian signal transduction
Colloquium: Statistical mechanics of money, wealth, and income
Exceptional structured noncoding RNAs revealed by bacterial metagenome analysis.
Forcing cells to change lineages 
Bioclipse 2: A scriptable integration platform for the life sciences
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology.
Exploring Multidimensional Free Energy Landscapes Using Time-Dependent Biases on Collective Variables
GABAergic hub neurons orchestrate synchrony in developing hippocampal networks.
Archiving next generation sequencing data.
Identifying Drug Effects via Pathway Alterations using an Integer Linear Programming Optimization Formulation on Phosphoproteomic Data
Inferring binding energies from selected binding sites.
Predicting protein ligand binding sites by combining evolutionary sequence conservation and 3D structure.
Mining for coexpression across hundreds of datasets using novel rank aggregation and visualization methods
Protein complex prediction based on simultaneous protein interaction network
Amino-acid imbalance explains extension of lifespan by dietary restriction in Drosophila
{Integrating Phenotype Ontologies across Multiple Species}
Comparing Repository Types: Challenges and Barriers for Subject-Based Repositories, Research Repositories, National Repository Systems and Institutional Repositories in Serving Scholarly Communication
Science Direct
ChIP-Seq of transcription factors predicts absolute and differential gene expression in embryonic stem cells.
Building the sequence map of the human pan-genome
To use or not to use web 2.0 in higher education?
How does multiple testing correction work?
Preventing the return of fear in humans using reconsolidation update mechanisms
TabletÃ¢Â€Â”next generation sequence assembly visualization
ConceptGen: a gene set enrichment and gene set relation mapping tool.
Phylogenies reveal new interpretation of speciation and the Red Queen
Tmod: toolbox of motif discovery
Annotation Error in Public Databases: Misannotation of Molecular Function in Enzyme Superfamilies
Human Cancer Protein-Protein Interaction Network: A Structural Perspective
The 2010 Nucleic Acids Research Database Issue and online Database Collection: a community of data resources
Genome engineering
Mapping Human Genetic Diversity in Asia
The GAAS Metagenomic Tool and Its Estimations of Viral and Microbial Average Genome Size in Four Major Biomes
Advances in translational bioinformatics: computational approaches for the hunting of disease genes.
High-Performance Cloud Computing: A View of Scientific Applications
The sequence and de novo assembly of the giant panda genome
Label-free, normalized quantification of complex mass spectrometry data for proteomic analysis
Missing and spurious interactions and the reconstruction of complex networks
Personalized social search based on the user's social network
BLAST+: architecture and applications.
A minimal sequence code for switching protein structure and function
A feeling for the numbers in biology.
Sequences and consequences
A comprehensive catalogue of somatic mutations from a human cancer genome
A small-cell lung cancer genome with complex signatures of tobacco exposure.
Prediction of protein-protein interaction sites using an ensemble method
Three-dimensional structure determination from a single view
Parental origin of sequence variants associated with complex diseases
The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants
RNA processing and its regulation: global insights into biological networks
A SNP discovery method to assess variant allele probability from next-generation resequencing data.
De novo assembly of human genomes with massively parallel short read sequencing
A practical comparison of methods for detecting transcription factor binding sites in ChIP-seq experiments
Collective dynamics in human and monkey sensorimotor cortex: predicting single neuron spikes.
The evolutionary history of protein domains viewed by species phylogeny.
Stepwise Modification of a Modular Enhancer Underlies Adaptation in a Drosophila Population
RNA-Seq gene expression estimation with read mapping uncertainty
The future of eBooks? Will print disappear? An end-user perspective
Distributed fading memory for stimulus properties in the primary visual cortex.
Hydrodynamic blood plasma separation in microfluidic channels
Avoiding MEMS failures
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea.
The transcriptional network for mesenchymal transformation of brain tumours
Complex landscapes of somatic rearrangement in human breast cancer genomes.
Genome-Wide Association Data Reveal a Global Map of Genetic Interactions among Protein Complexes
A Quick Guide for Developing Effective Bioinformatics Programming Skills
Biomedical Text Mining and Its Applications
Basic ingredients of free energy calculations: a review.
Next generation transcriptomes for next generation genomes using est2assembly.
A global view of protein expression in human cells, tissues, and organs.
Pebble and rock band: heuristic resolution of repeats and scaffolding in the velvet short-read de novo assembler.
Learning Styles: Concepts and Evidence
Distinguishing influence-based contagion from homophily-driven diffusion in dynamic networks
Pandora, a pathway and network discovery approach based on common biological evidence.
The WEKA data mining software: an update
Covariation of Branch Lengths in Phylogenies of Functionally Related Genes
The Rate and Molecular Spectrum of Spontaneous Mutations in Arabidopsis thaliana
Nucleotide-resolution analysis of structural variants using BreakSeq and a breakpoint library
PRDM9 Is a Major Determinant of Meiotic Recombination Hotspots in Humans and Mice
Lipid Rafts As a Membrane-Organizing Principle
Disentangling Direct from Indirect Co-Evolution of Residues in Protein Alignments
A survey of statistical network models
The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services
Leveraging skewed transcript abundance by RNA-Seq to increase the genomic depth of the tree of life.
Personalized recommendation of social software items based on social relations
Antidepressant Drug Effects and Depression Severity: A Patient-Level Meta-analysis
PyMix - The Python mixture package - a tool for clustering of heterogeneous biological data
Endogenous non-retroviral RNA virus elements in mammalian genomes
On the Origin of Gravity and the Laws of Newton
Random Numbers Certified by Bell's Theorem
Quantum simulation of the Dirac equation
Bioinformatics challenges for genome-wide association studies.
Engineering Signal Transduction Pathways
Combining Structure and Sequence Information Allows Automated Prediction of Substrate Specificities within Enzyme Families
Network-Free Inference of Knockout Effects in Yeast
Transcriptional Control of Gene Expression by MicroRNAs
The evolution of gene duplications: classifying and distinguishing between models
A statistical method for the detection of alternative splicing using RNA-seq.
Characterization of the Oral Fungal Microbiome (Mycobiome) in Healthy Individuals
Conformational Transitions upon Ligand Binding: Holo-Structure Prediction from Apo Conformations
Self-Selected or Mandated, Open Access Increases Citation Impact for Higher Quality Research
CRISPR/Cas, the immune system of bacteria and archaea.
Machine learning methods for metabolic pathway prediction
Blueprint for antimicrobial hit discovery targeting metabolic networks.
Opposing microRNA families regulate self-renewal in mouse embryonic stem cells
Genome variation discovery with high-throughput sequencing data
On the detection and refinement of transcription factor binding sites using ChIP-Seq data.
Prioritizing GWAS Results: A Review of Statistical Methods and Recommendations for Their Application
NetPath: a public resource of curated signal transduction pathways.
Population genetic inference from genomic sequence variation
ETE: a python Environment for Tree Exploration
Google Book Search and the Future of Books in Cyberspace
Evaluation of Statistical Methods for Normalization and Differential Expression in mRNA-Seq Experiments
Rate, molecular spectrum, and consequences of human mutation
Genome sequence of the palaeopolyploid soybean
BamView: viewing mapped read alignment data in the context of the reference sequence.
Chimpanzee and human Y chromosomes are remarkably divergent in structure and gene content
miRMaid: a unified programming interface for microRNA data resources
Associating genes and protein complexes with disease via network propagation.
An Integrative -omics Approach to Identify Functional Sub-Networks in Human Colorectal Cancer
A Composite of Multiple Signals Distinguishes Causal Variants in Regions of Positive Selection
How culture shaped the human genome: bringing genetics and the human sciences together
Adaptive Evolution of Pelvic Reduction in Sticklebacks by Recurrent Deletion of a Pitx1 Enhancer
Prevalence and Trends in Obesity Among US Adults, 1999-2008
SeqTrim: a high-throughput pipeline for pre-processing any type of sequence read
Parallel, tag-directed assembly of locally derived short sequence reads.
PhenomiR: a knowledgebase for microRNA expression in diseases and biological processes.
A synchronized quorum of genetic clocks.
Mutational robustness can facilitate adaptation
The free-energy principle: a unified brain theory?
Fast and accurate long-read alignment with Burrows-Wheeler transform.
Evidence for grid cells in a human memory network
A protocol for generating a high-quality genome-scale metabolic reconstruction
The Genetic Landscape of a Cell
pegas: an R package for population genetics with an integrated-modular approach.
Rules for Biologically Inspired Adaptive Network Design
Evolution of MRSA During Hospital Transmission and Intercontinental Spread
Defining transcribed regions using RNA-seq.
Evolutionary Mirages: Selection on Binding Site Composition Creates the Illusion of Conserved Grammars in Drosophila Enhancers
NeatMap - non-clustering heat map alternatives in R
Genome-wide prediction of transcription factor binding sites using an integrated model
Epidemic spreading in evolving networks
Wikis: what students do and do not do when writing collaboratively
The Systemic Imprint of Growth and Its Uses in Ecological (Meta)Genomics
Rare variants create synthetic genome-wide associations.
Seven-Year Wilkinson Microwave Anisotropy Probe (WMAP) Observations: Cosmological Interpretation
Towards realistic benchmarks for multiple alignments of non-coding sequences
Biana: a software framework for compiling biological interactions and analyzing networks.
Foot strike patterns and collision forces in habitually barefoot versus shod runners
Direct conversion of fibroblasts to functional neurons by defined factors.
Structural Variation in the Human Genome and its Role in Disease
Towards a genome-scale kinetic model of cellular metabolism
Universal distribution of protein evolution rates as a consequence of protein folding physics.
Target-enrichment strategies for next-generation sequencing.
Expander: from expression microarrays to networks and functions
The Asynchronous State in Cortical Circuits
BEDTools: a flexible suite of utilities for comparing genomic features
Protein interaction networks--more than mere modules.
Automatic Assignment of EC Numbers
Incorporating sequence quality data into alignment improves DNA read mapping
Evidence for widespread adaptive evolution of gene expression in budding yeast.
Survival as a function of HbA1c in people with type 2 diabetes: a retrospective cohort study
Identifying influential spreaders in complex networks
Ancient animal microRNAs and the evolution of tissue identity
A new strategy for genome assembly using short sequence reads and reduced representation libraries
Protein interactions and ligand binding: from protein subfamilies to functional specificity.
Histone modification levels are predictive for gene expression
Identifying biologically relevant differences between metagenomic communities
Willful modulation of brain activity in disorders of consciousness.
FragBag, an accurate representation of protein structure, retrieves structural neighbors from the entire PDB quickly and accurately
Gene ontology analysis for RNA-seq: accounting for selection bias
The Overlap of Small Molecule and Protein Binding Sites within Families of Protein Structures
Network-based elucidation of human disease similarities reveals common functional modules enriched for pluripotent drug targets.
NMR Structure Determination for Larger Proteins Using Backbone-Only Data
iMotifs: an integrated sequence motif visualization and analysis environment
Dynamic changes in the human methylome during differentiation
Human and Non-Human Primate Genomes Share Hotspots of Positive Selection
Digital transcriptome profiling from attomole-level RNA samples.
Parameters for accurate genome alignment
Ultrahigh-throughput screening in drop-based microfluidics for directed evolution
2x genomes - depth does matter
Microindel detection in short-read sequence data
Ancient human genome sequence of an extinct Palaeo-Eskimo
Fast and SNP-tolerant detection of complex variants and splicing in short reads.
Assigning roles to DNA regulatory motifs using comparative genomics
LINNAEUS: a species name identification system for biomedical literature.
Accurate detection and genotyping of SNPs utilizing population sequencing data.
Fast and efficient searching of biological data resources--using EB-eye
Regulation of alternative splicing by histone modifications.
Encoding multiple unnatural amino acids via evolution of a quadruplet-decoding ribosome
Phybase: an R package for species tree analysis
Evidence-ranked motif identification
Quantum Measurement of Phonon Shot Noise
Panoramic Search: The Interaction of Memory and Vision in Search through a Familiar Scene
A Confederacy of Dunces
BisoGenet: a new tool for gene network building, visualization and analysis.
Signatures of mutation and selection in the cancer genome
The landscape of somatic copy-number alteration across human cancers
Complete Khoisan and Bantu genomes from southern Africa
Variability in gene expression underlies incomplete penetrance
The primary transcriptome of the major human pathogen Helicobacter pylori.
Remarkably ancient balanced polymorphisms in a multi-locus gene network
CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea
Limits of Predictability in Human Mobility
Regulation of Cellular Metabolism by Protein Lysine Acetylation
A statistical framework for differential network analysis from microarray data.
Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments
SLiM on Diet: finding short linear motifs on domain interaction interfaces in Protein Data Bank
Six RNA Viruses and Forty-One Hosts: Viral Small RNAs and Modulation of Small RNA Repertoires in Vertebrate and Invertebrate Systems
Plasmonics for extreme light concentration and manipulation
GO-Bayes: Gene Ontology-based overrepresentation analysis using a Bayesian approach.
Dynamical and bursty interactions in social networks
Thirty years of information literacy (1977Ã¢Â€Â”2007)
Genome sequence of the pea aphid Acyrthosiphon pisum.
Towards genome-scale signalling-network reconstructions.
Stimulus onset quenches neural variability: a widespread cortical phenomenon
Word add-in for ontology recognition: semantic enrichment of scientific literature.
SBRML: a markup language for associating systems biology data with models.
Antagonistic coevolution accelerates molecular evolution
The power of protein interaction networks for associating genes with diseases
A new generation of homology search tools based on probabilistic inference.
BioNet: an R-Package for the functional analysis of biological networks.
A Primer on Metagenomics
Noise Can Induce Bimodality in Positive Transcriptional Feedback Loops Without Bistability
Toward discovery science of human brain function.
Biomedical informatics and translational medicine.
Solving the apparent diversity-accuracy dilemma of recommender systems
Biased hosting of intronic microRNA genes
Resource Letter: Quantum Chromodynamics
What is Twitter, a Social Network or a News Media?
<i>CiteULike</i> y <i>Connotea</i>: herramientas 2.0 para el descubrimiento de la informaciÃ³n cientÃ­fica
High quality SNP calling using Illumina data at shallow coverage.
Systems survey of endocytosis by multiparametric image analysis
ScripTree: scripting phylogenetic graphics
An effective model for natural selection in promoters
Large-scale conformational sampling of proteins using temperature-accelerated molecular dynamics
The Genetics of Human Adaptation: Hard Sweeps, Soft Sweeps, and Polygenic Adaptation
SPICi: a fast clustering algorithm for large biological networks.
Social Navigation Support for Information Seeking: If You Build It, Will They Come?
A scaling normalization method for differential expression analysis of RNA-seq data
A human gut microbial gene catalogue established by metagenomic sequencing
Statistics and Physical Origins of pK and Ionization State Changes upon Protein-Ligand Binding
PaperMaker: validation of biomedical scientific publications
Modeling sample variables with an Experimental Factor Ontology.
An Atlas of Combinatorial Transcriptional Regulation in Mouse and Man
MapReduce Online
Treephyler: fast taxonomic profiling of metagenomes
rpSPH: a novel Smoothed Particle Hydrodynamics Algorithm
Visualization of omics data for systems biology
Parameter Estimation and Model Selection in Computational Biology
SNVMix: predicting single nucleotide variants from next-generation sequencing of tumors
Filtering error from SOLiD Output
Metabolic Syndrome and Altered Gut Microbiota in Mice Lacking Toll-Like Receptor 5
Diffusion, Crowding & Protein Stability in a Dynamic Molecular Model of the Bacterial Cytoplasm
GPU computing for systems biology
Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates.
Visualizing genomes: techniques and challenges
A Population Genetic Hidden Markov Model for Detecting Genomic Regions Under Selection
Ribosomal RNA diversity predicts genome diversity in gut bacteria and their relatives.
Nucleosome dynamics define transcriptional enhancers.
Evolutionary tinkering with conserved components of a transcriptional regulatory network.
Mayday--integrative analytics for expression data.
Comparing genome-wide chromatin profiles using ChIP-chip or ChIP-seq
Cell typeâ€“specific gene expression differences in complex tissues
Mixed linear model approach adapted for genome-wide association studies.
Gene duplication and the evolution of ribosomal protein gene regulation in yeast
Integrative analysis of the melanoma transcriptome
Assembly algorithms for next-generation sequencing data.
XGAP: a uniform and extensible data model and software platform for genotype and phenotype experiments.
Detection and correction of false segmental duplications caused by genome mis-assembly.
Transcriptome genetics using second generation sequencing in a Caucasian population
Understanding mechanisms underlying human gene expression variation with RNA sequencing
Visualization of image data from cells to organisms
Integrating multiple evidence sources to predict transcription factor binding in the human genome
Biochemical modeling with Systems Biology Graphical Notation
Transposases are the most abundant, most ubiquitous genes in nature
Analysis of Genetic Inheritance in a Family Quartet by Whole-Genome Sequencing
Whole-genome sequencing in a patient with Charcot-Marie-Tooth neuropathy.
MicroRNA control of signal transduction
Structural sources of robustness in biochemical reaction networks.
Toward Extracting All Phylogenetic Information from Matrices of Evolutionary Distances
Variance component model to account for sample structure in genome-wide association studies
So what do we really mean when we say that systems biology is holistic?
Transcription factor regulation can be accurately predicted from the presence of target gene signatures in microarray gene expression data
Two views of brain function
Effects of intensive blood-pressure control in type 2 diabetes mellitus.
DensiTree: making sense of sets of phylogenetic trees
Signed Networks in Social Media
Gene-environment-wide association studies: emerging approaches.
Plasmonics for improved photovoltaic devices
V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets
Calling SNPs without a reference sequence
Visualization of multiple alignments, phylogenies and gene family evolution
Composition bias and the origin of ORFan genes.
MapMi: automated mapping of microRNA loci.
Spatial Epigenetic Control of Mono- and Bistable Gene Expression
miRSel: automated extraction of associations between microRNAs and genes from the biomedical literature.
From Induced Fit to Conformational Selection: A Continuum of Binding Mechanism Controlled by the Timescale of Conformational Transitions
Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery
Global and unbiased detection of splice junctions from RNA-seq data
Conserved developmental transcriptomes in evolutionarily divergent species
Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium
{Quantum ground state and single-phonon control of a mechanical resonator}
Genetic analysis of variation in transcription factor binding in yeast
Large-scale prediction of protein-protein interactions from structures
Variation in Transcription Factor Binding Among Humans
Heritable Individual-Specific and Allele-Specific Chromatin Signatures in Humans
Advances in Cheminformatics Methodologies and Infrastructure to Support the Data Mining of Large, Heterogeneous Chemical Datasets
A guide to web tools to prioritize candidate genes
Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome
Analogies in theoretical physics
Systematic discovery of nonobvious human disease models through orthologous phenotypes
Revealing strengths and weaknesses of methods for gene network inference
Binding Site Turnover Produces Pervasive Quantitative Changes in Transcription Factor Binding between Closely Related Drosophila Species
The complete mitochondrial DNA genome of an unknown hominin from southern Siberia
Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines
Alignment and clustering of phylogenetic markers - implications for microbial diversity studies
The genetics of ageing
Integrating Pathway Analysis and Genetics of Gene Expression for Genome-wide Association Studies
Using pre-existing microarray datasets to increase experimental power: application to insulin resistance.
Learning Gene Regulatory Networks from Only Positive and Unlabeled Data
Quality measures for protein alignment benchmarks.
CDK-Taverna: an open workflow environment for cheminformatics.
Multirelational Organization of Large-scale Social Networks in an Online World
SICAGO: Semi-supervised cluster analysis using semantic distance between gene pairs in Gene Ontology
Online resources of cancer data: barriers, benefits and lessons
Dissemination of health information through social networks: twitter and antibiotics.
Regulatory divergence in Drosophila revealed by mRNA-seq
Genome-wide mapping and assembly of structural variant breakpoints in the mouse genome.
The genome of a songbird
Genome-wide association study of CNVs in 16,000 cases of eight common diseases and 3,000 shared controls
Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes
Predicting the Future with Social Media
Synchrony of Thalamocortical Inputs Maximizes Cortical Reliability
GeneMesh: a web-based microarray analysis tool for relating differentially expressed genes to MeSH terms.
Transcriptome-wide Identification of RNA-Binding Protein and MicroRNA Target Sites by PAR-CLIP
Predicting protein-protein interactions in unbalanced data using the primary structure of proteins
Virtual screening: an endless staircase?
A Chromatin-Mediated Reversible Drug-Tolerant State in Cancer Cell Subpopulations
Modular analysis of gene expression data with R
Semantic Enablement for Spatial Data Infrastructures
Phylogenetic assessment of alignments reveals neglected tree signal in gaps
Phylogenetic detection of numerous gene duplications shared by animals, fungi and plants.
Supervised normalization of microarrays
A highly efficient multi-core algorithm for clustering extremely large datasets
Homotypic clusters of transcription factor binding sites are a key component of human promoters and enhancers
Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota
"""Positive"" Results Increase Down the Hierarchy of the Sciences"
Five-Vertebrate ChIP-seq Reveals the Evolutionary Dynamics of Transcription Factor Binding
A CROC stronger than ROC: measuring, visualizing and optimizing early retrieval
Why Copy Others? Insights from the Social Learning Strategies Tournament
Correction of sequencing errors in a mixed set of reads
Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities.
De novo Assembly of a 40 Mb Eukaryotic Genome from Short Sequence Reads: Sordaria macrospora, a Model Organism for Fungal Morphogenesis
New Insights into the Genetic Control of Gene Expression using a Bayesian Multi-tissue Approach
OpenFlyData: an exemplar data web integrating gene expression data on the fruit fly Drosophila melanogaster.
Detection and characterization of novel sequence insertions using paired-end next-generation sequencing
Structural variation analysis with strobe reads
Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps
Conservation of recombination hotspots in yeast
Biology-driven cancer drug development: back to the future
How does search behavior change as search becomes more difficult?
Multifractal Network Generator
International network of cancer genome projects
Dissection of genetically complex traits with extremely large pools of yeast segregants
Genome remodelling in a basal-like breast cancer metastasis and xenograft
Genome assembly quality: Assessment and improvement using the neutral indel model
Electromagnetically induced transparency with single atoms in a cavity
Widespread transcription at neuronal activity-regulated enhancers
BioTorrents: a file sharing service for scientific data.
Genetic Heterogeneity in Human Disease
Integrative analysis of gene expression and copy number alterations using canonical correlation analysis.
Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation
Extending healthy life span--from yeast to humans.
Picante: R tools for integrating phylogenies and ecology.
Simultaneous Clustering of Multiple Gene Expression and Physical Interaction Datasets
Genome-wide association studies in diverse populations
Biases in Illumina transcriptome sequencing caused by random hexamer priming
Characterization of the RNA content of chromatin
Putting brain training to the test
Ab initio gene identification in metagenomic sequences.
Do pressures to publish increase scientists' bias? An empirical support from US states data
Metagenomic Sequencing of an In Vitro-Simulated Microbial Community
Genotype to Phenotype: A Complex Problem
Complexity and Diversity
Ergatis: a web interface and scalable software system for bioinformatics workflows.
Mining Mammalian Transcript Data for Functional Long Non-Coding RNAs
DendroPy: a Python library for phylogenetic computing
Reversible cerebral vasoconstriction syndrome
Meta-analysis for pathway enrichment analysis when combining multiple genomic studies.
Genome, epigenome and RNA sequences of monozygotic twins discordant for multiple sclerosis
Systematic comparison of microarray profiling, real-time PCR, and next-generation sequencing technologies for measuring differential microRNA expression
BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions
Semantic integration of data on transcriptional regulation.
Realism for scientific ontologies
Lateral transfer of genes from fungi underlies carotenoid production in aphids.
Integration of open access literature into the RCSB Protein Data Bank using BioLit
A quantitative model of transcriptional regulation reveals the influence of binding location on expression.
Cgaln: fast and space-efficient whole-genome alignment
Conservation and divergence of methylation patterning in plants and animals
GREAT improves functional interpretation of cis-regulatory regions
Ab initio reconstruction of cell typeâ€“specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
Dyslexic Children Show Short-Term Memory Deficits in Phonological Storage and Serial Rehearsal: An fMRI Study
A three-dimensional model of the yeast genome
Comparing genomes to computer operating systems in terms of the topology and evolution of their regulatory control networks
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation.
First Dark Matter Results from the XENON100 Experiment
Bayesian species delimitation using multilocus sequence data
Ohnologs in the human genome are dosage balanced and frequently associated with disease
Computational challenges in the analysis of ancient DNA
Statistical Design and Analysis of RNA Sequencing Data
Deciphering the splicing code
Natural selection on cis and trans regulation in yeasts.
A Draft Sequence of the Neandertal Genome
Targeted Investigation of the Neandertal Genome by Array-Based Sequence Capture
Document recommendation in social tagging services
Simulating Galaxy Clusters
Advancing RNA-Seq analysis
Introduction into the analysis of high-throughput-sequencing based epigenome data
Repitools: an R package for the analysis of enrichment-based epigenomic data.
Ensembl variation resources
Consistent annotation of gene expression arrays
Touring Ensembl: a practical guide to genome browsing.
eHive: an artificial intelligence workflow system for genomic analysis.
Arcadia: a visualization tool for metabolic pathways.
Propagation dynamics on networks featuring complex topologies
Adaptive networks: coevolution of disease and topology
Evolution of metabolic network organization
A global network of coexisting microbes from environmental and whole-genome sequence data.
A survey of sequence alignment algorithms for next-generation sequencing
Modeling non-uniformity in short-read rates in RNA-Seq data.
A 454 multiplex sequencing method for rapid and reliable genotyping of highly polymorphic genes in large-scale studies
Insulators and promoters: closer than we think
Decoding signalling networks by mass spectrometry-based proteomics
A formal test of the theory of universal common ancestry
Characterizing a scientific elite: the social characteristics of the most highly cited scientists in environmental science and ecology.
A study of Web 2.0 applications in library websites
The Newick utilities: high-throughput phylogenetic tree processing in the UNIX shell
Pooled Association Tests for Rare Variants in Exon-Resequencing Studies
Classification of DNA sequences using Bloom filters.
A Performance Comparison of CUDA and OpenCL
Global and local fMRI signals driven by neurons defined optogenetically by type and wiring
Uncovering the roles of rare variants in common disease through whole-genome sequencing
Detecting microRNA activity from gene expression data
High-throughput DNA sequencing - concepts and limitations
Cloud computing for comparative genomics
Missing heritability and strategies for finding the underlying causes of complex disease
"Most ""Dark Matter"" Transcripts Are Associated With Known Genes"
Towards a comprehensive structural variation map of an individual human genome
A human functional protein interaction network and its application to cancer data analysis
The anatomy of a large-scale social search engine
BioCatalogue: a universal catalogue of web services for the life sciences.
Independent filtering increases detection power for high-throughput experiments
Creation of a Bacterial Cell Controlled by a Chemically Synthesized Genome
A catalog of reference genomes from the human microbiome.
A Global Protein Kinase and Phosphatase Interaction Network in Yeast
GC-Biased Evolution Near Human Accelerated Regions
A Survey of Genomic Traces Reveals a Common Sequencing Error, RNA Editing, and DNA Editing
Differential expression analysis for sequence count data
FuncBase: a resource for quantitative gene function annotation.
From computational science to Internetics: Integration of science with computer science
Comparative assessment of methods for aligning multiple genome sequences
High-throughput sequencing reveals extensive variation in human-specific L1 content in individual human genomes
Sequence space and the ongoing expansion of the protein universe.
Reporting and Interpretation of Randomized Controlled Trials With Statistically Nonsignificant Results for Primary Outcomes
Sequence features that drive human promoter function and tissue specificity
The mutation spectrum revealed by paired genome sequences from a lung cancer patient.
An eScience-Bayes strategy for analyzing omics data.
myExperiment: a repository and social network for the sharing of bioinformatics workflows.
Assembly of large genomes using second-generation sequencing.
Screening the human exome: a comparison of whole genome and whole transcriptome sequencing
Identifying Tightly Regulated and Variably Expressed Networks by Differential Rank Conservation (DIRAC)
Evoker: a visualization tool for genotype intensity data.
geWorkbench: an open source platform for integrative genomics.
Relationship between nucleosome positioning and DNA methylation
A Bayesian framework to account for complex non-genetic factors in gene expression levels greatly increases power in eQTL studies.
From dwarf spheroidals to cDs: Simulating the galaxy population in a LCDM cosmology
The role of transposable elements in the evolution of non-mammalian vertebrates and invertebrates.
Researchers e-journal use and information seeking behaviour
Gap5Ã¢Â€Â”editing the billion fragment sequence assembly
Strand-specific deep sequencing of the transcriptome
CisGenome Browser: a flexible tool for genomic data visualization.
Phenotypic robustness conferred by apparently redundant transcriptional enhancers.
Abraham's Children in the Genome Era: Major Jewish Diaspora Populations Comprise Distinct Genetic Clusters with Shared Middle Eastern Ancestry
Induction of Fear Extinction with Hippocampal-Infralimbic BDNF
Expansion of the protein repertoire in newly explored environments: human gut microbiome specific protein families.
Challenges of sequencing human genomes
Signatures of RNA binding proteins globally coupled to effective microRNA target sites.
"Use of Genome-Wide Expression Data to Mine the ""Gray Zone"" of GWA Studies Leads to Novel Candidate Obesity Genes"
PathText: a text mining integrator for biological pathway visualizations
Efficient construction of an assembly string graph using the FM-index
Transposable elements have rewired the core regulatory network of human embryonic stem cells
Complex event extraction at PubMed scale
Event extraction for systems biology by text mining the literature
Clustering phenotype populations by genome-wide RNAi and multiparametric imaging
Druggable pockets and binding site centric chemical space: a paradigm shift in drug discovery.
Next-generation genomics: an integrative approach
MiRror: a combinatorial analysis web tool for ensembles of microRNAs and their targets
Automated identification of pathways from quantitative genetic interaction data
The genome-wide structure of the Jewish people.
Functional impact of global rare copy number variation in autism spectrum disorders
Over-optimism in bioinformatics: an illustration
The ecological coherence of high bacterial taxonomic ranks
Protein interface conservation across structure space
Introducing W.A.T.E.R.S.: a Workflow for the Alignment, Taxonomy, and Ecology of Ribosomal Sequences
The (r)evolution of cancer genetics
Definition of Health 2.0 and Medicine 2.0: A Systematic Review
Neuronal arithmetic.
Accessing the SEED genome databases via Web services API: tools for programmers.
Constraints and plasticity in genome and molecular-phenome evolution
Genomics: The tale of our other genome.
Statistical tests for associations between two directed acyclic graphs.
Designing deep sequencing experiments: detecting structural variation and estimating transcript abundance
Whole-Genome Sequencing of a Single Proband Together with Linkage Analysis Identifies a Mendelian Disease Gene
Bioinformatics training: a review of challenges, actions and support requirements
Savant: genome browser for high-throughput sequencing data
Manipulation of FASTQ data with Galaxy.
Iterative Correction of Reference Nucleotides (iCORN) using second generation sequencing technology
Spatial organization of the flow of genetic information in bacteria
Common SNPs explain a large proportion of the heritability for human height
Expert credibility in climate change
CiTO, the Citation Typing Ontology
A coding-independent function of gene and pseudogene mRNAs regulates tumour biology.
TabSQL: a MySQL tool to facilitate mapping user data to public databases.
Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor
Web-Based, Participant-Driven Studies Yield Novel Genetic Associations for Common Traits
Open Access to the Scientific Journal Literature: Situation 2009
A Generalization of Hamilton's Rule for the Evolution of Microbial Cooperation
Natural Mutagenesis of Human Genomes by Endogenous Retrotransposons
Genome-wide allele-specific analysis: insights into regulatory variation
Galaxy formation theory
Comparison and calibration of transcriptome data from RNA-Seq and tiling arrays.
Debunking the 100X GPU vs. CPU myth: an evaluation of throughput computing on CPU and GPU
BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models.
A Taxonomy of Networks
Biological knowledge bases using Wikis: combining the flexibility of Wikis with the structure of databases.
Knowledge-based annotation of small molecule binding sites in proteins.
Genetic Signatures of Exceptional Longevity in Humans
Sequencing of 50 human exomes reveals adaptation to high altitude.
LINE-1 Retrotransposition Activity in Human Genomes
Save the tree of life or get lost in the woods
The Unconscious Will: How the Pursuit of Goals Operates Outside of Conscious Awareness
Subnanometre single-molecule localization, registration and distance measurements
Cloud-Coffee: implementation of a parallel consistency-based multiple alignment algorithm in the T-Coffee package and its benchmarking on the Amazon Elastic-Cloud
ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data
The Effects of Alignment Quality, Distance Calculation Method, Sequence Filtering, and Region on the Analysis of 16S rRNA Gene-Based Studies
Intergenic and Repeat Transcription in Human, Chimpanzee and Macaque Brains Measured by RNA-Seq
Long Noncoding RNA as Modular Scaffold of Histone Modification Complexes
Evaluation of Algorithm Performance in ChIP-Seq Peak Detection
Long noncoding RNA genes: conservation of sequence and brain expression among diverse amniotes
Cloud computing and the DNA data race
A novel pathway regulates memory and plasticity via SIRT1 and miR-134
Complete trails of co-authorship network evolution
High-Resolution Analysis of Parent-of-Origin Allelic Expression in the Mouse Brain
Annotating non-coding regions of the genome.
Scientometrics 2.0: New metrics of scholarly impact on the social Web
SEQADAPT: an adaptable system for the tracking, storage and analysis of high throughput sequencing experiments
Viruses in the faecal microbiota of monozygotic twins and their mothers
Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data
Science 2.0 (change will happenâ€¦.)
Quantifying the mechanisms of domain gain in animal proteins.
Online Professionalism and the Mirror of Social Media
The Construction and Use of Log-Odds Substitution Scores for Multiple Sequence Alignment
Computational Design of an Enzyme Catalyst for a Stereoselective Bimolecular Diels-Alder Reaction
BigWig and BigBed: enabling browsing of large distributed datasets.
Integration and visualization of systems biology data in context of the genome
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
S3DB core: a framework for RDF generation and management in bioinformatics infrastructures.
Epigenetic memory in induced pluripotent stem cells
Origins, evolution, and phenotypic impact of new genes
MIReNA: finding microRNAs with high accuracy and no learning at genome scale and from deep sequencing data
The effect of standards and fuel prices on automobile fuel economy: An international analysis
The role of nucleosome positioning in the evolution of gene regulation.
Good Practices in Free-Energy Calculations
Cytoscape Web: an interactive web-based network browser
The widespread regulation of microRNA biogenesis, function and decay
Diverse somatic mutation patterns and pathway alterations in human cancers
Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells
Detection of splice junctions from paired-end RNA-seq data by SpliceMap
Unexpected Inheritance: Multiple Integrations of Ancient Bornavirus and Ebolavirus/Marburgvirus Sequences in Vertebrate Genomes
More Than 1,001 Problems with Protein Domain Databases: Transmembrane Regions, Signal Peptides and the Issue of Sequence Homology
Comparison study of microarray meta-analysis methods.
ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level
The CoFactor database: organic cofactors in enzyme catalysis
Adoption and use of Web 2.0 in scholarly communications
Predicting protein structures with a multiplayer online game
The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models.
The Amphimedon queenslandica genome and the evolution of animal complexity
Biological, clinical and population relevance of 95 loci for blood lipids.
PeakAnalyzer: genome-wide annotation of chromatin binding and modification loci.
The Extinction Dynamics of Bacterial Pseudogenes
A Bayesian Approach to the Evolution of Metabolic Networks on a Phylogeny
Optimization of de novo transcriptome assembly from next-generation sequencing data
From complete genome sequence to â€˜completeâ€™ understanding?
An alignment-free model for comparison of regulatory sequences.
Microarray meta-analysis database (M(2)DB): a uniformly pre-processed, quality controlled, and manually curated human clinical microarray database.
baySeq: Empirical Bayesian methods for identifying differential expression in sequence count data
Cloud-scale RNA-sequencing differential expression analysis with Myrna
Mammalian microRNAs predominantly act to decrease target mRNA levels
Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa
Search and clustering orders of magnitude faster than BLAST
Signatures of positive selection apparent in a small sample of human exomes
Comprehensive comparative analysis of strand-specific RNA sequencing methods
Integration of metabolic databases for the reconstruction of genome-scale metabolic networks.
Text mining meets workflow: linking U-Compare with Taverna.
Scale-free structural organization of oxygen interstitials in La2CuO4+y
SEWAL: an open-source platform for next-generation sequence analysis and visualization
Comprehensive methylome map of lineage commitment from haematopoietic progenitors.
Computational solutions to large-scale data management and analysis.
De novo assembly of short sequence reads
WENDI: A tool for finding non-obvious relationships between compounds and biological properties, genes, diseases and scholarly publications
Mediator and cohesin connect gene expression and chromatin architecture
A ChIP-seq defined genome-wide map of vitamin D receptor binding: Associations with disease and evolution
The energetics of genome complexity
Sequence signatures and mRNA concentration can explain two-thirds of protein abundance variation in a human cell line
Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
The evolution of eusociality
BioRuby: bioinformatics software for the Ruby programming language
GASSST: global alignment short sequence search tool
Optimally Interacting Minds
A standard variation file format for human genome sequences.
METAREP: JCVI metagenomics reportsÃ¢Â€Â”an open source tool for high-performance comparative metagenomics
Did genetic drift drive increases in genome complexity?
Comprehensive modeling of microRNA targets predicts functional non-conserved and non-canonical sites.
Reshaping the gut microbiome with bacterial transplantation and antibiotic intake
Data analysis recipes: Fitting a model to data
ChIP-Seq identification of weakly conserved heart enhancers
Detecting copy number variation with mated short reads
Simple sequence-based kernels do not predict proteinÃ¢Â€Â“protein interactions
Bacterial charity work leads to population-wide resistance.
Integrating common and rare genetic variation in diverse human populations.
Genome-wide measurement of RNA secondary structure in yeast
The Spread of Behavior in an Online Social Network Experiment
Peer-review in a world with rational scientists: Toward selection of the average
Should We Abandon the t-Test in the Analysis of Gene Expression Microarray Data: A Comparison of Variance Modeling Strategies
Adding a little reality to building ontologies for biology.
Intrinsic biophysical diversity decorrelates neuronal firing while increasing information content
Consistency, comprehensiveness, and compatibility of pathway databases.
Sequencing and analysis of an Irish human genome
Utopia documents: linking scholarly literature with research data.
Ten years of genetics and genomics: what have we achieved and where are we heading?
BioXSD: the common data-exchange format for everyday bioinformatics web services.
Fundamental limits on the suppression of molecular fluctuations
The BioPAX community standard for pathway data sharing
Next generation tools for genomic data generation, distribution, and visualization
PubDNA Finder: a web database linking full-text articles to sequences of nucleic acids
High Resolution Models of Transcription Factor-DNA Affinities Improve In Vitro and In Vivo Binding Predictions
The Characterization of Twenty Sequenced Human Genomes
Alternative expression analysis by RNA sequencing
Seed mass and mast seeding enhance dispersal by a neotropical scatter-hoarding rodent
Tackling the widespread and critical impact of batch effects in high-throughput data
Genome-wide analysis of a long-term evolution experiment with {D}rosophila
Error estimation in astronomy: A guide
Ruffus: a lightweight Python library for computational pipelines
Advances in understanding cancer genomes through second-generation sequencing
MetNetGE: interactive views of biological networks and ontologies.
miRNAkey: a software for microRNA deep sequencing analysis
Polymorphic Cis- and Trans-Regulation of Human Gene Expression
Overlapping codes within protein-coding sequences
ProteinÃ¢Â€Â“protein interaction and pathway databases, a graphical review
Origin of the human malaria parasite Plasmodium falciparum in gorillas
Google Scholar's Dramatic Coverage Improvement Five Years after Debut
A general mechanism for network-dosage compensation in gene circuits.
Optical Clocks and Relativity
Reaction-Diffusion Model as a Framework for Understanding Biological Pattern Formation
Literature Mining for the Discovery of Hidden Connections between Drugs, Genes and Diseases
Quantitative comparison of genome-wide DNA methylation mapping technologies
Resonant and crossover phenomena in a multiband superconductor tuning the chemical potential near a band edge
SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data.
The structural and content aspects of abstracts versus bodies of full text journal articles are different.
High Frequency of Horizontal Gene Transfer in the Oceans
Evidence for a Collective Intelligence Factor in the Performance of Human Groups
A New Look At The Path Integral Of Quantum Mechanics
Long Noncoding RNAs with Enhancer-like Function in Human Cells
Systematic Protein Location Mapping Reveals Five Principal Chromatin Types in Drosophila Cells
Highly Efficient Reprogramming to Pluripotency and Directed Differentiation of Human Cells with Synthetic Modified mRNA.
Resequencing of 200 human exomes identifies an excess of low-frequency non-synonymous coding variants
Determining the specificity of proteinÃ¢Â€Â“DNA interactions
Dynamic interaction networks in a hierarchically organized tissue.
Automatic, context-specific generation of Gene Ontology slims.
Improved variant discovery through local re-alignment of short-read next-generation sequencing data using SRMA
Selection upon Genome Architecture: Conservation of Functional Neighborhoods with Changing Genes
Optimal Diet Breadth Theory as a Model to Explain Variability in Amazonian Hunting
Mirmecofilia: las plantas con ejÃ©rcito propio
Bushmeat and the Fate of Trees with Seeds Dispersed by Large Primates in a Lowland Rain Forest in Western Amazonia
Integrated systematic reevaluation of the Amazonian genus Scolomys (Rodentia: Sigmodontinae)
Distribution of Plants with Extrofloral Nectaries and Ants at Two Elevations in Jamaica
Incorporating Animal Behavior into Seed Dispersal Models: Implications for Seed Shadows
Roost Fidelity and Fission-Fusion Dynamics of White-Striped Free-Tailed Bats (Tadarida Australis)
Roost Selection by Forest-Living Female Big Brown Bats (Eptesicus fuscus)
Experimental Investigations into the Mineral Nutrition of Several Grass Species: IV. Nitrogen Level
De novo assembly and analysis of RNA-seq data
Spontaneous emergence of social influence in online systems
Epigenetic modifications and human disease
Publish your computer code: it is good enough
Computational science: ...Error
Geoseq: a tool for dissecting deep-sequencing datasets
Data structures and compression algorithms for high-throughput sequencing technologies
Atomic-Level Characterization of the Structural Dynamics of Proteins
Twitter mood predicts the stock market
Comparing de novo assemblers for 454 transcriptome data
Statistical analysis strategies for association studies involving rare variants
Names are key to the big new biology
The peculiar velocity field: constraining the tilt of the Universe
Non-synonymous and synonymous coding SNPs show similar likelihood and effect size of human disease association.
Conflicts of Interest at Medical Journals: The Influence of Industry-Supported Randomised Trials on Journal Impact Factors and Revenue â€“ Cohort Study
A map of human genome variation from population-scale sequencing
The patterns and dynamics of genomic instability in metastatic pancreatic cancer
Distant metastasis occurs late during the genetic evolution of pancreatic cancer
Whole-genome sequencing and comprehensive variant analysis of a Japanese individual using massively parallel sequencing
Diversity of human copy number variation and multicopy genes.
Dindel: Accurate indel calls from short-read data.
Simultaneous Falsification of LCDM and Quintessence with Massive, Distant Clusters
CaGrid Workflow Toolkit: A taverna based workflow tool for cancer grid
Exploring the Universe of Protein Structures beyond the Protein Data Bank
FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing.
The Honey Bee Epigenomes: Differential Methylation of Brain DNA in Queens and Workers
Transposable element insertions have strongly affected human evolution
Experimental demonstration of information-to-energy conversion and validation of the generalized Jarzynski equality
Genetic interactions reveal the evolutionary trajectories of duplicate genes
Concentric circles in WMAP data may provide evidence of violent pre-Big-Bang activity
Analysing biological pathways in genome-wide association studies
Life is physics: evolution as a collective phenomenon far from equilibrium
Limitations of next-generation genome sequence assembly
Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data
Software that goes with the flow in systems biology.
A Bacterium That Can Grow by Using Arsenic Instead of Phosphorus
