# ./mi_soft/src/mutualinfo_matrix_cluster_pseudocount_zscore_row_w_2015 -fsa Gaoetal2011.fasta -seed 42 -lc 0
# Mon Sep  7 23:04:31 2015
# User: diego
# PWD : /home/diego
# Host: Linux SIRRAH 3.19.0-26-generic x86_64
# -fsa     1                    Input is fasta format
# -seed    42                   Seed for random number [=0 time, <0 Default]
# -lc      0.000000             Low count value
# Command line parameters set to:
#	[-c]                 1                    Sequence clustering [default on]
#	[-t float]           0.000000             Threshold
#	[-i float]           0.620000             Percent id for clustering
#	[-xg]                1                    Exclude gaps from statistics [default on]
#	[-lc float]          0.000000             Low count value
#	[-a string]          ACDEFGHIKLMNPQRSTVWYX- Aminoacid alphabet
#	[-v]                 0                    Verbose mode
#	[-ns int]            100                  Number of samples for Z-score
#	[-seed int]          42                   Seed for random number [=0 time, <0 Default]
#	[-fsa]               1                    Input is fasta format
#	[-fixg]              1                    Fixed gaps [default on]
#	[-apc]               1                    Use APC correction [default on]
#	[-maxgap float]      0.500000             Max fraction of gaps in positions included in calculation
#	[-pw]                0                    Print weight on each PIR
#	[-o int]             0                    Offset for residue enumeration
# Number of FASTA entries read 6 from file Gaoetal2011.fasta
# Threshold 0.000000
# Amino acid alphabet ACDEFGHIKLMNPQRSTVWYX-
# Nprot 6. Maxlen 6
# Len 6
# Nuse 6
# Cluster ID 0.620000
# Ncluster 2.000000
MI[ 1 D ][ 2 A ] = 0.000000 0.002006 0.093881 -0.021369
MI[ 1 D ][ 3 W ] = 0.000000 -0.001080 0.104824 0.010305
MI[ 1 D ][ 4 A ] = 0.000000 0.014994 0.087840 -0.170702
MI[ 1 D ][ 5 E ] = 0.000000 0.004254 0.100466 -0.042342
MI[ 1 D ][ 6 E ] = 0.000000 0.001291 0.098624 -0.013088
MI[ 2 A ][ 3 W ] = 0.000000 0.009039 0.087698 -0.103070
MI[ 2 A ][ 4 A ] = 0.000000 0.006874 0.082407 -0.083420
MI[ 2 A ][ 5 E ] = 0.000000 0.002552 0.089323 -0.028567
MI[ 2 A ][ 6 E ] = 0.000000 0.013143 0.095579 -0.137512
MI[ 3 W ][ 4 A ] = 0.101662 -0.001809 0.092269 1.121399
MI[ 3 W ][ 5 E ] = 0.101662 0.011972 0.100032 0.896607
MI[ 3 W ][ 6 E ] = 0.018484 -0.007600 0.089352 0.291919
MI[ 4 A ][ 5 E ] = 0.101662 -0.000498 0.084746 1.205485
MI[ 4 A ][ 6 E ] = 0.018484 0.008961 0.094387 0.100889
MI[ 5 E ][ 6 E ] = 0.018484 0.007636 0.102682 0.105648
