# Julia coverage/memory
*.jl.*.cov
*.jl.cov
*.jl.mem

# Generated simulation outputs
*.csv
*.gsd
*.json
*.log
*.pdf
*.xyz

# CUDA / profiling artifacts
*.ptx
*.cubin
*.nvvp
*.nsys-rep
*.qdrep
cuda-memcheck.log

# Julia env/runtime artifacts
/Manifest.toml
/LocalPreferences.toml

# Docs build artifacts
/docs/build/
/docs/Manifest.toml

# macOS Finder metadata
.DS_Store

# Local scratch/output trees
/Documents/*
/Bug_report/

# Examples: keep only the public example whitelist in git
/examples/*
!/examples/README.md
!/examples/_example_utils.jl
!/examples/_free_aoup_msd_utils.jl
!/examples/2D_active_OU_brownian.jl
!/examples/2D_active_OU_brownian_free_msd.jl
!/examples/2D_active_multi_OU_brownian_free_msd.jl
!/examples/2D_active_thermal_OU_brownian.jl
!/examples/2D_active_thermal_OU_brownian_free_msd.jl
!/examples/2D_active_thermal_multi_OU_brownian_free_msd.jl
!/examples/2D_example_virial.jl
!/examples/2D_polymer_bonded.jl
!/examples/3D_BD.jl
!/examples/3D_LJ_NVE.jl
!/examples/3D_KG_melt_showcase.jl
!/examples/3D_polymer_melt.jl
!/examples/SingleT_2D_MD_CSVR.jl
!/examples/TwoT_LJ2D_LD.jl
!/examples/kg_fresnel_movie.py
!/examples/kg_fresnel_environment.yml
!/examples/mace/
!/examples/mace/**
/examples/mace/Manifest.toml
/examples/mace/validation/*.npz
/examples/mace/validation/*.csv
/examples/mace/validation/*.gsd
/examples/mace/validation/*.txt
