# This file is a part of Julia. License is MIT: https://julialang.org/license

module Operations

using UUIDs
using Random: randstring
import LibGit2, Dates, TOML

import REPL
using REPL.TerminalMenus
using ..Types, ..Resolve, ..PlatformEngines, ..GitTools, ..MiniProgressBars
import ..depots, ..depots1, ..devdir, ..set_readonly, ..Types.PackageEntry
import ..Artifacts: ensure_all_artifacts_installed, artifact_names, extract_all_hashes, artifact_exists
using Base.BinaryPlatforms
import ...Pkg
import ...Pkg: pkg_server
import ...Pkg: can_fancyprint, stderr_f
import ..Types: printpkgstyle

#########
# Utils #
#########

const PkgUUID = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
pkg_scratchpath() = joinpath(depots1(), "scratchspaces", PkgUUID)

function find_installed(name::String, uuid::UUID, sha1::SHA1)
    slug_default = Base.version_slug(uuid, sha1)
    # 4 used to be the default so look there first
    for slug in (slug_default, Base.version_slug(uuid, sha1, 4))
        for depot in depots()
            path = abspath(depot, "packages", name, slug)
            ispath(path) && return path
        end
    end
    return abspath(depots1(), "packages", name, slug_default)
end

# more accurate name is `should_be_tracking_registered_version`
# the only way to know for sure is to key into the registries
tracking_registered_version(pkg, julia_version = VERSION) =
    !is_stdlib(pkg.uuid, julia_version) && pkg.path === nothing && pkg.repo.source === nothing

function source_path(ctx, pkg::PackageSpec)
    return is_stdlib(pkg.uuid, ctx.julia_version) ? Types.stdlib_path(pkg.name) :
        pkg.path        !== nothing ? joinpath(dirname(ctx.env.project_file), pkg.path) :
        pkg.repo.source !== nothing ? find_installed(pkg.name, pkg.uuid, pkg.tree_hash) :
        pkg.tree_hash   !== nothing ? find_installed(pkg.name, pkg.uuid, pkg.tree_hash) :
        nothing
end

is_dep(ctx::Context, pkg::PackageSpec) =
    any(uuid -> uuid == pkg.uuid, [uuid for (name, uuid) in ctx.env.project.deps])

#TODO rename
function load_version(version, fixed, preserve::PreserveLevel)
    if version === nothing
        return VersionSpec() # some stdlibs dont have a version
    elseif fixed
        return version # dont change state if a package is fixed
    elseif preserve == PRESERVE_ALL || preserve == PRESERVE_DIRECT
        return something(version, VersionSpec())
    elseif preserve == PRESERVE_SEMVER && version != VersionSpec()
        return Types.semver_spec("$(version.major).$(version.minor).$(version.patch)")
    elseif preserve == PRESERVE_NONE
        return VersionSpec()
    end
end

function load_direct_deps(ctx::Context, pkgs::Vector{PackageSpec}=PackageSpec[];
                          preserve::PreserveLevel=PRESERVE_DIRECT)
    pkgs = copy(pkgs)
    for (name::String, uuid::UUID) in ctx.env.project.deps
        findfirst(pkg -> pkg.uuid == uuid, pkgs) === nothing || continue # do not duplicate packages
        entry = manifest_info(ctx, uuid)
        push!(pkgs, entry === nothing ?
              PackageSpec(;uuid=uuid, name=name) :
              PackageSpec(;
                uuid      = uuid,
                name      = name,
                path      = entry.path,
                repo      = entry.repo,
                pinned    = entry.pinned,
                tree_hash = entry.tree_hash, # TODO should tree_hash be changed too?
                version   = load_version(entry.version, isfixed(entry), preserve),
              ))
    end
    return pkgs
end

function load_manifest_deps(ctx::Context, pkgs::Vector{PackageSpec}=PackageSpec[];
                            preserve::PreserveLevel=PRESERVE_ALL)
    pkgs = copy(pkgs)
    for (uuid, entry) in ctx.env.manifest
        findfirst(pkg -> pkg.uuid == uuid, pkgs) === nothing || continue # do not duplicate packages
        push!(pkgs, PackageSpec(
            uuid      = uuid,
            name      = entry.name,
            path      = entry.path,
            pinned    = entry.pinned,
            repo      = entry.repo,
            tree_hash = entry.tree_hash, # TODO should tree_hash be changed too?
            version   = load_version(entry.version, isfixed(entry), preserve),
        ))
    end
    return pkgs
end

function load_all_deps(ctx::Context, pkgs::Vector{PackageSpec}=PackageSpec[];
                       preserve::PreserveLevel=PRESERVE_ALL)
    pkgs = load_manifest_deps(ctx, pkgs; preserve=preserve)
    return load_direct_deps(ctx, pkgs; preserve=preserve)
end

function is_instantiated(ctx::Context)::Bool
    # Load everything
    pkgs = load_all_deps(ctx)
    # If the top-level project is a package, ensure it is instantiated as well
    if ctx.env.pkg !== nothing
        # Top-level project may already be in the manifest (cyclic deps)
        # so only add it if it isn't there
        idx = findfirst(x -> x.uuid == ctx.env.pkg.uuid, pkgs)
        if idx === nothing
            push!(pkgs, Types.PackageSpec(
                name=ctx.env.pkg.name, uuid=ctx.env.pkg.uuid, version=ctx.env.pkg.version,
                path=dirname(ctx.env.project_file)
            ))
        end
    end
    # Make sure all paths/artifacts exist
    return all(pkg -> is_package_downloaded(ctx, pkg), pkgs)
end

function update_manifest!(ctx::Context, pkgs::Vector{PackageSpec}, deps_map)
    manifest_before = deepcopy(ctx.env.manifest)
    manifest = ctx.env.manifest
    empty!(manifest)
    if ctx.env.pkg !== nothing
        pkgs = push!(copy(pkgs), ctx.env.pkg::PackageSpec)
    end
    for pkg in pkgs
        entry = PackageEntry(;name = pkg.name, version = pkg.version, pinned = pkg.pinned,
                             tree_hash = pkg.tree_hash, path = pkg.path, repo = pkg.repo)
        if is_stdlib(pkg.uuid, ctx.julia_version)
            # do not set version for stdlibs
            entry.version = nothing
        end
        if Types.is_project(ctx, pkg)
            entry.deps = ctx.env.project.deps
        else
            entry.deps = deps_map[pkg.uuid]
        end
        ctx.env.manifest[pkg.uuid] = entry
    end
    prune_manifest(ctx)
end

# TODO: Should be included in Base
function signal_name(signal::Integer)
    if signal == Base.SIGHUP
        "HUP"
    elseif signal == Base.SIGINT
        "INT"
    elseif signal == Base.SIGQUIT
        "QUIT"
    elseif signal == Base.SIGKILL
        "KILL"
    elseif signal == Base.SIGPIPE
        "PIPE"
    elseif signal == Base.SIGTERM
        "TERM"
    else
        string(signal)
    end
end

####################
# Registry Loading #
####################

function load_versions(ctx, path::String; include_yanked=false)
    toml = parse_toml(ctx, joinpath(path, "Versions.toml"); fakeit=true)
    versions = Dict{VersionNumber, SHA1}(
        VersionNumber(ver) => SHA1(info["git-tree-sha1"]) for (ver, info) in toml
            if !get(info, "yanked", false) || include_yanked)
    if Pkg.OFFLINE_MODE[] # filter out all versions that are not already downloaded
        pkg = parse_toml(joinpath(path, "Package.toml"))
        filter!(versions) do (v, sha)
            pkg_spec = PackageSpec(name=pkg["name"]::String, uuid=UUID(pkg["uuid"]::String), version=v, tree_hash=sha)
            return is_package_downloaded(ctx, pkg_spec)
        end
    end
    return versions
end

load_package_data(ctx::Context, ::Type{T}, path::String, version::VersionNumber) where {T} =
    get(load_package_data(ctx, T, path, [version]), version, nothing)

# TODO: This function is very expensive. Optimize it
function load_package_data(ctx::Context, ::Type{T}, path::String, versions::Vector{VersionNumber}) where {T}
    compressed = parse_toml(ctx, path; fakeit=true)
    compressed = convert(Dict{String, Dict{String, Union{String, Vector{String}}}}, compressed)
    uncompressed = Dict{VersionNumber, Dict{String,T}}()
    # Many of the entries are repeated so we keep a cache so there is no need to re-create
    # a bunch of identical objects
    cache = Dict{String, T}()
    vsorted = sort(versions)
    for (vers, data) in compressed
        vs = VersionRange(vers)
        first = length(vsorted) + 1
        # We find the first and last version that are in the range
        # and since the versions are sorted, all versions in between are sorted
        for i in eachindex(vsorted)
            v = vsorted[i]
            v in vs && (first = i; break)
        end
        last = 0
        for i in reverse(eachindex(vsorted))
            v = vsorted[i]
            v in vs && (last = i; break)
        end
        for i in first:last
            v = vsorted[i]
            uv = get!(() -> Dict{String, T}(), uncompressed, v)
            for (key, value) in data
                if haskey(uv, key)
                    @warn "Overlapping ranges for $(key) in $(repr(path)) for version $v."
                else
                    Tvalue = if value isa String
                        Tvalue = get!(()->T(value), cache, value)
                    else
                        Tvalue = T(value)
                    end
                    uv[key] = Tvalue
                end
            end
        end
    end
    return uncompressed
end

function load_tree_hash(ctx::Context, pkg::PackageSpec)
    hashes = SHA1[]
    for path in registered_paths(ctx, pkg.uuid)
        vers = load_versions(ctx, path; include_yanked=true)
        hash = get(vers, pkg.version, nothing)
        hash !== nothing && push!(hashes, hash)
    end
    isempty(hashes) && return nothing
    length(unique!(hashes)) == 1 || pkgerror("hash mismatch")
    return hashes[1]
end

function load_tree_hashes!(ctx::Context, pkgs::Vector{PackageSpec})
    for pkg in pkgs
        tracking_registered_version(pkg, ctx.julia_version) || continue
        pkg.tree_hash = load_tree_hash(ctx, pkg)
    end
end

#######################################
# Dependency gathering and resolution #
#######################################
function collect_project!(ctx::Context, pkg::PackageSpec, path::String,
                          deps_map::Dict{UUID,Vector{PackageSpec}})
    deps_map[pkg.uuid] = PackageSpec[]
    project_file = projectfile_path(path; strict=true)
    if project_file === nothing
        pkgerror("could not find project file for package $(err_rep(pkg)) at `$path`")
    end
    project = read_package(project_file)
    julia_compat = get(project.compat, "julia", nothing)
    if julia_compat !== nothing && !(VERSION in Types.semver_spec(julia_compat))
        println(ctx.io, "julia version requirement for package $(err_rep(pkg)) not satisfied")
    end
    for (name, uuid) in project.deps
        vspec = Types.semver_spec(get(project.compat, name, ">= 0"))
        push!(deps_map[pkg.uuid], PackageSpec(name, uuid, vspec))
    end
    if project.version !== nothing
        pkg.version = project.version
    else
        # @warn("project file for $(pkg.name) is missing a `version` entry")
        pkg.version = VersionNumber(0)
    end
    return
end

is_tracking_path(pkg) = pkg.path !== nothing
is_tracking_repo(pkg) = pkg.repo.source !== nothing
is_tracking_registry(pkg) = !is_tracking_path(pkg) && !is_tracking_repo(pkg)
isfixed(pkg) = !is_tracking_registry(pkg) || pkg.pinned

function collect_developed!(ctx::Context, pkg::PackageSpec, developed::Vector{PackageSpec})
    source = project_rel_path(ctx, source_path(ctx, pkg))
    source_ctx = Context(env = EnvCache(projectfile_path(source)))
    pkgs = load_all_deps(source_ctx)
    for pkg in filter(is_tracking_path, pkgs)
        if any(x -> x.uuid == pkg.uuid, developed)
            continue
        end
        # normalize path
        pkg.path = Types.relative_project_path(ctx, project_rel_path(source_ctx, source_path(source_ctx, pkg)))
        push!(developed, pkg)
        collect_developed!(ctx, pkg, developed)
    end
end

function collect_developed(ctx::Context, pkgs::Vector{PackageSpec})
    developed = PackageSpec[]
    for pkg in filter(is_tracking_path, pkgs)
        collect_developed!(ctx, pkg, developed)
    end
    return developed
end

function collect_fixed!(ctx::Context, pkgs::Vector{PackageSpec}, names::Dict{UUID, String})
    deps_map = Dict{UUID,Vector{PackageSpec}}()
    if ctx.env.pkg !== nothing
        pkg = ctx.env.pkg
        collect_project!(ctx, pkg, dirname(ctx.env.project_file), deps_map)
        names[pkg.uuid] = pkg.name
    end
    for pkg in pkgs
        path = project_rel_path(ctx, source_path(ctx, pkg))
        if !isdir(path)
            pkgerror("expected package $(err_rep(pkg)) to exist at path `$path`")
        end
        collect_project!(ctx, pkg, path, deps_map)
    end

    fixed = Dict{UUID,Resolve.Fixed}()
    # Collect the dependencies for the fixed packages
    for (uuid, deps) in deps_map
        q = Dict{UUID, VersionSpec}()
        for dep in deps
            names[dep.uuid] = dep.name
            q[dep.uuid] = dep.version
        end
        if Types.is_project_uuid(ctx, uuid)
            fix_pkg = ctx.env.pkg
        else
            idx = findfirst(pkg -> pkg.uuid == uuid, pkgs)
            fix_pkg = pkgs[idx]
        end
        fixed[uuid] = Resolve.Fixed(fix_pkg.version, q)
    end
    return fixed
end


function project_compatibility(ctx::Context, name::String)
    return VersionSpec(Types.semver_spec(get(ctx.env.project.compat, name, ">= 0")))
end

# Resolve a set of versions given package version specs
# looks at uuid, version, repo/path,
# sets version to a VersionNumber
# adds any other packages which may be in the dependency graph
# all versioned packges should have a `tree_hash`
function resolve_versions!(ctx::Context, pkgs::Vector{PackageSpec})
    # compatibility
    if ctx.julia_version !== nothing
        ctx.env.manifest.julia_version = ctx.julia_version
        v = intersect(ctx.julia_version, project_compatibility(ctx, "julia"))
        if isempty(v)
            @warn "julia version requirement for project not satisfied" _module=nothing _file=nothing
        end
    else
        ctx.env.manifest.julia_version = VERSION
    end
    names = Dict{UUID, String}(uuid => stdlib for (uuid, stdlib) in stdlibs())
    # recursive search for packages which are tracking a path
    developed = collect_developed(ctx, pkgs)
    # But we only want to use information for those packages that we don't know about
    for pkg in developed
        if !any(x -> x.uuid == pkg.uuid, pkgs)
            push!(pkgs, pkg)
        end
    end
    # this also sets pkg.version for fixed packages
    fixed = collect_fixed!(ctx, filter(!is_tracking_registry, pkgs), names)
    # non fixed packages are `add`ed by version: their version is either restricted or free
    # fixed packages are `dev`ed or `add`ed by repo
    # at this point, fixed packages have a version and `deps`

    @assert length(Set(pkg.uuid::UUID for pkg in pkgs)) == length(pkgs)

    # check compat
    for pkg in pkgs
        compat = project_compatibility(ctx, pkg.name)
        v = intersect(pkg.version, compat)
        if isempty(v)
            throw(Resolve.ResolverError(
                "empty intersection between $(pkg.name)@$(pkg.version) and project compatibility $(compat)"))
        end
        # Work around not clobbering 0.x.y+ for checked out old type of packages
        if !(pkg.version isa VersionNumber)
            pkg.version = v
        end
    end

    for pkg in pkgs
        names[pkg.uuid] = pkg.name
    end
    reqs = Resolve.Requires(pkg.uuid => VersionSpec(pkg.version) for pkg in pkgs)
    graph, deps_map = deps_graph(ctx, names, reqs, fixed)
    Resolve.simplify_graph!(graph)
    vers = Resolve.resolve(graph)

    find_registered!(ctx, collect(keys(vers)))
    # update vector of package versions
    for (uuid, ver) in vers
        idx = findfirst(p -> p.uuid == uuid, pkgs)
        if idx !== nothing
            pkg = pkgs[idx]
            # Fixed packages are not returned by resolve (they already have their version set)
            pkg.version = vers[pkg.uuid]
        else
            name = is_stdlib(uuid) ? stdlibs()[uuid] : registered_name(ctx, uuid)
            push!(pkgs, PackageSpec(;name=name, uuid=uuid, version=ver))
        end
    end
    # TODO: We already parse the Versions.toml file for each package in deps_graph but this
    # function ends up reparsing it. Consider caching the earlier result.
    load_tree_hashes!(ctx, pkgs)
    final_deps_map = Dict{UUID, Dict{String, UUID}}()
    for pkg in pkgs
        deps = begin
            if pkg.uuid in keys(fixed)
                deps_fixed = Dict{String, UUID}()
                for dep in keys(fixed[pkg.uuid].requires)
                    deps_fixed[names[dep]] = dep
                end
                deps_fixed
            else
                deps_map[pkg.uuid][pkg.version]
            end
        end
        # julia is an implicit dependency
        filter!(d -> d.first != "julia", deps)
        final_deps_map[pkg.uuid] = deps
    end
    return final_deps_map
end

get_or_make!(d::Dict{K,V}, k::K) where {K,V} = get!(d, k) do; V() end

function deps_graph(ctx::Context, uuid_to_name::Dict{UUID,String}, reqs::Resolve.Requires, fixed::Dict{UUID,Resolve.Fixed})
    uuids = collect(union(keys(reqs), keys(fixed), map(fx->keys(fx.requires), values(fixed))...))
    seen = UUID[]

    all_versions = VersionsDict()
    all_deps     = DepsDict()
    all_compat   = CompatDict()

    for (fp, fx) in fixed
        all_versions[fp] = Set([fx.version])
        all_deps[fp]     = Dict(fx.version => valtype(DepsValDict)())
        all_compat[fp]   = Dict(fx.version => valtype(CompatValDict)())
    end

    while true
        unseen = setdiff(uuids, seen)
        isempty(unseen) && break
        for uuid in unseen
            push!(seen, uuid)
            uuid in keys(fixed) && continue
            all_versions_u = get_or_make!(all_versions, uuid)
            all_deps_u     = get_or_make!(all_deps,     uuid)
            all_compat_u   = get_or_make!(all_compat,   uuid)

            # If we're requesting resolution of a package that is an stdlib and is not registered,
            # we must special-case it here.  This is further complicated by the fact that we can
            # ask this question relative to a particular Julia version.
            if is_unregistered_stdlib(uuid) || is_stdlib(uuid, ctx.julia_version)
                path = Types.stdlib_path(stdlibs()[uuid])
                proj_file = projectfile_path(path; strict=true)
                @assert proj_file !== nothing
                proj = read_package(proj_file)

                v = something(proj.version, VERSION)
                push!(all_versions_u, v)

                all_deps_u_vr = get_or_make!(all_deps_u, v)
                for (name, other_uuid) in proj.deps
                    all_deps_u_vr[name] = other_uuid
                    other_uuid in uuids || push!(uuids, other_uuid)
                end

                # TODO look at compat section for stdlibs?
                all_compat_u_vr = get_or_make!(all_compat_u, v)
                for (name, other_uuid) in proj.deps
                    all_compat_u_vr[name] = VersionSpec()
                end
            else
                for path in registered_paths(ctx, uuid)
                    version_info = load_versions(ctx, path; include_yanked=false)
                    versions = sort!(collect(keys(version_info)))
                    deps_data = load_package_data(ctx, UUID, joinpath(path, "Deps.toml"), versions)
                    compat_data = load_package_data(ctx, VersionSpec, joinpath(path, "Compat.toml"), versions)

                    union!(all_versions_u, versions)

                    for (vr, dd) in deps_data
                        all_deps_u_vr = get_or_make!(all_deps_u, vr)
                        for (name,other_uuid) in dd
                            # check conflicts??
                            all_deps_u_vr[name] = other_uuid
                            other_uuid in uuids || push!(uuids, other_uuid)
                        end
                    end
                    for (vr, cd) in compat_data
                        all_compat_u_vr = get_or_make!(all_compat_u, vr)
                        for (name,vs) in cd
                            # check conflicts??
                            all_compat_u_vr[name] = vs
                        end
                    end
                end
            end
        end
        find_registered!(ctx, uuids)
    end

    for uuid in uuids
        if !haskey(uuid_to_name, uuid)
            name = registered_name(ctx, uuid)
            name === nothing && pkgerror("cannot find name corresponding to UUID $(uuid) in a registry")
            uuid_to_name[uuid] = name
            entry = manifest_info(ctx, uuid)
            entry ≡ nothing && continue
            uuid_to_name[uuid] = entry.name
        end
    end

    return Resolve.Graph(all_versions, all_deps, all_compat, uuid_to_name, reqs, fixed, #=verbose=# ctx.graph_verbose, ctx.julia_version),
           all_deps
end

function load_urls(ctx::Context, pkgs::Vector{PackageSpec})
    urls = Dict{UUID,Vector{String}}()
    for pkg in pkgs
        uuid = pkg.uuid
        ver = pkg.version::VersionNumber
        urls[uuid] = String[]
        for path in registered_paths(ctx, uuid)
            info = parse_toml(joinpath(path, "Package.toml"))
            repo = info["repo"]
            repo in urls[uuid] || push!(urls[uuid], repo)
        end
    end
    foreach(sort!, values(urls))
    return urls
end

########################
# Package installation #
########################

function get_archive_url_for_version(url::String, ref)
    if (m = match(r"https://github.com/(.*?)/(.*?).git", url)) !== nothing
        return "https://api.github.com/repos/$(m.captures[1])/$(m.captures[2])/tarball/$(ref)"
    end
    return nothing
end

# Returns if archive successfully installed
function install_archive(
    urls::Vector{Pair{String,Bool}},
    hash::SHA1,
    version_path::String;
    io::IO=stderr_f()
)::Bool
    tmp_objects = String[]
    url_success = false
    for (url, top) in urls
        path = tempname() * randstring(6)
        push!(tmp_objects, path) # for cleanup
        url_success = true
        try
            PlatformEngines.download(url, path; verbose=false, io=io)
        catch e
            e isa InterruptException && rethrow()
            url_success = false
        end
        url_success || continue
        dir = joinpath(tempdir(), randstring(12))
        push!(tmp_objects, dir) # for cleanup
        # Might fail to extract an archive (Pkg#190)
        try
            unpack(path, dir; verbose=false)
        catch e
            e isa InterruptException && rethrow()
            @warn "failed to extract archive downloaded from $(url)"
            url_success = false
        end
        url_success || continue
        if top
            unpacked = dir
        else
            dirs = readdir(dir)
            # 7z on Win might create this spurious file
            filter!(x -> x != "pax_global_header", dirs)
            @assert length(dirs) == 1
            unpacked = joinpath(dir, dirs[1])
        end
        # Assert that the tarball unpacked to the tree sha we wanted
        # TODO: Enable on Windows when tree_hash handles
        # executable bits correctly, see JuliaLang/julia #33212.
        if !Sys.iswindows()
            if SHA1(GitTools.tree_hash(unpacked)) != hash
                @warn "tarball content does not match git-tree-sha1"
                url_success = false
            end
            url_success || continue
        end
        # Move content to version path
        !isdir(version_path) && mkpath(version_path)
        mv(unpacked, version_path; force=true)
        break # successful install
    end
    # Clean up and exit
    foreach(x -> Base.rm(x; force=true, recursive=true), tmp_objects)
    return url_success
end

const refspecs = ["+refs/*:refs/remotes/cache/*"]
function install_git(
    ctx::Context,
    uuid::UUID,
    name::String,
    hash::SHA1,
    urls::Vector{String},
    version::Union{VersionNumber,Nothing},
    version_path::String
)::Nothing
    repo = nothing
    tree = nothing
    # TODO: Consolodate this with some of the repo handling in Types.jl
    try
        clones_dir = joinpath(depots1(), "clones")
        ispath(clones_dir) || mkpath(clones_dir)
        repo_path = joinpath(clones_dir, string(uuid))
        repo = GitTools.ensure_clone(ctx, repo_path, urls[1]; isbare=true,
                                     header = "[$uuid] $name from $(urls[1])")
        git_hash = LibGit2.GitHash(hash.bytes)
        for url in urls
            try LibGit2.with(LibGit2.GitObject, repo, git_hash) do g
                end
                break # object was found, we can stop
            catch err
                err isa LibGit2.GitError && err.code == LibGit2.Error.ENOTFOUND || rethrow()
            end
            GitTools.fetch(ctx, repo, url, refspecs=refspecs)
        end
        tree = try
            LibGit2.GitObject(repo, git_hash)
        catch err
            err isa LibGit2.GitError && err.code == LibGit2.Error.ENOTFOUND || rethrow()
            error("$name: git object $(string(hash)) could not be found")
        end
        tree isa LibGit2.GitTree ||
            error("$name: git object $(string(hash)) should be a tree, not $(typeof(tree))")
        mkpath(version_path)
        GitTools.checkout_tree_to_path(repo, tree, version_path)
        return
    finally
        repo !== nothing && LibGit2.close(repo)
        tree !== nothing && LibGit2.close(tree)
    end
end

function download_artifacts(ctx::Context, pkgs::Vector{PackageSpec};
                            platform::AbstractPlatform=HostPlatform(),
                            julia_version = VERSION,
                            verbose::Bool=false,
                            io::IO=DEFAULT_IO[])
    # Filter out packages that have no source_path()
    # pkg_roots = String[p for p in source_path.((ctx,), pkgs) if p !== nothing]  # this runs up against inference limits?
    pkg_roots = String[]
    for pkg in pkgs
        p = source_path(ctx, pkg)
        p !== nothing && push!(pkg_roots, p)
    end
    return download_artifacts(ctx, pkg_roots; platform=platform, verbose=verbose, io=io)
end

function download_artifacts(ctx::Context, pkg_roots::Vector{String};
                            platform::AbstractPlatform=HostPlatform(),
                            verbose::Bool=false,
                            io::IO=stderr_f())
    # List of Artifacts.toml files that we're going to download from
    artifacts_tomls = String[]

    for path in pkg_roots
        # Check to see if this package has an (Julia)Artifacts.toml
        for f in artifact_names
            artifacts_toml = joinpath(path, f)
            if isfile(artifacts_toml)
                push!(artifacts_tomls, artifacts_toml)
                break
            end
        end
    end

    if !isempty(artifacts_tomls)
        for artifacts_toml in artifacts_tomls
            ensure_all_artifacts_installed(artifacts_toml; platform=platform, verbose=verbose, quiet_download=!(stderr isa Base.TTY))
            write_env_usage(artifacts_toml, "artifact_usage.toml")
        end
    end
end

function check_artifacts_downloaded(pkg_root::String; platform::AbstractPlatform=HostPlatform())
    for f in artifact_names
        artifacts_toml = joinpath(pkg_root, f)
        if isfile(artifacts_toml)
            hashes = extract_all_hashes(artifacts_toml)
            if !all(artifact_exists.(hashes))
                return false
            end
            break
        end
    end
    return true
end

# install & update manifest
function download_source(ctx::Context, pkgs::Vector{PackageSpec}; readonly=true)
    pkgs = filter(p -> tracking_registered_version(p, ctx.julia_version), pkgs)
    urls = load_urls(ctx, pkgs)
    return download_source(ctx, pkgs, urls; readonly=readonly)
end

function download_source(ctx::Context, pkgs::Vector{PackageSpec},
                         urls::Dict{UUID, Vector{String}}; readonly=true)
    new_pkgs = PackageSpec[]

    pkgs_to_install = Tuple{PackageSpec, String}[]
    for pkg in pkgs
        path = source_path(ctx, pkg)
        if ispath(path)
            continue
        end
        push!(pkgs_to_install, (pkg, path))
        push!(new_pkgs, pkg)
    end

    widths = [textwidth(pkg.name) for (pkg, _) in pkgs_to_install]
    max_name = maximum(widths; init=0)

    ########################################
    # Install from archives asynchronously #
    ########################################

    missed_packages = Tuple{PackageSpec, String}[]

    @sync begin
        jobs = Channel{eltype(pkgs_to_install)}(ctx.num_concurrent_downloads)
        results = Channel(ctx.num_concurrent_downloads)

        @async begin
            for pkg in pkgs_to_install
                put!(jobs, pkg)
            end
        end

        for i in 1:ctx.num_concurrent_downloads
            @async begin
                for (pkg, path) in jobs
                    if ctx.use_libgit2_for_all_downloads
                        put!(results, (pkg, false, path))
                        continue
                    end
                    try
                        archive_urls = Pair{String,Bool}[]
                        if (server = pkg_server()) !== nothing
                            url = "$server/package/$(pkg.uuid)/$(pkg.tree_hash)"
                            push!(archive_urls, url => true)
                        end
                        for repo_url in urls[pkg.uuid]
                            url = get_archive_url_for_version(repo_url, pkg.tree_hash)
                            url !== nothing && push!(archive_urls, url => false)
                        end
                        success = install_archive(archive_urls, pkg.tree_hash, path, io=ctx.io)
                        if success && readonly
                            set_readonly(path) # In add mode, files should be read-only
                        end
                        if ctx.use_only_tarballs_for_downloads && !success
                            pkgerror("failed to get tarball from $(urls[pkg.uuid])")
                        end
                        put!(results, (pkg, success, path))
                    catch err
                        put!(results, (pkg, err, catch_backtrace()))
                    end
                end
            end
        end

        bar = MiniProgressBar(; indent=2, header = "Progress", color = Base.info_color(),
                                  percentage=false, always_reprint=true)
        bar.max = length(pkgs_to_install)
        fancyprint = can_fancyprint(ctx.io)
        fancyprint && start_progress(ctx.io, bar)
        try
            for i in 1:length(pkgs_to_install)
                pkg::PackageSpec, exc_or_success, bt_or_path = take!(results)
                exc_or_success isa Exception && pkgerror("Error when installing package $(pkg.name):\n",
                                                        sprint(Base.showerror, exc_or_success, bt_or_path))
                success, path = exc_or_success, bt_or_path
                success || push!(missed_packages, (pkg, path))
                bar.current = i
                str = sprint(; context=ctx.io) do io
                    if success
                        fancyprint && print_progress_bottom(io)
                        vstr = pkg.version !== nothing ? "v$(pkg.version)" : "[$h]"
                        printpkgstyle(io, :Installed, string(rpad(pkg.name * " ", max_name + 2, "─"), " ", vstr))
                        fancyprint && show_progress(io, bar)
                    end
                end
                print(ctx.io, str)
            end
        finally
            fancyprint && end_progress(ctx.io, bar)
            close(jobs)
        end
    end

    ##################################################
    # Use LibGit2 to download any remaining packages #
    ##################################################
    for (pkg, path) in missed_packages
        uuid = pkg.uuid
        install_git(ctx, pkg.uuid, pkg.name, pkg.tree_hash, urls[uuid], pkg.version::VersionNumber, path)
        readonly && set_readonly(path)
        vstr = pkg.version !== nothing ? "v$(pkg.version)" : "[$h]"
        printpkgstyle(ctx, :Installed, string(rpad(pkg.name * " ", max_name + 2, "─"), " ", vstr))
    end

    return new_pkgs
end

################################
# Manifest update and pruning #
################################
project_rel_path(ctx::Context, path::String) =
    project_rel_path(dirname(ctx.env.project_file), path)
project_rel_path(project::String, path::String) = normpath(joinpath(project, path))

function prune_manifest(ctx::Context)
    keep = collect(values(ctx.env.project.deps))
    ctx.env.manifest = prune_manifest(ctx.env.manifest, keep)
end

function prune_manifest(manifest::Manifest, keep::Vector{UUID})
    while !isempty(keep)
        clean = true
        for (uuid, entry) in manifest
            uuid in keep || continue
            for dep in values(entry.deps)
                dep in keep && continue
                push!(keep, dep)
                clean = false
            end
        end
        clean && break
    end
    manifest.deps = Dict(uuid => entry for (uuid, entry) in manifest if uuid in keep)
    return manifest
end

function any_package_not_installed(ctx)
    for (uuid, entry) in ctx.env.manifest
        if Base.locate_package(Base.PkgId(uuid, entry.name)) === nothing
            return true
        end
    end
    return false
end

#########
# Build #
#########
function _get_deps!(ctx::Context, pkgs::Vector{PackageSpec}, uuids::Vector{UUID})
    for pkg in pkgs
        is_stdlib(pkg.uuid) && continue
        pkg.uuid in uuids && continue
        push!(uuids, pkg.uuid)
        if Types.is_project(ctx, pkg)
            pkgs = [PackageSpec(name, uuid) for (name, uuid) in ctx.env.project.deps]
        else
            info = manifest_info(ctx, pkg.uuid)
            if info === nothing
                pkgerror("could not find manifest entry for package $(err_rep(pkg))")
            end
            pkgs = [PackageSpec(name, uuid) for (name, uuid) in info.deps]
        end
        _get_deps!(ctx, pkgs, uuids)
    end
    return
end

function build(ctx::Context, pkgs::Vector{PackageSpec}, verbose::Bool)
    if any_package_not_installed(ctx) || !isfile(ctx.env.manifest_file)
        Pkg.instantiate(ctx, allow_build=false, allow_autoprecomp=false)
    end
    uuids = UUID[]
    _get_deps!(ctx, pkgs, uuids)
    build_versions(ctx, uuids; verbose)
end

function dependency_order_uuids(ctx::Context, uuids::Vector{UUID})::Dict{UUID,Int}
    order = Dict{UUID,Int}()
    seen = UUID[]
    k = 0
    function visit(uuid::UUID)
        is_stdlib(uuid) && return
        uuid in seen &&
            return @warn("Dependency graph not a DAG, linearizing anyway")
        haskey(order, uuid) && return
        push!(seen, uuid)
        if Types.is_project_uuid(ctx, uuid)
            deps = values(ctx.env.project.deps)
        else
            entry = manifest_info(ctx, uuid)
            deps = values(entry.deps)
        end
        foreach(visit, deps)
        pop!(seen)
        order[uuid] = k += 1
    end
    visit(uuid::String) = visit(UUID(uuid))
    foreach(visit, uuids)
    return order
end

function gen_build_code(build_file::String)
    code = """
        $(Base.load_path_setup_code(false))
        cd($(repr(dirname(build_file))))
        include($(repr(build_file)))
        """
    return ```
        $(Base.julia_cmd()) -O0 --color=no --history-file=no
        --startup-file=$(Base.JLOptions().startupfile == 1 ? "yes" : "no")
        --compiled-modules=$(Bool(Base.JLOptions().use_compiled_modules) ? "yes" : "no")
        --eval $code
        ```
end

builddir(source_path::String) = joinpath(source_path, "deps")
buildfile(source_path::String) = joinpath(builddir(source_path), "build.jl")
function build_versions(ctx::Context, uuids::Vector{UUID}; verbose=false)
    # collect builds for UUIDs with `deps/build.jl` files
    builds = Tuple{UUID,String,String,VersionNumber}[]
    for uuid in uuids
        is_stdlib(uuid) && continue
        if Types.is_project_uuid(ctx, uuid)
            path = dirname(ctx.env.project_file)
            name = ctx.env.pkg.name
            version = ctx.env.pkg.version
        else
            entry = manifest_info(ctx, uuid)
            if entry === nothing
                error("could not find entry with uuid $uuid in manifest $(ctx.env.manifest_file)")
            end
            name = entry.name
            if entry.tree_hash !== nothing
                path = find_installed(name, uuid, entry.tree_hash)
            elseif entry.path !== nothing
                path = project_rel_path(ctx, entry.path)
            else
                pkgerror("Could not find either `git-tree-sha1` or `path` for package $name")
            end
            version = something(entry.version, v"0.0")
        end
        ispath(path) || error("Build path for $name does not exist: $path")
        ispath(buildfile(path)) && push!(builds, (uuid, name, path, version))
    end
    # toposort builds by dependencies
    order = dependency_order_uuids(ctx, map(first, builds))
    sort!(builds, by = build -> order[first(build)])
    max_name = maximum(build->textwidth(build[2]), builds; init=0)

    bar = MiniProgressBar(; indent=2, header = "Progress", color = Base.info_color(),
                              percentage=false, always_reprint=true)
    bar.max = length(builds)
    fancyprint = can_fancyprint(ctx.io)
    fancyprint && start_progress(ctx.io, bar)

    # build each package versions in a child process
    try
    for (n, (uuid, name, source_path, version)) in enumerate(builds)
        pkg = PackageSpec(;uuid=uuid, name=name, version=version)
        build_file = buildfile(source_path)
        # compatibility shim
        build_project_override = isfile(projectfile_path(builddir(source_path))) ?
            nothing :
            gen_target_project(ctx, pkg, source_path, "build")

        # Put log output in Pkg's scratchspace if the package is content adressed
        # by tree sha and in the build directory if it is tracked by path etc.
        entry = manifest_info(ctx, uuid)
        if entry !== nothing && entry.tree_hash !== nothing
            key = string(entry.tree_hash)
            scratch = joinpath(pkg_scratchpath(), key)
            mkpath(scratch)
            log_file = joinpath(scratch, "build.log")
            # Associate the logfile with the package beeing built
            dict = Dict{String,Any}(scratch => [
                Dict{String,Any}("time" => Dates.now(), "parent_projects" => [projectfile_path(source_path)])
            ])
            open(joinpath(depots1(), "logs", "scratch_usage.toml"), "a") do io
                TOML.print(io, dict)
            end
        else
            log_file = splitext(build_file)[1] * ".log"
        end

        fancyprint && print_progress_bottom(ctx.io)

        printpkgstyle(ctx, :Building,
                      rpad(name * " ", max_name + 1, "─") * "→ " * Types.pathrepr(log_file))
        bar.current = n-1

        fancyprint && show_progress(ctx.io, bar)

        sandbox(ctx, pkg, source_path, builddir(source_path), build_project_override) do
            flush(stdout)
            ok = open(log_file, "w") do log
                std = verbose ? ctx.io : log
                success(pipeline(gen_build_code(buildfile(source_path)),
                                 stdout=std, stderr=std))
            end
            ok && return
            n_lines = isinteractive() ? 100 : 5000
            # TODO: Extract last n  lines more efficiently
            log_lines = readlines(log_file)
            log_show = join(log_lines[max(1, length(log_lines) - n_lines):end], '\n')
            full_log_at, last_lines =
            if length(log_lines) > n_lines
                "\n\nFull log at $log_file",
                ", showing the last $n_lines of log"
            else
                "", ""
            end
            pkgerror("Error building `$(pkg.name)`$last_lines: \n$log_show$full_log_at")
        end
    end
    finally
        fancyprint && end_progress(ctx.io, bar)
    end
    return
end

##############
# Operations #
##############
function rm(ctx::Context, pkgs::Vector{PackageSpec})
    drop = UUID[]
    # find manifest-mode drops
    for pkg in pkgs
        pkg.mode == PKGMODE_MANIFEST || continue
        info = manifest_info(ctx, pkg.uuid)
        if info !== nothing
            pkg.uuid in drop || push!(drop, pkg.uuid)
        else
            str = has_name(pkg) ? pkg.name : string(pkg.uuid)
            @warn("`$str` not in manifest, ignoring")
        end
    end
    # drop reverse dependencies
    while !isempty(drop)
        clean = true
        for (uuid, entry) in ctx.env.manifest
            deps = values(entry.deps)
            isempty(drop ∩ deps) && continue
            uuid ∉ drop || continue
            push!(drop, uuid)
            clean = false
        end
        clean && break
    end
    # find project-mode drops
    for pkg in pkgs
        pkg.mode == PKGMODE_PROJECT || continue
        found = false
        for (name::String, uuid::UUID) in ctx.env.project.deps
            pkg.name == name || pkg.uuid == uuid || continue
            pkg.name == name ||
                error("project file name mismatch for `$uuid`: $(pkg.name) ≠ $name")
            pkg.uuid == uuid ||
                error("project file UUID mismatch for `$name`: $(pkg.uuid) ≠ $uuid")
            uuid in drop || push!(drop, uuid)
            found = true
            break
        end
        found && continue
        str = has_name(pkg) ? pkg.name : string(pkg.uuid)
        @warn("`$str` not in project, ignoring")
    end
    # delete drops from project
    n = length(ctx.env.project.deps)
    filter!(ctx.env.project.deps) do (_, uuid)
        uuid ∉ drop
    end
    if length(ctx.env.project.deps) == n
        println(ctx.io, "No changes")
        return
    end
    # only declare `compat` for remaining direct or `extra` dependencies
    # `julia` is always an implicit direct dependency
    filter!(ctx.env.project.compat) do (name, _)
        name == "julia" || name in keys(ctx.env.project.deps) || name in keys(ctx.env.project.extras)
    end
    deps_names = union(keys(ctx.env.project.deps), keys(ctx.env.project.extras))
    filter!(ctx.env.project.targets) do (target, deps)
        !isempty(filter!(in(deps_names), deps))
    end
    # only keep reachable manifest entires
    prune_manifest(ctx)
    # update project & manifest
    write_env(ctx.env)
    show_update(ctx)
end

update_package_add(ctx::Context, pkg::PackageSpec, ::Nothing, is_dep::Bool) = pkg
function update_package_add(ctx::Context, pkg::PackageSpec, entry::PackageEntry, is_dep::Bool)
    if entry.pinned
        if pkg.version == VersionSpec()
            println(ctx.io, "`$(pkg.name)` is pinned at `v$(entry.version)`: maintaining pinned version")
        end
        return PackageSpec(; uuid=pkg.uuid, name=pkg.name, pinned=true,
                           version=entry.version, tree_hash=entry.tree_hash)
    end
    if entry.path !== nothing || entry.repo.source !== nothing || pkg.repo.source !== nothing
        return pkg # overwrite everything, nothing to copy over
    end
    if is_stdlib(pkg.uuid)
        return pkg # stdlibs are not versioned like other packages
    elseif is_dep && ((isa(pkg.version, VersionNumber) && entry.version == pkg.version) ||
                      (!isa(pkg.version, VersionNumber) && entry.version ∈ pkg.version))
        # leave the package as is at the installed version
        return PackageSpec(; uuid=pkg.uuid, name=pkg.name, version=entry.version,
                           tree_hash=entry.tree_hash)
    end
    # adding a new version not compatible with the old version, so we just overwrite
    return pkg
end

function check_registered(ctx::Context, pkgs::Vector{PackageSpec})
    pkgs = filter(tracking_registered_version, pkgs)
    find_registered!(ctx, UUID[pkg.uuid for pkg in pkgs])
    for pkg in pkgs
        isempty(registered_paths(ctx, pkg.uuid)) || continue
        pkgerror("expected package $(err_rep(pkg)) to be registered")
    end
end

# Check if the package can be added without colliding/overwriting things
function assert_can_add(ctx::Context, pkgs::Vector{PackageSpec})
    for pkg in pkgs
        @assert pkg.name !== nothing && pkg.uuid !== nothing
        # package with the same name exist in the project: assert that they have the same uuid
        get(ctx.env.project.deps, pkg.name, pkg.uuid) == pkg.uuid ||
            pkgerror("refusing to add package $(err_rep(pkg)):",
                     " package `$(pkg.name) = \"$(get(ctx.env.project.deps, pkg.name, pkg.uuid))\"` ",
                     "already exists as a direct dependency")
        # package with the same uuid exist in the project: assert they have the same name
        name = findfirst(==(pkg.uuid), ctx.env.project.deps)
        (name === nothing || name == pkg.name) ||
            pkgerror("refusing to add package $(err_rep(pkg)):",
                     " package `$(pkg.name) = \"$(ctx.env.project.deps[name])\"` ",
                     "already exists as a direct dependency")
        # package with the same uuid exist in the manifest: assert they have the same name
        haskey(ctx.env.manifest, pkg.uuid) && (ctx.env.manifest[pkg.uuid].name != pkg.name) &&
            pkgerror("refusing to add package $(err_rep(pkg)):",
                     " package `$(ctx.env.manifest[pkg.uuid].name) = \"$(pkg.uuid)\"` ",
                     "already exists in the manifest")
    end
end

function tiered_resolve(ctx::Context, pkgs::Vector{PackageSpec})
    try # do not modify existing subgraph
        return targeted_resolve(ctx, pkgs, PRESERVE_ALL)
    catch err
        err isa Resolve.ResolverError || rethrow()
    end
    try # do not modify existing direct deps
        return targeted_resolve(ctx, pkgs, PRESERVE_DIRECT)
    catch err
        err isa Resolve.ResolverError || rethrow()
    end
    try
        return targeted_resolve(ctx, pkgs, PRESERVE_SEMVER)
    catch err
        err isa Resolve.ResolverError || rethrow()
    end
    return targeted_resolve(ctx, pkgs, PRESERVE_NONE)
end

function targeted_resolve(ctx::Context, pkgs::Vector{PackageSpec}, preserve::PreserveLevel)
    if preserve == PRESERVE_ALL
        pkgs = load_all_deps(ctx, pkgs)
    elseif preserve == PRESERVE_DIRECT
        pkgs = load_direct_deps(ctx, pkgs)
    elseif preserve == PRESERVE_SEMVER
        pkgs = load_direct_deps(ctx, pkgs; preserve=preserve)
    elseif preserve == PRESERVE_NONE
        pkgs = load_direct_deps(ctx, pkgs; preserve=preserve)
    end
    check_registered(ctx, pkgs)
    deps_map = resolve_versions!(ctx, pkgs)
    return pkgs, deps_map
end

function _resolve(ctx::Context, pkgs::Vector{PackageSpec}, preserve::PreserveLevel)
    printpkgstyle(ctx, :Resolving, "package versions...")
    return preserve == PRESERVE_TIERED ?
        tiered_resolve(ctx, pkgs) :
        targeted_resolve(ctx, pkgs, preserve)
end

function add(ctx::Context, pkgs::Vector{PackageSpec}, new_git=UUID[];
             preserve::PreserveLevel=PRESERVE_TIERED, platform::AbstractPlatform=HostPlatform())
    assert_can_add(ctx, pkgs)
    # load manifest data
    for (i, pkg) in pairs(pkgs)
        entry = manifest_info(ctx, pkg.uuid)
        pkgs[i] = update_package_add(ctx, pkg, entry, is_dep(ctx, pkg))
    end
    foreach(pkg -> ctx.env.project.deps[pkg.name] = pkg.uuid, pkgs) # update set of deps
    # resolve
    pkgs, deps_map = _resolve(ctx, pkgs, preserve)
    update_manifest!(ctx, pkgs, deps_map)
    new_apply = download_source(ctx, pkgs)

    # After downloading resolutionary packages, search for (Julia)Artifacts.toml files
    # and ensure they are all downloaded and unpacked as well:
    download_artifacts(ctx, pkgs; platform=platform, io=ctx.io)

    write_env(ctx.env) # write env before building
    show_update(ctx)
    build_versions(ctx, union(UUID[pkg.uuid for pkg in new_apply], new_git))
end

# Input: name, uuid, and path
function develop(ctx::Context, pkgs::Vector{PackageSpec}, new_git::Vector{UUID};
                 preserve::PreserveLevel=PRESERVE_TIERED, platform::AbstractPlatform=HostPlatform())
    assert_can_add(ctx, pkgs)
    # no need to look at manifest.. dev will just nuke whatever is there before
    for pkg in pkgs
        ctx.env.project.deps[pkg.name] = pkg.uuid
    end
    # resolve & apply package versions
    pkgs, deps_map = _resolve(ctx, pkgs, preserve)
    update_manifest!(ctx, pkgs, deps_map)
    new_apply = download_source(ctx, pkgs; readonly=true)
    download_artifacts(ctx, pkgs; platform=platform, io=ctx.io)
    write_env(ctx.env) # write env before building
    show_update(ctx)
    build_versions(ctx, union(UUID[pkg.uuid for pkg in new_apply], new_git))
end

# load version constraint
# if version isa VersionNumber -> set tree_hash too
up_load_versions!(ctx::Context, pkg::PackageSpec, ::Nothing, level::UpgradeLevel) = false
function up_load_versions!(ctx::Context, pkg::PackageSpec, entry::PackageEntry, level::UpgradeLevel)
    entry.version !== nothing || return false # no version to set
    if entry.pinned || level == UPLEVEL_FIXED
        pkg.version = entry.version
        pkg.tree_hash = entry.tree_hash
    elseif entry.repo.source !== nothing # repo packages have a version but are treated special
        pkg.repo = entry.repo
        if level == UPLEVEL_MAJOR
            # Updating a repo package is equivalent to adding it
            new = Types.handle_repo_add!(ctx, pkg)
            pkg.version = entry.version
            if pkg.tree_hash != entry.tree_hash
                # TODO parse find_installed and set new version
            end
            return new
        else
            pkg.version = entry.version
            pkg.tree_hash = entry.tree_hash
        end
    else
        ver = entry.version
        r = level == UPLEVEL_PATCH ? VersionRange(ver.major, ver.minor) :
            level == UPLEVEL_MINOR ? VersionRange(ver.major) :
            level == UPLEVEL_MAJOR ? VersionRange() :
                error("unexpected upgrade level: $level")
        pkg.version = VersionSpec(r)
    end
    return false
end

up_load_manifest_info!(pkg::PackageSpec, ::Nothing) = nothing
function up_load_manifest_info!(pkg::PackageSpec, entry::PackageEntry)
    pkg.name = entry.name # TODO check name is same
    pkg.repo = entry.repo # TODO check that repo is same
    pkg.path = entry.path
    pkg.pinned = entry.pinned
    # `pkg.version` and `pkg.tree_hash` is set by `up_load_versions!`
end

function up(ctx::Context, pkgs::Vector{PackageSpec}, level::UpgradeLevel)
    new_git = UUID[]
    # TODO check all pkg.version == VersionSpec()
    # set version constraints according to `level`
    for pkg in pkgs
        new = up_load_versions!(ctx, pkg, manifest_info(ctx, pkg.uuid), level)
        new && push!(new_git, pkg.uuid) #TODO put download + push! in utility function
    end
    # load rest of manifest data (except for version info)
    for pkg in pkgs
        up_load_manifest_info!(pkg, manifest_info(ctx, pkg.uuid))
    end
    pkgs = load_direct_deps(ctx, pkgs; preserve = (level == UPLEVEL_FIXED ? PRESERVE_NONE : PRESERVE_DIRECT))
    check_registered(ctx, pkgs)
    deps_map = resolve_versions!(ctx, pkgs)
    update_manifest!(ctx, pkgs, deps_map)
    new_apply = download_source(ctx, pkgs)
    download_artifacts(ctx, pkgs; io=ctx.io)
    write_env(ctx.env) # write env before building
    show_update(ctx)
    build_versions(ctx, union(UUID[pkg.uuid for pkg in new_apply], new_git))
end

function update_package_pin!(ctx::Context, pkg::PackageSpec, entry::PackageEntry)
    if entry.pinned && pkg.version == VersionSpec()
        println(ctx.io, "package $(err_rep(pkg)) already pinned")
    end
    # update pinned package
    pkg.pinned = true
    if is_stdlib(pkg.uuid)
        return nothing # nothing left to do
    elseif pkg.version == VersionSpec()
        pkg.version = entry.version # pin at current version
        pkg.repo = entry.repo
        pkg.tree_hash = entry.tree_hash
        pkg.path = entry.path
    else # given explicit registered version
        if entry.repo.source !== nothing || entry.path !== nothing
            # A pin in this case includes an implicit `free` to switch to tracking registered versions
            # First, make sure the package is registered so we have something to free to
            if isempty(registered_paths(ctx, pkg.uuid))
                pkgerror("unable to pin unregistered package $(err_rep(pkg)) to an arbritrary version")
            end
        end
    end
end

function update_package_pin!(ctx::Context, pkg::PackageSpec, ::Nothing)
    pkgerror("package $(err_rep(pkg)) not found in the manifest, run `Pkg.resolve()` and retry.")
end

function pin(ctx::Context, pkgs::Vector{PackageSpec})
    foreach(pkg -> update_package_pin!(ctx, pkg, manifest_info(ctx, pkg.uuid)), pkgs)
    pkgs = load_direct_deps(ctx, pkgs)
    check_registered(ctx, pkgs)

    pkgs, deps_map = _resolve(ctx, pkgs, PRESERVE_TIERED)
    update_manifest!(ctx, pkgs, deps_map)

    new = download_source(ctx, pkgs)
    download_artifacts(ctx, pkgs; io=ctx.io)
    write_env(ctx.env) # write env before building
    show_update(ctx)
    build_versions(ctx, UUID[pkg.uuid for pkg in new])
end

function update_package_free!(ctx::Context, pkg::PackageSpec, entry::PackageEntry)
    if entry.pinned
        pkg.pinned = false
        is_stdlib(pkg.uuid) && return # nothing left to do
        pkg.version = entry.version
        pkg.repo = entry.repo
        pkg.tree_hash = entry.tree_hash
        return
    end
    if entry.path !== nothing || entry.repo.source !== nothing
        # make sure the package is registered so we have something to free to
        if isempty(registered_paths(ctx, pkg.uuid))
            pkgerror("unable to free unregistered package $(err_rep(pkg))")
        end
        return # -> name, uuid
    end
    pkgerror("expected package $(err_rep(pkg)) to be pinned, tracking a path,",
             " or tracking a repository")
end

# TODO: this is two techinically different operations with the same name
# split into two subfunctions ...
function free(ctx::Context, pkgs::Vector{PackageSpec})
    foreach(pkg -> update_package_free!(ctx, pkg, manifest_info(ctx, pkg.uuid)), pkgs)

    if any(pkg -> pkg.version == VersionSpec(), pkgs)
        pkgs = load_direct_deps(ctx, pkgs)
        check_registered(ctx, pkgs)
        pkgs, deps_map = _resolve(ctx, pkgs, PRESERVE_TIERED)
        update_manifest!(ctx, pkgs, deps_map)
        new = download_source(ctx, pkgs)
        download_artifacts(ctx, new; io=ctx.io)
        write_env(ctx.env) # write env before building
        show_update(ctx)
        build_versions(ctx, UUID[pkg.uuid for pkg in new])
    else
        foreach(pkg -> manifest_info(ctx, pkg.uuid).pinned = false, pkgs)
        write_env(ctx.env)
        show_update(ctx)
    end
end

function gen_test_code(testfile::String;
        coverage=false,
        julia_args::Cmd=``,
        test_args::Cmd=``)
    code = """
        $(Base.load_path_setup_code(false))
        cd($(repr(dirname(testfile))))
        append!(empty!(ARGS), $(repr(test_args.exec)))
        include($(repr(testfile)))
        """
    return ```
        $(Base.julia_cmd())
        --code-coverage=$(coverage ? "user" : "none")
        --color=$(Base.have_color === nothing ? "auto" : Base.have_color ? "yes" : "no")
        --compiled-modules=$(Bool(Base.JLOptions().use_compiled_modules) ? "yes" : "no")
        --check-bounds=yes
        --depwarn=$(Base.JLOptions().depwarn == 2 ? "error" : "yes")
        --inline=$(Bool(Base.JLOptions().can_inline) ? "yes" : "no")
        --startup-file=$(Base.JLOptions().startupfile == 1 ? "yes" : "no")
        --track-allocation=$(("none", "user", "all")[Base.JLOptions().malloc_log + 1])
        --threads=$(Threads.nthreads())
        $(julia_args)
        --eval $(code)
    ```
end

function with_temp_env(fn::Function, temp_env::String)
    load_path = copy(LOAD_PATH)
    active_project = Base.ACTIVE_PROJECT[]
    try
        push!(empty!(LOAD_PATH), "@", temp_env)
        Base.ACTIVE_PROJECT[] = nothing
        fn()
    finally
        append!(empty!(LOAD_PATH), load_path)
        Base.ACTIVE_PROJECT[] = active_project
    end
end

# pick out a set of subgraphs and preserve their versions
function sandbox_preserve(ctx::Context, target::PackageSpec, test_project::String)
    env = deepcopy(ctx.env)
    # include root in manifest (in case any dependencies point back to it)
    if env.pkg !== nothing
        env.manifest[env.pkg.uuid] = PackageEntry(;name=env.pkg.name, path=dirname(env.project_file),
                                                  deps=env.project.deps)
    end
    # preserve important nodes
    keep = [target.uuid]
    append!(keep, collect(values(read_project(test_project).deps)))
    # prune and return
    return prune_manifest(env.manifest, keep)
end

abspath!(ctx::Context, manifest::Manifest) =
    abspath!(dirname(ctx.env.project_file), manifest)
function abspath!(project::String, manifest::Manifest)
    for (uuid, entry) in manifest
        if entry.path !== nothing
            entry.path = project_rel_path(project, entry.path)
        end
    end
    return manifest
end

# ctx + pkg used to compute parent dep graph
function sandbox(fn::Function, ctx::Context, target::PackageSpec, target_path::String,
                 sandbox_path::String, sandbox_project_override)
    active_manifest = manifestfile_path(dirname(ctx.env.project_file))
    sandbox_project = projectfile_path(sandbox_path)

    mktempdir() do tmp
        tmp_project  = projectfile_path(tmp)
        tmp_manifest = manifestfile_path(tmp)

        # Copy env info over to temp env
        if sandbox_project_override !== nothing
            Types.write_project(sandbox_project_override, tmp_project)
        elseif isfile(sandbox_project)
            cp(sandbox_project, tmp_project)
            chmod(tmp_project, 0o600)
        end
        # create merged manifest
        # - copy over active subgraph
        # - abspath! to maintain location of all deved nodes
        working_manifest = abspath!(ctx, sandbox_preserve(ctx, target, tmp_project))
        # - copy over fixed subgraphs from test subgraph
        # really only need to copy over "special" nodes
        sandbox_env = Types.EnvCache(projectfile_path(sandbox_path))
        sandbox_manifest = abspath!(sandbox_path, sandbox_env.manifest)
        for (name, uuid) in sandbox_env.project.deps
            entry = get(sandbox_manifest, uuid, nothing)
            if entry !== nothing && isfixed(entry)
                subgraph = prune_manifest(sandbox_manifest, [uuid])
                for (uuid, entry) in subgraph
                    if haskey(working_manifest, uuid)
                        pkgerror("can not merge projects")
                    end
                    working_manifest[uuid] = entry
                end
            end
        end

        Types.write_manifest(working_manifest, tmp_manifest)
        # sandbox
        with_temp_env(tmp) do
            temp_ctx = Context()
            temp_ctx.env.project.deps[target.name] = target.uuid

            try
                Pkg.resolve(temp_ctx; io=devnull)
                @debug "Using _parent_ dep graph"
            catch err# TODO
                @debug err
                @warn "Could not use exact versions of packages in manifest, re-resolving"
                temp_ctx.env.manifest.deps = Dict(uuid => entry for (uuid, entry) in temp_ctx.env.manifest.deps if isfixed(entry))
                Pkg.resolve(temp_ctx; io=devnull)
                @debug "Using _clean_ dep graph"
            end

            # Absolutify stdlibs paths
            for (uuid, entry) in temp_ctx.env.manifest
                if is_stdlib(uuid)
                    entry.path = Types.stdlib_path(entry.name)
                end
            end
            write_env(temp_ctx.env, update_undo = false)

            # Run sandboxed code
            path_sep = Sys.iswindows() ? ';' : ':'
            withenv(fn, "JULIA_LOAD_PATH" => "@$(path_sep)$(tmp)", "JULIA_PROJECT" => nothing)
        end
    end
end

function update_package_test!(pkg::PackageSpec, entry::PackageEntry)
    is_stdlib(pkg.uuid) && return
    pkg.version = entry.version
    pkg.tree_hash = entry.tree_hash
    pkg.repo = entry.repo
    pkg.path = entry.path
    pkg.pinned = entry.pinned
end

# Mostly here to give PkgEval some more coverage for packages
# that still use test/REQUIRE. Ignores version bounds
function parse_REQUIRE(require_path::String)
    packages = String[]
    for entry in eachline(require_path)
        if startswith(entry, '#') || isempty(entry)
            continue
        end
        # For lines like @osx Foo, ignore @osx
        words = split(entry)
        if startswith(words[1], '@')
            popfirst!(words)
        end
        push!(packages, popfirst!(words))
    end
    return packages
end

# "targets" based test deps -> "test/Project.toml" based deps
function gen_target_project(ctx::Context, pkg::PackageSpec, source_path::String, target::String)
    test_project = Types.Project()
    if projectfile_path(source_path; strict=true) === nothing
        # no project file, assuming this is an old REQUIRE package
        test_project.deps = copy(ctx.env.manifest[pkg.uuid].deps)
        if target == "test"
            test_REQUIRE_path = joinpath(source_path, "test", "REQUIRE")
            if isfile(test_REQUIRE_path)
                @warn "using test/REQUIRE files is deprecated and current support is lacking in some areas"
                test_pkgs = parse_REQUIRE(test_REQUIRE_path)
                package_specs = [PackageSpec(name=pkg) for pkg in test_pkgs]
                registry_resolve!(ctx, package_specs)
                stdlib_resolve!(package_specs)
                ensure_resolved(ctx, package_specs, registry=true)
                for spec in package_specs
                    test_project.deps[spec.name] = spec.uuid
                end
            end
        end
        return test_project
    end
    # collect relevant info from source
    source_ctx = Context(env = EnvCache(projectfile_path(source_path)))
    source_env = source_ctx.env
    # collect regular dependencies
    test_project.deps = source_env.project.deps
    # collect test dependencies
    for name in get(source_env.project.targets, target, String[])
        uuid = get(source_env.project.extras, name, nothing)
        if uuid === nothing
            pkgerror("`$name` declared as a `$target` dependency, but no such entry in `extras`")
        end
        test_project.deps[name] = uuid
    end
    # collect compat entries
    for (name, uuid) in test_project.deps
        compat = get(source_env.project.compat, name, nothing)
        compat === nothing && continue
        test_project.compat[name] = compat
    end
    return test_project
end

testdir(source_path::String) = joinpath(source_path, "test")
testfile(source_path::String) = joinpath(testdir(source_path), "runtests.jl")
function test(ctx::Context, pkgs::Vector{PackageSpec};
              coverage=false, julia_args::Cmd=``, test_args::Cmd=``,
              test_fn=nothing)
    Pkg.instantiate(ctx; allow_autoprecomp = false) # do precomp later within sandbox

    # load manifest data
    for pkg in pkgs
        if Types.is_project_uuid(ctx, pkg.uuid)
            pkg.path = dirname(ctx.env.project_file)
            pkg.version = ctx.env.pkg.version
        else
            update_package_test!(pkg, manifest_info(ctx, pkg.uuid))
        end
    end

    # See if we can find the test files for all packages
    missing_runtests = String[]
    source_paths     = String[]
    for pkg in pkgs
        sourcepath = project_rel_path(ctx, source_path(ctx, pkg)) # TODO
        !isfile(testfile(sourcepath)) && push!(missing_runtests, pkg.name)
        push!(source_paths, sourcepath)
    end
    if !isempty(missing_runtests)
        pkgerror(length(missing_runtests) == 1 ? "Package " : "Packages ",
                join(missing_runtests, ", "),
                " did not provide a `test/runtests.jl` file")
    end

    # sandbox
    pkgs_errored = Tuple{String, Base.Process}[]
    for (pkg, source_path) in zip(pkgs, source_paths)
        # compatibility shim between "targets" and "test/Project.toml"
        test_project_override = isfile(projectfile_path(testdir(source_path))) ?
            nothing :
            gen_target_project(ctx, pkg, source_path, "test")
        # now we sandbox
        printpkgstyle(ctx, :Testing, pkg.name)
        sandbox(ctx, pkg, source_path, testdir(source_path), test_project_override) do
            test_fn !== nothing && test_fn()
            sandbox_ctx = Context(;io=ctx.io)
            status(sandbox_ctx; mode=PKGMODE_COMBINED)
            Pkg._auto_precompile(sandbox_ctx)
            printpkgstyle(ctx, :Testing, "Running tests...")
            flush(stdout)
            cmd = gen_test_code(testfile(source_path); coverage=coverage, julia_args=julia_args, test_args=test_args)
            p = run(ignorestatus(cmd))
            if success(p)
                printpkgstyle(ctx, :Testing, pkg.name * " tests passed ")
            else
                push!(pkgs_errored, (pkg.name, p))
            end
        end
    end

    # report errors
    if !isempty(pkgs_errored)
        function reason(p)
            if Base.process_signaled(p)
                " (received signal: " * signal_name(p.termsignal) * ")"
            elseif Base.process_exited(p) && p.exitcode != 1
                " (exit code: " * string(p.exitcode) * ")"
            else
                ""
            end
        end

        if length(pkgs_errored) == 1
            pkg_name, p = first(pkgs_errored)
            pkgerror("Package $pkg_name errored during testing$(reason(p))")
        else
            failures = ["• $pkg_name$(reason(p))" for (pkg_name, p) in pkgs_errored]
            pkgerror("Packages errored during testing:\n", join(failures, "\n"))
        end
    end
end

function package_info(ctx::Context, pkg::PackageSpec)::PackageInfo
    entry = manifest_info(ctx, pkg.uuid)
    if entry === nothing
        pkgerror("expected package $(err_rep(pkg)) to exist in the manifest",
                 " (use `resolve` to populate the manifest)")
    end
    package_info(ctx, pkg, entry)
end

function package_info(ctx::Context, pkg::PackageSpec, entry::PackageEntry)::PackageInfo
    git_source = pkg.repo.source === nothing ? nothing :
        isurl(pkg.repo.source) ? pkg.repo.source :
        project_rel_path(ctx, pkg.repo.source)
    info = PackageInfo(
        name                 = pkg.name,
        version              = pkg.version != VersionSpec() ? pkg.version : nothing,
        tree_hash            = pkg.tree_hash === nothing ? nothing : string(pkg.tree_hash), # TODO or should it just be a SHA?
        is_direct_dep        = pkg.uuid in values(ctx.env.project.deps),
        is_pinned            = pkg.pinned,
        is_tracking_path     = pkg.path !== nothing,
        is_tracking_repo     = pkg.repo.rev !== nothing || pkg.repo.source !== nothing,
        is_tracking_registry = is_tracking_registry(pkg),
        git_revision         = pkg.repo.rev,
        git_source           = git_source,
        source               = project_rel_path(ctx, source_path(ctx, pkg)),
        dependencies         = copy(entry.deps), #TODO is copy needed?
    )
    return info
end

# Display

function stat_rep(x::PackageSpec; name=true)
    name = name ? "$(x.name)" : ""
    version = x.version == VersionSpec() ? "" : "v$(x.version)"
    rev = ""
    if x.repo.rev !== nothing
        rev = occursin(r"\b([a-f0-9]{40})\b", x.repo.rev) ? x.repo.rev[1:7] : x.repo.rev
    end
    subdir_str = x.repo.subdir === nothing ? "" : ":$(x.repo.subdir)"
    repo = Operations.is_tracking_repo(x) ? "`$(x.repo.source)$(subdir_str)#$(rev)`" : ""
    path = Operations.is_tracking_path(x) ? "$(pathrepr(x.path))" : ""
    pinned = x.pinned ? "⚲" : ""
    return join(filter(!isempty, [name,version,repo,path,pinned]), " ")
end

print_single(ctx::Context, pkg::PackageSpec) = print(ctx.io, stat_rep(pkg))

is_instantiated(::Nothing) = false
is_instantiated(x::PackageSpec) = x.version != VersionSpec() || is_stdlib(x.uuid)
# Compare an old and new node of the dependency graph and print a single line to summarize the change
function print_diff(ctx::Context, old::Union{Nothing,PackageSpec}, new::Union{Nothing,PackageSpec})
    if !is_instantiated(old) && is_instantiated(new)
        printstyled(ctx.io, "+ $(stat_rep(new))"; color=:light_green)
    elseif !is_instantiated(new)
        printstyled(ctx.io, "- $(stat_rep(old))"; color=:light_red)
    elseif is_tracking_registry(old) && is_tracking_registry(new) &&
            new.version isa VersionNumber && old.version isa VersionNumber && new.version != old.version
        if new.version > old.version
            printstyled(ctx.io, "↑ $(stat_rep(old)) ⇒ $(stat_rep(new; name=false))"; color=:light_yellow)
        else
            printstyled(ctx.io, "↓ $(stat_rep(old)) ⇒ $(stat_rep(new; name=false))"; color=:light_magenta)
        end
    else
        printstyled(ctx.io, "~ $(stat_rep(old)) ⇒ $(stat_rep(new; name=false))"; color=:light_yellow)
    end
end

function diff_array(old_ctx::Union{Context,Nothing}, new_ctx::Context; manifest=true)
    function index_pkgs(pkgs, uuid)
        idx = findfirst(pkg -> pkg.uuid == uuid, pkgs)
        return idx === nothing ? nothing : pkgs[idx]
    end
    # load deps
    new = manifest ? load_manifest_deps(new_ctx) : load_direct_deps(new_ctx)
    T, S = Union{UUID,Nothing}, Union{PackageSpec,Nothing}
    if old_ctx === nothing
        return Tuple{T,S,S}[(pkg.uuid, nothing, pkg)::Tuple{T,S,S} for pkg in new]
    end
    old = manifest ? load_manifest_deps(old_ctx) : load_direct_deps(old_ctx)
    # merge old and new into single array
    all_uuids = union(T[pkg.uuid for pkg in old], T[pkg.uuid for pkg in new])
    return Tuple{T,S,S}[(uuid, index_pkgs(old, uuid), index_pkgs(new, uuid))::Tuple{T,S,S} for uuid in all_uuids]
end

function is_package_downloaded(ctx, pkg::PackageSpec)
    sourcepath = source_path(ctx, pkg)
    @assert sourcepath !== nothing
    isdir(sourcepath) || return false
    check_artifacts_downloaded(sourcepath) || return false
    return true
end

function print_status(ctx::Context, old_ctx::Union{Nothing,Context}, header::Symbol,
                      uuids::Vector, names::Vector; manifest=true, diff=false, ignore_indent=false)
    not_installed_indicator = sprint((io, args) -> printstyled(io, args...; color=:red), "→", context=ctx.io)
    ctx.io = something(ctx.status_io, ctx.io) # for instrumenting tests
    filter = !isempty(uuids) || !isempty(names)
    # setup
    xs = diff_array(old_ctx, ctx; manifest=manifest)
    # filter and return early if possible
    if isempty(xs) && !diff
        printpkgstyle(ctx, header, "$(pathrepr(manifest ? ctx.env.manifest_file : ctx.env.project_file)) (empty " *
                      (manifest ? "manifest" : "project") * ")", ignore_indent)
        return nothing
    end
    xs = !diff ? xs : eltype(xs)[(id, old, new) for (id, old, new) in xs if old != new]
    if isempty(xs)
        printpkgstyle(ctx, Symbol("No Changes"), "to $(pathrepr(manifest ? ctx.env.manifest_file : ctx.env.project_file))", ignore_indent)
        return nothing
    end
    xs = !filter ? xs : eltype(xs)[(id, old, new) for (id, old, new) in xs if (id in uuids || something(new, old).name in names)]
    if isempty(xs)
        printpkgstyle(ctx, Symbol("No Matches"),
                      "in $(diff ? "diff for " : "")$(pathrepr(manifest ? ctx.env.manifest_file : ctx.env.project_file))", ignore_indent)
        return nothing
    end
    # main print
    printpkgstyle(ctx, header, pathrepr(manifest ? ctx.env.manifest_file : ctx.env.project_file), ignore_indent)
    # Sort stdlibs and _jlls towards the end in status output
    xs = sort!(xs, by = (x -> (is_stdlib(x[1]), endswith(something(x[3], x[2]).name, "_jll"), something(x[3], x[2]).name, x[1])))
    all_packages_downloaded = true
    for (uuid, old, new) in xs
        if Types.is_project_uuid(ctx, uuid)
            continue
        end
        pkg_downloaded = !is_instantiated(new) || is_package_downloaded(ctx, new)
        all_packages_downloaded &= pkg_downloaded
        print(ctx.io, pkg_downloaded ? " " : not_installed_indicator)
        printstyled(ctx.io, " [", string(uuid)[1:8], "] "; color = :light_black)
        diff ? print_diff(ctx, old, new) : print_single(ctx, new)
        println(ctx.io)
    end
    if !all_packages_downloaded
        printpkgstyle(ctx, :Info, "packages marked with $not_installed_indicator not downloaded, use `instantiate` to download", ignore_indent)
    end
    return nothing
end

function git_head_context(ctx, project_dir)
    env = EnvCache()
    return try
        LibGit2.with(LibGit2.GitRepo(project_dir)) do repo
            git_path = LibGit2.path(repo)
            project_path = relpath(ctx.env.project_file, git_path)
            manifest_path = relpath(ctx.env.manifest_file, git_path)
            env.project = read_project(GitTools.git_file_stream(repo, "HEAD:$project_path", fakeit=true))
            env.manifest = read_manifest(GitTools.git_file_stream(repo, "HEAD:$manifest_path", fakeit=true))
            Context(;env=env)
        end
    catch err
        err isa PkgError || rethrow(err)
        nothing
    end
end

function show_update(ctx::Context; ignore_indent=false)
    old_env = EnvCache()
    old_env.project = ctx.env.original_project
    old_env.manifest = ctx.env.original_manifest
    status(ctx; header=:Updating, mode=PKGMODE_COMBINED, env_diff=old_env, ignore_indent=ignore_indent)
    return nothing
end

function status(ctx::Context, pkgs::Vector{PackageSpec}=PackageSpec[];
                header=nothing, mode::PackageMode=PKGMODE_PROJECT, git_diff::Bool=false, env_diff=nothing, ignore_indent=false)
    ctx.io == Base.devnull && return
    # if a package, print header
    if header === nothing && ctx.env.pkg !== nothing
       printpkgstyle(ctx.io, :Project, string(ctx.env.pkg.name, " v", ctx.env.pkg.version); color=Base.info_color())
    end
    # load old ctx
    old_ctx = nothing
    if git_diff
        project_dir = dirname(ctx.env.project_file)
        if !ispath(joinpath(project_dir, ".git"))
            @warn "diff option only available for environments in git repositories, ignoring."
        else
            old_ctx = git_head_context(ctx, project_dir)
            if old_ctx === nothing
                @warn "could not read project from HEAD, displaying absolute status instead."
            end
        end
    elseif env_diff !== nothing
        old_ctx = Context(;env=env_diff)
    end
    # display
    filter_uuids = [pkg.uuid::UUID for pkg in pkgs if pkg.uuid !== nothing]
    filter_names = [pkg.name::String for pkg in pkgs if pkg.name !== nothing]
    diff = old_ctx !== nothing
    header = something(header, diff ? :Diff : :Status)
    if mode == PKGMODE_PROJECT || mode == PKGMODE_COMBINED
        print_status(ctx, old_ctx, header, filter_uuids, filter_names; manifest=false, diff=diff, ignore_indent=ignore_indent)
    end
    if mode == PKGMODE_MANIFEST || mode == PKGMODE_COMBINED
        print_status(ctx, old_ctx, header, filter_uuids, filter_names; diff=diff, ignore_indent=ignore_indent)
    end
end

end # module
