OpenVDB 13.0.0

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Prune.h
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1// Copyright Contributors to the OpenVDB Project
2// SPDX-License-Identifier: Apache-2.0
3//
4/// @file Prune.h
5///
6/// @brief Defined various multi-threaded utility functions for trees
7///
8/// @author Ken Museth
9
10#ifndef OPENVDB_TOOLS_PRUNE_HAS_BEEN_INCLUDED
11#define OPENVDB_TOOLS_PRUNE_HAS_BEEN_INCLUDED
12
13#include <openvdb/math/Math.h> // for isNegative and negative
14#include <openvdb/Types.h>
15#include <openvdb/tree/NodeManager.h>
16#include <openvdb/openvdb.h>
17#include <algorithm> // for std::nth_element()
18#include <type_traits>
19
20 namespace openvdb {
21 OPENVDB_USE_VERSION_NAMESPACE
22 namespace OPENVDB_VERSION_NAME {
23 namespace tools {
24
25/// @brief Reduce the memory footprint of a @a tree by replacing with tiles
26/// any nodes whose values are all the same (optionally to within a tolerance)
27/// and have the same active state.
28///
29/// @note For trees with non-boolean values a child node with (approximately)
30/// constant values are replaced with a tile value corresponding to the median
31/// of the values in said child node.
32///
33/// @param tree the tree to be pruned
34/// @param tolerance tolerance within which values are considered to be equal
35/// @param threaded enable or disable threading (threading is enabled by default)
36/// @param grainSize used to control the threading granularity (default is 1)
37 template<typename TreeT>
38 void
39 prune(TreeT& tree,
40 typename TreeT::ValueType tolerance = zeroVal<typename TreeT::ValueType>(),
41 bool threaded = true,
42 size_t grainSize = 1);
43
44
45/// @brief Reduce the memory footprint of a @a tree by replacing with tiles
46/// any non-leaf nodes whose values are all the same (optionally to within a tolerance)
47/// and have the same active state.
48///
49/// @param tree the tree to be pruned
50/// @param tolerance tolerance within which values are considered to be equal
51/// @param threaded enable or disable threading (threading is enabled by default)
52/// @param grainSize used to control the threading granularity (default is 1)
53 template<typename TreeT>
54 void
55 pruneTiles(TreeT& tree,
56 typename TreeT::ValueType tolerance = zeroVal<typename TreeT::ValueType>(),
57 bool threaded = true,
58 size_t grainSize = 1);
59
60
61/// @brief Reduce the memory footprint of a @a tree by replacing with
62/// background tiles any nodes whose values are all inactive.
63///
64/// @param tree the tree to be pruned
65/// @param threaded enable or disable threading (threading is enabled by default)
66/// @param grainSize used to control the threading granularity (default is 1)
67 template<typename TreeT>
68 void
69 pruneInactive(TreeT& tree, bool threaded = true, size_t grainSize = 1);
70
71
72/// @brief Reduce the memory footprint of a @a tree by replacing any nodes
73/// whose values are all inactive with tiles of the given @a value.
74///
75/// @param tree the tree to be pruned
76/// @param value value assigned to inactive tiles created during pruning
77/// @param threaded enable or disable threading (threading is enabled by default)
78/// @param grainSize used to control the threading granularity (default is 1)
79 template<typename TreeT>
80 void
81 pruneInactiveWithValue(
82 TreeT& tree,
83 const typename TreeT::ValueType& value,
84 bool threaded = true,
85 size_t grainSize = 1);
86
87
88/// @brief Reduce the memory footprint of a @a tree by replacing nodes
89/// whose values are all inactive with inactive tiles having a value equal to
90/// the first value encountered in the (inactive) child.
91/// @details This method is faster than tolerance-based prune and
92/// useful for narrow-band level set applications where inactive
93/// values are limited to either an inside or an outside value.
94///
95/// @param tree the tree to be pruned
96/// @param threaded enable or disable threading (threading is enabled by default)
97/// @param grainSize used to control the threading granularity (default is 1)
98///
99/// @throw ValueError if the background of the @a tree is negative (as defined by math::isNegative)
100 template<typename TreeT>
101 void
102 pruneLevelSet(TreeT& tree,
103 bool threaded = true,
104 size_t grainSize = 1);
105
106
107/// @brief Reduce the memory footprint of a @a tree by replacing nodes whose voxel values
108/// are all inactive with inactive tiles having the value -| @a insideWidth |
109/// if the voxel values are negative and | @a outsideWidth | otherwise.
110///
111/// @details This method is faster than tolerance-based prune and
112/// useful for narrow-band level set applications where inactive
113/// values are limited to either an inside or an outside value.
114///
115/// @param tree the tree to be pruned
116/// @param outsideWidth the width of the outside of the narrow band
117/// @param insideWidth the width of the inside of the narrow band
118/// @param threaded enable or disable threading (threading is enabled by default)
119/// @param grainSize used to control the threading granularity (default is 1)
120///
121/// @throw ValueError if @a outsideWidth is negative or @a insideWidth is
122/// not negative (as defined by math::isNegative).
123 template<typename TreeT>
124 void
125 pruneLevelSet(TreeT& tree,
126 const typename TreeT::ValueType& outsideWidth,
127 const typename TreeT::ValueType& insideWidth,
128 bool threaded = true,
129 size_t grainSize = 1);
130
131
132////////////////////////////////////////////////
133
134
135 template<typename TreeT, Index TerminationLevel = 0>
136 class InactivePruneOp
137{
138 public:
139 using ValueT = typename TreeT::ValueType;
140 using RootT = typename TreeT::RootNodeType;
141 using LeafT = typename TreeT::LeafNodeType;
142 static_assert(RootT::LEVEL > TerminationLevel, "TerminationLevel out of range");
143
144 InactivePruneOp(TreeT& tree) : mValue(tree.background())
145 {
146 tree.clearAllAccessors();//clear cache of nodes that could be pruned
147 }
148
149 InactivePruneOp(TreeT& tree, const ValueT& v) : mValue(v)
150 {
151 tree.clearAllAccessors();//clear cache of nodes that could be pruned
152 }
153
154 // Nothing to do at the leaf node level
155 void operator()(LeafT&) const {}
156
157 // Prune the child nodes of the internal nodes
158 template<typename NodeT>
159 void operator()(NodeT& node) const
160 {
161 if (NodeT::LEVEL > TerminationLevel) {
162 for (typename NodeT::ChildOnIter it=node.beginChildOn(); it; ++it) {
163 if (it->isInactive()) node.addTile(it.pos(), mValue, false);
164 }
165 }
166 }
167
168 // Prune the child nodes of the root node
169 void operator()(RootT& root) const
170 {
171 for (typename RootT::ChildOnIter it = root.beginChildOn(); it; ++it) {
172 if (it->isInactive()) root.addTile(it.getCoord(), mValue, false);
173 }
174 root.eraseBackgroundTiles();
175 }
176
177 private:
178 const ValueT mValue;
179};// InactivePruneOp
180
181
182 template<typename TreeT, Index TerminationLevel = 0>
183 class TolerancePruneOp
184{
185 public:
186 using ValueT = typename TreeT::ValueType;
187 using RootT = typename TreeT::RootNodeType;
188 using LeafT = typename TreeT::LeafNodeType;
189 static_assert(RootT::LEVEL > TerminationLevel, "TerminationLevel out of range");
190
191 TolerancePruneOp(TreeT& tree, const ValueT& tol) : mTolerance(tol)
192 {
193 tree.clearAllAccessors();//clear cache of nodes that could be pruned
194 }
195
196 // Prune the child nodes of the root node
197 inline void operator()(RootT& root) const
198 {
199 ValueT value;
200 bool state;
201 for (typename RootT::ChildOnIter it = root.beginChildOn(); it; ++it) {
202 if (this->isConstant(*it, value, state)) root.addTile(it.getCoord(), value, state);
203 }
204 root.eraseBackgroundTiles();
205 }
206
207 // Prune the child nodes of the internal nodes
208 template<typename NodeT>
209 inline void operator()(NodeT& node) const
210 {
211 if (NodeT::LEVEL > TerminationLevel) {
212 ValueT value;
213 bool state;
214 for (typename NodeT::ChildOnIter it=node.beginChildOn(); it; ++it) {
215 if (this->isConstant(*it, value, state)) node.addTile(it.pos(), value, state);
216 }
217 }
218 }
219
220 // Nothing to do at the leaf node level
221 inline void operator()(LeafT&) const {}
222
223 private:
224 // Private method specialized for leaf nodes
225 inline ValueT median(LeafT& leaf) const {return leaf.medianAll(leaf.buffer().data());}
226
227 // Private method for internal nodes
228 template<typename NodeT>
229 inline typename NodeT::ValueType median(NodeT& node) const
230 {
231 using UnionT = typename NodeT::UnionType;
232 UnionT* data = const_cast<UnionT*>(node.getTable());//never do this at home kids :)
233 static const size_t midpoint = (NodeT::NUM_VALUES - 1) >> 1;
234 auto op = [](const UnionT& a, const UnionT& b){return a.getValue() < b.getValue();};
235 std::nth_element(data, data + midpoint, data + NodeT::NUM_VALUES, op);
236 return data[midpoint].getValue();
237 }
238
239 // Specialization to nodes templated on booleans values
240 template<typename NodeT>
241 inline
242 typename std::enable_if<std::is_same<bool, typename NodeT::ValueType>::value, bool>::type
243 isConstant(NodeT& node, bool& value, bool& state) const
244 {
245 return node.isConstant(value, state, mTolerance);
246 }
247
248 // Nodes templated on non-boolean values
249 template<typename NodeT>
250 inline
251 typename std::enable_if<!std::is_same<bool, typename NodeT::ValueType>::value, bool>::type
252 isConstant(NodeT& node, ValueT& value, bool& state) const
253 {
254 ValueT tmp;
255 const bool test = node.isConstant(value, tmp, state, mTolerance);
256 if (test) value = this->median(node);
257 return test;
258 }
259
260 const ValueT mTolerance;
261};// TolerancePruneOp
262
263
264 template<typename TreeT, Index TerminationLevel = 0>
265 class LevelSetPruneOp
266{
267 public:
268 using ValueT = typename TreeT::ValueType;
269 using RootT = typename TreeT::RootNodeType;
270 using LeafT = typename TreeT::LeafNodeType;
271 static_assert(RootT::LEVEL > TerminationLevel, "TerminationLevel out of range");
272
273 LevelSetPruneOp(TreeT& tree)
274 : mOutside(tree.background())
275 , mInside(math::negative(mOutside))
276 {
277 if (math::isNegative(mOutside)) {
278 OPENVDB_THROW(ValueError,
279 "LevelSetPruneOp: the background value cannot be negative!");
280 }
281 tree.clearAllAccessors();//clear cache of nodes that could be pruned
282 }
283
284 LevelSetPruneOp(TreeT& tree, const ValueT& outside, const ValueT& inside)
285 : mOutside(outside)
286 , mInside(inside)
287 {
288 if (math::isNegative(mOutside)) {
289 OPENVDB_THROW(ValueError,
290 "LevelSetPruneOp: the outside value cannot be negative!");
291 }
292 if (!math::isNegative(mInside)) {
293 OPENVDB_THROW(ValueError,
294 "LevelSetPruneOp: the inside value must be negative!");
295 }
296 tree.clearAllAccessors();//clear cache of nodes that could be pruned
297 }
298
299 // Nothing to do at the leaf node level
300 void operator()(LeafT&) const {}
301
302 // Prune the child nodes of the internal nodes
303 template<typename NodeT>
304 void operator()(NodeT& node) const
305 {
306 if (NodeT::LEVEL > TerminationLevel) {
307 for (typename NodeT::ChildOnIter it=node.beginChildOn(); it; ++it) {
308 if (it->isInactive()) node.addTile(it.pos(), this->getTileValue(it), false);
309 }
310 }
311 }
312
313 // Prune the child nodes of the root node
314 void operator()(RootT& root) const
315 {
316 for (typename RootT::ChildOnIter it = root.beginChildOn(); it; ++it) {
317 if (it->isInactive()) root.addTile(it.getCoord(), this->getTileValue(it), false);
318 }
319 root.eraseBackgroundTiles();
320 }
321
322 private:
323 template <typename IterT>
324 inline ValueT getTileValue(const IterT& iter) const
325 {
326 return math::isNegative(iter->getFirstValue()) ? mInside : mOutside;
327 }
328
329 const ValueT mOutside, mInside;
330};// LevelSetPruneOp
331
332
333 template<typename TreeT>
334 void
335 prune(TreeT& tree, typename TreeT::ValueType tol, bool threaded, size_t grainSize)
336{
337 tree::NodeManager<TreeT, TreeT::DEPTH-2> nodes(tree);
338 TolerancePruneOp<TreeT> op(tree, tol);
339 nodes.foreachBottomUp(op, threaded, grainSize);
340}
341
342
343 template<typename TreeT>
344 void
345 pruneTiles(TreeT& tree, typename TreeT::ValueType tol, bool threaded, size_t grainSize)
346{
347 tree::NodeManager<TreeT, TreeT::DEPTH-3> nodes(tree);
348 TolerancePruneOp<TreeT> op(tree, tol);
349 nodes.foreachBottomUp(op, threaded, grainSize);
350}
351
352
353 template<typename TreeT>
354 void
355 pruneInactive(TreeT& tree, bool threaded, size_t grainSize)
356{
357 tree::NodeManager<TreeT, TreeT::DEPTH-2> nodes(tree);
358 InactivePruneOp<TreeT> op(tree);
359 nodes.foreachBottomUp(op, threaded, grainSize);
360}
361
362
363 template<typename TreeT>
364 void
365 pruneInactiveWithValue(TreeT& tree, const typename TreeT::ValueType& v,
366 bool threaded, size_t grainSize)
367{
368 tree::NodeManager<TreeT, TreeT::DEPTH-2> nodes(tree);
369 InactivePruneOp<TreeT> op(tree, v);
370 nodes.foreachBottomUp(op, threaded, grainSize);
371}
372
373
374 template<typename TreeT>
375 void
376 pruneLevelSet(TreeT& tree,
377 const typename TreeT::ValueType& outside,
378 const typename TreeT::ValueType& inside,
379 bool threaded,
380 size_t grainSize)
381{
382 tree::NodeManager<TreeT, TreeT::DEPTH-2> nodes(tree);
383 LevelSetPruneOp<TreeT> op(tree, outside, inside);
384 nodes.foreachBottomUp(op, threaded, grainSize);
385}
386
387
388 template<typename TreeT>
389 void
390 pruneLevelSet(TreeT& tree, bool threaded, size_t grainSize)
391{
392 tree::NodeManager<TreeT, TreeT::DEPTH-2> nodes(tree);
393 LevelSetPruneOp<TreeT> op(tree);
394 nodes.foreachBottomUp(op, threaded, grainSize);
395}
396
397
398////////////////////////////////////////
399
400
401// Explicit Template Instantiation
402
403#ifdef OPENVDB_USE_EXPLICIT_INSTANTIATION
404
405#ifdef OPENVDB_INSTANTIATE_PRUNE
406#include <openvdb/util/ExplicitInstantiation.h>
407#endif
408
409#define _FUNCTION(TreeT) \
410 void prune(TreeT&, TreeT::ValueType, bool, size_t)
411 OPENVDB_VOLUME_TREE_INSTANTIATE(_FUNCTION)
412#undef _FUNCTION
413
414#define _FUNCTION(TreeT) \
415 void pruneTiles(TreeT&, TreeT::ValueType, bool, size_t)
416 OPENVDB_VOLUME_TREE_INSTANTIATE(_FUNCTION)
417#undef _FUNCTION
418
419#define _FUNCTION(TreeT) \
420 void pruneInactive(TreeT&, bool, size_t)
421 OPENVDB_VOLUME_TREE_INSTANTIATE(_FUNCTION)
422#undef _FUNCTION
423
424#define _FUNCTION(TreeT) \
425 void pruneInactiveWithValue(TreeT&, const TreeT::ValueType&, bool, size_t)
426 OPENVDB_VOLUME_TREE_INSTANTIATE(_FUNCTION)
427#undef _FUNCTION
428
429#define _FUNCTION(TreeT) \
430 void pruneLevelSet(TreeT&, bool, size_t)
431 OPENVDB_REAL_TREE_INSTANTIATE(_FUNCTION)
432#undef _FUNCTION
433
434#define _FUNCTION(TreeT) \
435 void pruneLevelSet(TreeT&, const TreeT::ValueType&, const TreeT::ValueType&, bool, size_t)
436 OPENVDB_REAL_TREE_INSTANTIATE(_FUNCTION)
437#undef _FUNCTION
438
439#endif // OPENVDB_USE_EXPLICIT_INSTANTIATION
440
441
442} // namespace tools
443} // namespace OPENVDB_VERSION_NAME
444} // namespace openvdb
445
446#endif // OPENVDB_TOOLS_PRUNE_HAS_BEEN_INCLUDED
ExplicitInstantiation.h
Math.h
General-purpose arithmetic and comparison routines, most of which accept arbitrary value types (or at...
openvdb::v13_0::ValueError
Definition Exceptions.h:65
openvdb::v13_0::tools::InactivePruneOp
Definition Prune.h:137
openvdb::v13_0::tools::InactivePruneOp::operator()
void operator()(LeafT &) const
Definition Prune.h:155
openvdb::v13_0::tools::InactivePruneOp::RootT
typename TreeT::RootNodeType RootT
Definition Prune.h:140
openvdb::v13_0::tools::InactivePruneOp::LeafT
typename TreeT::LeafNodeType LeafT
Definition Prune.h:141
openvdb::v13_0::tools::InactivePruneOp::operator()
void operator()(NodeT &node) const
Definition Prune.h:159
openvdb::v13_0::tools::InactivePruneOp::operator()
void operator()(RootT &root) const
Definition Prune.h:169
openvdb::v13_0::tools::InactivePruneOp::InactivePruneOp
InactivePruneOp(TreeT &tree)
Definition Prune.h:144
openvdb::v13_0::tools::InactivePruneOp::ValueT
typename TreeT::ValueType ValueT
Definition Prune.h:139
openvdb::v13_0::tools::InactivePruneOp::InactivePruneOp
InactivePruneOp(TreeT &tree, const ValueT &v)
Definition Prune.h:149
openvdb::v13_0::tools::LevelSetPruneOp
Definition Prune.h:266
openvdb::v13_0::tools::LevelSetPruneOp::operator()
void operator()(LeafT &) const
Definition Prune.h:300
openvdb::v13_0::tools::LevelSetPruneOp::LevelSetPruneOp
LevelSetPruneOp(TreeT &tree, const ValueT &outside, const ValueT &inside)
Definition Prune.h:284
openvdb::v13_0::tools::LevelSetPruneOp::LevelSetPruneOp
LevelSetPruneOp(TreeT &tree)
Definition Prune.h:273
openvdb::v13_0::tools::LevelSetPruneOp::RootT
typename TreeT::RootNodeType RootT
Definition Prune.h:269
openvdb::v13_0::tools::LevelSetPruneOp::LeafT
typename TreeT::LeafNodeType LeafT
Definition Prune.h:270
openvdb::v13_0::tools::LevelSetPruneOp::operator()
void operator()(NodeT &node) const
Definition Prune.h:304
openvdb::v13_0::tools::LevelSetPruneOp::operator()
void operator()(RootT &root) const
Definition Prune.h:314
openvdb::v13_0::tools::LevelSetPruneOp::ValueT
typename TreeT::ValueType ValueT
Definition Prune.h:268
openvdb::v13_0::tools::TolerancePruneOp
Definition Prune.h:184
openvdb::v13_0::tools::TolerancePruneOp::operator()
void operator()(LeafT &) const
Definition Prune.h:221
openvdb::v13_0::tools::TolerancePruneOp::RootT
typename TreeT::RootNodeType RootT
Definition Prune.h:187
openvdb::v13_0::tools::TolerancePruneOp::LeafT
typename TreeT::LeafNodeType LeafT
Definition Prune.h:188
openvdb::v13_0::tools::TolerancePruneOp::operator()
void operator()(NodeT &node) const
Definition Prune.h:209
openvdb::v13_0::tools::TolerancePruneOp::operator()
void operator()(RootT &root) const
Definition Prune.h:197
openvdb::v13_0::tools::TolerancePruneOp::ValueT
typename TreeT::ValueType ValueT
Definition Prune.h:186
openvdb::v13_0::tools::TolerancePruneOp::TolerancePruneOp
TolerancePruneOp(TreeT &tree, const ValueT &tol)
Definition Prune.h:191
openvdb::v13_0::tree::NodeManager
To facilitate threading over the nodes of a tree, cache node pointers in linear arrays,...
Definition NodeManager.h:532
openvdb::v13_0::math
Definition Types.h:759
openvdb::v13_0::math::isNegative
bool isNegative(const Type &x)
Return true if x is less than zero.
Definition Math.h:380
openvdb::v13_0::tools::pruneLevelSet
void pruneLevelSet(TreeT &tree, bool threaded=true, size_t grainSize=1)
Reduce the memory footprint of a tree by replacing nodes whose values are all inactive with inactive ...
Definition Prune.h:390
openvdb::v13_0::tools::op
OutGridT XformOp & op
Definition ValueTransformer.h:140
openvdb::v13_0::tools::prune
void prune(TreeT &tree, typename TreeT::ValueType tolerance=zeroVal< typename TreeT::ValueType >(), bool threaded=true, size_t grainSize=1)
Reduce the memory footprint of a tree by replacing with tiles any nodes whose values are all the same...
Definition Prune.h:335
openvdb::v13_0::tools::pruneTiles
void pruneTiles(TreeT &tree, typename TreeT::ValueType tolerance=zeroVal< typename TreeT::ValueType >(), bool threaded=true, size_t grainSize=1)
Reduce the memory footprint of a tree by replacing with tiles any non-leaf nodes whose values are all...
Definition Prune.h:345
openvdb::v13_0::tools::pruneInactiveWithValue
void pruneInactiveWithValue(TreeT &tree, const typename TreeT::ValueType &value, bool threaded=true, size_t grainSize=1)
Reduce the memory footprint of a tree by replacing any nodes whose values are all inactive with tiles...
Definition Prune.h:365
openvdb::v13_0::tools::pruneInactive
void pruneInactive(TreeT &tree, bool threaded=true, size_t grainSize=1)
Reduce the memory footprint of a tree by replacing with background tiles any nodes whose values are a...
Definition Prune.h:355
openvdb::v13_0::tools::threaded
OutGridT XformOp bool threaded
Definition ValueTransformer.h:140
openvdb::v13_0::tree
Definition PointDataGrid.h:170
openvdb
Definition Exceptions.h:13
OPENVDB_THROW
#define OPENVDB_THROW(exception, message)
Definition Exceptions.h:74
Types.h
NodeManager.h
NodeManager produces linear arrays of all tree nodes allowing for efficient threading and bottom-up p...
openvdb.h
OPENVDB_VERSION_NAME
#define OPENVDB_VERSION_NAME
The version namespace name for this library version.
Definition version.h.in:121
OPENVDB_USE_VERSION_NAMESPACE
#define OPENVDB_USE_VERSION_NAMESPACE
Definition version.h.in:218
OPENVDB_REAL_TREE_INSTANTIATE
#define OPENVDB_REAL_TREE_INSTANTIATE(Function)
Definition version.h.in:162
OPENVDB_VOLUME_TREE_INSTANTIATE
#define OPENVDB_VOLUME_TREE_INSTANTIATE(Function)
Definition version.h.in:165