Package: hopach
Version: 1.0.2
Date: 2005-01-01
Title: Hierarchical Ordered Partitioning and Collapsing Hybrid
        (HOPACH)
Author: Katherine S. Pollard <kpollard@soe.ucsc.edu>, with Mark J. van
        der Laan <laan@stat.berkeley.edu>.
Maintainer: Katherine S. Pollard <kpollard@soe.ucsc.edu>
Depends: R (>= 1.8.0), cluster, Biobase
Description: The HOPACH clustering algorithm builds a hierarchical
        tree of clusters by recursively partitioning a data set, while
        ordering and possibly collapsing clusters at each level. The
        algorithm uses the Mean/Median Split Silhouette (MSS) criteria
        to identify the level of the tree with maximally homogeneous
        clusters. It also runs the tree down to produce a final
        ordered list of the elements. The non-parametric bootstrap
        allows one to estimate the probability that each element
        belongs to each cluster (fuzzy clustering). Functions for
        writing output files that can be read by gene clustering
        viewers (e.g.: TreeView, MapleTree, GeneXPress) are included.
License: GPL version 2 or newer
URL: http://www.r-project.org, http://www.stat.berkeley.edu/~laan/,
        http://sourceforge.net/project/showfiles.php?group_id=71407&package_id=70959,
        http://sourceforge.net/projects/mapletree,
        http://genetics.stanford.edu/~alok/TreeView/
Packaged: Fri Feb 18 04:19:32 2005; biocbuild
Built: R 2.1.0; ; 2005-02-22 02:28:32; windows
