annaffyENZYME            package:annaffy            R Documentation

_S_u_b_s_e_t _o_f _a_n_n_o_t_a_t_i_o_n _d_a_t_a _f_i_l_e _f_o_r _E_N_Z_Y_M_E _i_n _t_h_e _h_g_u_9_5_a_v_2 _p_a_c_k_a_g_e

_D_e_s_c_r_i_p_t_i_o_n:

     This is an R environment (hash table like) object containing key
     and value pairs for the mappings between probe identifiers (key)
     and Enzyme Commission numbers (value) with the leading EC: portion
     omitted. Keys can be accessed using ls(name of the environment)
     and values using get(key, name of the environment) or mget(keys,
     name of the environment). Values may be vectors of length 1 or
     greater depending on whether a given probe identifier can be
     associated with only one or more enzyme ids. Mappings between
     probe ids and enzyme ids were obtained their mappings to LocusLink
     ids. NA is assigned to probe identifiers that can not be 
     associated with any enzyme id at this time.

_D_e_t_a_i_l_s:

     Mappings were based on data provided by KEGG

     Source data built: KEGG built: Release 29.0 (January 2004).<URL:
     ftp://ftp.genome.ad.jp/pub/kegg/pathways>. Package built: Wed Jan
     14 22:11:04 2004 Contains 250 randomly selected probes

_R_e_f_e_r_e_n_c_e_s:

     <URL: ftp://ftp.genome.ad.jp/pub/kegg/pathways>

_E_x_a_m_p_l_e_s:

             require("annotate") || stop("annotate unavailable")
             xx <- ls(env = annaffyENZYME)
             if(length(xx) > 0){
                     # Using get for value of the first key
                     get(xx[1], annaffyENZYME )
                     #Using mget for a few keys
                     if(length(xx) >= 3){
                             mget(xx[1:3], annaffyENZYME, ifnotfound=NA )
                             #Using lookUp of annotate(> 1.3.4)
                             lookUp(xx[1:3],"annaffy","ENZYME")
                     }
             }

