$.eSet	eSet-class
$.exprSet	exprSet-class
$.phenoData	phenoData-class
aaMap	aaMap
abstract	miame-class
abstract,exprSet-method	miame-class
abstract,MIAME-method	miame-class
addNonExisting	addVig2Menu
addPDF2Vig	addVig2Menu
addVarMetadataEntry	phenoData-class
addVarMetadataEntry,phenoData,character,character-method	phenoData-class
addVig2Menu	addVig2Menu
addVig4Unix	addVig2Menu
addVig4Win	addVig2Menu
addVigs2WinMenu	addVig2Menu
aggenv	aggregator-class
aggenv,aggregator-method	aggregator-class
aggfun	aggregator-class
aggfun,aggregator-method	aggregator-class
Aggregate	Aggregate
aggregator-class	aggregator-class
annotation	exprSet-class
annotation,exprSet-method	exprSet-class
annotation<-	exprSet-class
annotation<-,exprSet-method	exprSet-class
as.data.frame.exprSet	as.data.frame.exprSet
characterORMIAME	characterORmiame-class
characterORMIAME-class	characterORmiame-class
combine	combine
combine,eSet,ANY-method	eSet-class
combine,eSet,eSet-method	eSet-class
combine,phenoData,ANY-method	combine
combine,phenoData,phenoData-method	combine
container-class	container-class
content	container-class
content,container-method	container-class
contents	contents
contents,environment-method	contents
convertVarLabels	phenoData-class
convertVarLabels,phenoData-method	phenoData-class
copyEnv	copyEnv
copySubstitute	copySubstitute
createPackage	createPackage
description	exprSet-class
description,exprSet-method	exprSet-class
description<-	exprSet-class
description<-,exprSet-method	exprSet-class
dumpPackTxt	dumpPackTxt
eList	eSet-class
eList,eSet-method	eSet-class
eList<-	eSet-class
eList<-,eSet,environment-method	eSet-class
eList<-,eSet,exprList-method	exprList-class
eList<-,eSet,list-method	eSet-class
eMetadata	eSet-class
eMetadata,eSet-method	eSet-class
eMetadata,exprList-method	eSet-class
eMetadata<-	eSet-class
eMetadata<-,eSet,data.frame-method	eSet-class
esApply	esApply
eset	eset
eSet-class	eSet-class
expinfo	miame-class
expinfo,MIAME-method	miame-class
exprList-class	exprList-class
exprListNM-class	eSet-class
exprMatrix-class	exprMatrix-class
exprs	exprSet-class
exprs,eSet-method	eSet-class
exprs,exprSet-method	exprSet-class
exprs2excel	exprSet-class
exprs2excel,exprSet-method	exprSet-class
exprs<-	exprSet-class
exprs<-,exprSet-method	exprSet-class
exprSet	exprSet-class
exprSet-class	exprSet-class
geneCov	geneData
geneData	geneData
geneNames	exprSet-class
geneNames,exprSet-method	exprSet-class
geneNames<-	exprSet-class
geneNames<-,exprSet-method	exprSet-class
getExpData	eSet-class
getExpData,eSet,character-method	eSet-class
getPkgVigs	getPkgVigs
getUnits	phenoData-class
getUnits,phenoData,character-method	phenoData-class
getVarMetadata	phenoData-class
getVarMetadata,phenoData,character,character-method	phenoData-class
getVarMetadata,phenoData,character,missing-method	phenoData-class
hybridizations	miame-class
hybridizations,MIAME-method	miame-class
initfun	aggregator-class
initfun,aggregator-method	aggregator-class
iter	iter-methods
iter,exprSet,character,function-method	iter-methods
iter,exprSet,missing,function-method	iter-methods
iter,exprSet,missing,list-method	iter-methods
iter-methods	iter-methods
l2e	copyEnv
length,container-method	container-class
listLen	copyEnv
locked	container-class
locked,container-method	container-class
MIAME	miame-class
MIAME-class	miame-class
multiassign	multiassign
normControls	miame-class
normControls,MIAME-method	miame-class
notes	exprSet-class
notes,exprSet-method	exprSet-class
notes<-	exprSet-class
notes<-,exprSet-method	exprSet-class
openPDF	openPDF
openVignette	openVignette
otherInfo	miame-class
otherInfo,MIAME-method	miame-class
package.version	package.version
pData	exprSet-class
pData,eSet-method	eSet-class
pData,exprSet-method	exprSet-class
pData,phenoData-method	phenoData-class
pData<-	exprSet-class
pData<-,eSet-method	eSet-class
pData<-,exprSet-method	exprSet-class
pData<-,phenoData-method	phenoData-class
phenoData	phenoData-class
phenoData,eSet-method	eSet-class
phenoData,exprSet-method	exprSet-class
phenoData-class	phenoData-class
phenoData<-	exprSet-class
phenoData<-,eSet,phenoData-method	eSet-class
phenoData<-,exprSet,phenoData-method	exprSet-class
phenoData<-,pheno	phenoData-class
preproc	miame-class
preproc,MIAME-method	miame-class
read.exprSet	read.exprSet
read.MIAME	read.MIAME
read.phenoData	read.phenoData
sampleNames	exprSet-class
sampleNames,exprSet-method	exprSet-class
sampleNames<-	exprSet-class
sampleNames<-,exprSet-method	exprSet-class
samples	miame-class
samples,MIAME-method	miame-class
se.exprs	exprSet-class
se.exprs,exprSet-method	exprSet-class
se.exprs<-	exprSet-class
se.exprs<-,exprSet-method	exprSet-class
show,container-method	container-class
show,eSet-method	eSet-class
show,exprList-method	eSet-class
show,exprListNM-method	eSet-class
show,exprSet-method	exprSet-class
show,MIAME-method	miame-class
show,phenoData-method	phenoData-class
split,exprSet,factor-method	exprSet-class
split,exprSet,vector-method	exprSet-class
split,phenoData,vector-method	phenoData-class
strbreak	strbreak
testBioCConnection	testBioCConnection
update2MIAME	exprSet-class
update2MIAME,exprSet-method	exprSet-class
varLabels	exprSet-class
varLabels,exprSet-method	exprSet-class
varLabels,phenoData-method	phenoData-class
varMetadata	phenoData-class
varMetadata,phenoData-method	phenoData-class
write.exprs	exprSet-class
write.exprs,exprSet-method	exprSet-class
[,container-method	container-class
[,eSet-method	eSet-class
[,exprSet-method	exprSet-class
[,phenoData-method	phenoData-class
[[,container-method	container-class
[[,exprSet-method	exprSet-class
[[,phenoData-method	phenoData-class
[[<-,container-method	container-class
[[<-,exprSet-method	exprSet-class
[[<-,phenoData-method	phenoData-class
