Package: epichains
Title: Simulating and Analysing Transmission Chain Statistics Using
        Branching Process Models
Version: 0.1.1
Authors@R: c(
    person("James M.", "Azam", , "james.azam@lshtm.ac.uk", role = c("aut", "cre", "cph"),
           comment = c(ORCID = "0000-0001-5782-7330")),
    person("Sebastian", "Funk", , "sebastian.funk@lshtm.ac.uk", role = c("aut", "cph"),
           comment = c(ORCID = "0000-0002-2842-3406")),
    person("Flavio", "Finger", , "flavio.finger@epicentre.msf.org", role = "aut",
           comment = c(ORCID = "0000-0002-8613-5170")),
    person("Zhian N.", "Kamvar", , "zkamvar@gmail.com", role = "ctb",
           comment = c(ORCID = "0000-0003-1458-7108")),
    person("Hugo", "Gruson", , "hugo@data.org", role = c("ctb", "rev"),
           comment = c(ORCID = "0000-0002-4094-1476")),
    person("Karim", "Mané", , "karim.mane@lshtm.ac.uk", role = "rev",
           comment = c(ORCID = "0000-0002-9892-2999")),
    person("Pratik", "Gupte", , "pratik.gupte@lshtm.ac.uk", role = "rev",
           comment = c(ORCID = "0000-0001-5294-7819")),
    person("Joshua W.", "Lambert", , "joshua.lambert@lshtm.ac.uk", role = "rev",
           comment = c(ORCID = "0000-0001-5218-3046"))
  )
Description: Provides methods to simulate and analyse the size and length
    of branching processes with an arbitrary offspring distribution. These
    can be used, for example, to analyse the distribution of chain sizes
    or length of infectious disease outbreaks, as discussed in Farrington
    et al. (2003) <doi:10.1093/biostatistics/4.2.279>.
License: MIT + file LICENSE
URL: https://github.com/epiverse-trace/epichains,
        https://epiverse-trace.github.io/epichains/
BugReports: https://github.com/epiverse-trace/epichains/issues
Depends: R (>= 3.6.0)
Imports: checkmate, stats, utils
Suggests: bookdown, dplyr, epicontacts, ggplot2, knitr, lubridate,
        rmarkdown, spelling, testthat, truncdist
VignetteBuilder: knitr
Config/Needs/website: epiverse-trace/epiversetheme
Config/testthat/edition: 3
Encoding: UTF-8
Language: en-GB
LazyData: true
RoxygenNote: 7.3.2.9000
NeedsCompilation: no
Packaged: 2024-10-09 11:53:58 UTC; lshja16
Author: James M. Azam [aut, cre, cph] (<https://orcid.org/0000-0001-5782-7330>),
  Sebastian Funk [aut, cph] (<https://orcid.org/0000-0002-2842-3406>),
  Flavio Finger [aut] (<https://orcid.org/0000-0002-8613-5170>),
  Zhian N. Kamvar [ctb] (<https://orcid.org/0000-0003-1458-7108>),
  Hugo Gruson [ctb, rev] (<https://orcid.org/0000-0002-4094-1476>),
  Karim Mané [rev] (<https://orcid.org/0000-0002-9892-2999>),
  Pratik Gupte [rev] (<https://orcid.org/0000-0001-5294-7819>),
  Joshua W. Lambert [rev] (<https://orcid.org/0000-0001-5218-3046>)
Maintainer: James M. Azam <james.azam@lshtm.ac.uk>
Repository: CRAN
Date/Publication: 2024-10-14 09:20:11 UTC
Built: R 4.6.0; ; 2026-04-25 14:01:50 UTC; windows
