# Data Visualisation on 'Lifemap' Tree

## Documentation for package ‘LifemapR’ version 1.1.6

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package README

## Help Pages

+.lifemap_obj | Add a graphical element to a tree visualisation.
add_lm_branches | Compute the aesthetics for a subtree visualisation.
add_lm_markers | Compute the aesthetics for markers visualisation.
add_lm_piecharts | Compute the aesthetics for discret values visualisation.
build_Lifemap | A function to construct a LifemapR object, usable by the other functions of the package.
create_matrix | Create a dataframe for the ancestry.
create_value_range | Compute a new scale for a value
display_map | Create a Lifemap base.
display_option | Compute the different display options.
draw_Lifemap | Represent data on a Lifemap basemap.
eukaryotes_1000 | NCBI information for 1000 eukaryotes
eukaryotes_80 | NCBI information for 80 eukaryotes
gen_res | Genomic results
is.lifemap_obj | Reports whether x is a lifemap_obj object.
is.lm_branches | Reports whether x is a lm_branches object.
is.lm_markers | Reports whether x is a lm_markers object.
is.lm_piecharts | Reports whether x is a lm_branches object.
kraken_res | Kraken results
lifemap | Initialise a new Lifemap visualisation.
lm_branches | Add a "branches" layer to a lifemap_obj object.
LM_eukaryotes | Transformation in a LifemapR format of NCBI information for 1000 eukaryotes
lm_markers | add a "markers" layer to a lifemap_obj object.
lm_piecharts | Add a "piecharts" layer to a lifemap_obj object.
make_newick | Create a newick for the given dataset.
pass_infos | Infer numerical values to nodes.
pass_infos_discret | Infer discret values to nodes for lm_piecharts function.
print.lifemap_obj | Method to print lifemap_obj objects.