# 'RStudio' Addins and 'Shiny' Modules for Medical Research

## Documentation for package ‘jsmodule’ version 2.0.1

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

aiAssistant | aiAssistant: AI Assistant module server
aiAssistantUI | aiAssistantUI: AI Assistant module UI
barServer | barServer: shiny module server for barplot.
barUI | barUI: shiny module UI for barplot
boxServer | boxServer: shiny module server for boxplot.
boxUI | boxUI: shiny module UI for boxplot
coxModule | coxModule: shiny modulde server for Cox's model.
coxUI | coxUI: shiny modulde UI for Cox's model.
csvFile | csvFile: Shiny module Server for file upload.
csvFileInput | csvFileInput: Shiny module UI for file upload.
FilePs | FilePs: Shiny module Server for propensity score analysis.
FilePsInput | FilePsInput: Shiny module UI for propensity score analysis.
FileRepeated | FileRepeated: Server for repeated measures analysis.
FileRepeatedInput | FileRepeatedInput: UI for repeated measures analysis.
FileSurvey | FileSurvey: Server for survey data analysis.
FileSurveyInput | FileSurveyInput: UI for survey data analysis.
forestcoxServer | forestcoxServer:shiny module server for forestcox
forestcoxUI | forestcoxUI:shiny module UI for forestcox
forestglmServer | forestglmServer:shiny module server for forestglm
forestglmUI | forestglmUI:Shiny module UI for forestglm
GEEModuleLinear | GEEModuleLinear: shiny modulde server for gaussian generalized estimating equation(GEE) using reactive data.
GEEModuleLogistic | GEEModuleLogistic: shiny modulde server for binomial gaussian generalized estimating equation(GEE) using reactive data.
GEEModuleUI | GEEModuleUI: shiny modulde UI for generalized estimating equation(GEE).
ggpairsModule | ggpairsModule: shiny module server for basic/scatter plot.
ggpairsModule2 | ggpairsModule2: shiny module server for basic/scatter plot for reactive data.
ggpairsModuleUI1 | ggpairsModuleUI1: Variable selection module UI for ggpairs
ggpairsModuleUI2 | ggpairsModuleUI2: Option & download module UI for ggpairs
ggplotdownUI | ggplotdownUI: Option & download module UI for ggplot
histogramServer | histogramServer: shiny module server for histogram.
histogramUI | histogramUI: shiny module UI for histogram
is_production_environment | Detect if running in production/deployment environment
jsBasicAddin | jsBasicAddin: Rstudio addin of jsBasicGadget
jsBasicExtAddin | jsBasicExtAddin: RStudio Addin for basic data analysis with external data.
jsBasicGadget | jsBasicGadget: Shiny Gadget of Basic Statistics in Medical Research.
jsPropensityAddin | jsPropensityAddin: Rstudio addin of jsPropensityGadget
jsPropensityExtAddin | jsPropensityExtAddin: RStudio Addin for propensity score analysis with external data.
jsPropensityGadget | jsPropensityGadget: Shiny Gadget for propensity score analysis.
jsRepeatedAddin | jsRepeatedAddin: Rstudio addin of jsRepeatedGadget
jsRepeatedExtAddin | jsRepeatedExtAddin: RStudio Addin for repeated measure analysis with external data.
jsRepeatedGadget | jsRepeatedGadget: Shiny Gadget of Repeated measure analysis.
jsSurveyAddin | jsSurveyAddin: Rstudio addin of jsSurveyGadget
jsSurveyExtAddin | jsSurveyExtAddin: RStudio Addin for survey data analysis with external data.
jsSurveyGadget | jsSurveyGadget: Shiny Gadget of survey data analysis.
kaplanModule | kaplanModule: shiny module server for kaplan-meier plot.
kaplanUI | kaplanUI: shiny module UI for kaplan-meier plot
lineServer | lineServer: shiny module server for lineplot.
lineUI | lineUI: shiny module UI for lineplot
logistic.display2 | logistic.display2: Modified epiDisplay's logistic.display function.
logisticModule2 | logisticModule2: Shiny modulde server for logistic regression for reactive data.
mk.lev2 | mk.lev2: level generating function
mklist | mklist: function to make variable list lncluding specific variables.
mksetdiff | mksetdiff: function to make variable list excluding specific variables.
optionUI | optionUI: Option UI with icon
reclassificationJS | reclassificationJS: Function for reclassification table and statistics
regress.display2 | regress.display2: modified epiDisplay's regress.display function
regressModule2 | regressModule2: Shiny modulde server for linear regression for reactive data.
regressModuleUI | regressModuleUI: shiny modulde UI for linear regression.
rocModule | rocModule: shiny module server for roc analysis
rocModule2 | rocModule2: shiny module server for roc analysis- input number of model as integer
rocUI | rocUI: shiny module UI for roc analysis
ROC_table | ROC_table: extract AUC, NRI and IDI information from list of roc object in pROC packages.
safe_eval_expr | Safe evaluation wrapper with environment-aware security
scatterServer | scatterServer: shiny module server for scatterplot.
scatterUI | scatterUI: shiny module UI for scatterplot
survIDINRI_helper | survIDINRI_helper: Helper function for IDI.INF.OUT in survIDINRI packages
tb1module | tb1module: table 1 shiny module server.
tb1module2 | tb1module2: table 1 shiny module server for reactive data.
tb1moduleUI | tb1moduleUI: table 1 module UI.
tb1simple | tb1simple: tb1 module server for propensity score analysis
tb1simple2 | tb1simple2: tb1 module for propensity score analysis for reactive data
tb1simpleUI | tb1simpleUI : tb1 module UI for propensity score analysis
templateGenerator | templateGenerator: Shiny Gadget for global/app.R template.
timeROChelper | timeROChelper: Helper function for timerocModule
timerocModule | timerocModule: shiny module server for time-dependent roc analysis
timerocModule2 | timerocModule: shiny module server for time-dependent roc analysis
timerocUI | timerocUI: shiny module UI for time-dependent roc analysis
timeROC_table | timeROC_table: extract AUC information from list of timeROChelper object.
use_jsmodule_style | Include jsmodule CSS styling