# Ridge Regression with Automatic Selection of the Penalty Parameter

## Documentation for package ‘ridge’ version 3.3

- DESCRIPTION file.

## Help Pages

ridge-package | ridge-package description
coef.ridgeLinear | Linear ridge regression.
coef.ridgeLogistic | Logistic ridge regression.
GenBin | Simulated genetic data with a binary phenotypes
GenBin_genotypes | Simulated genetic data with a binary phenotypes
GenBin_phenotypes | Simulated genetic data with a binary phenotypes
GenCont | Simulated genetic data with continuous outcomes
GenCont_genotypes | Simulated genetic data with continuous outcomes
GenCont_phenotypes | Simulated genetic data with continuous outcomes
Gorman | The Ten-Factor data first described by Gorman and Toman (1966).
Hald | Hald data
linearRidge | Linear ridge regression.
linearRidgeGenotypes | Fits linear ridge regression models for genome-wide SNP data.
linearRidgeGenotypesPredict | Predict phenotypes from genome-wide SNP data based on a file of coefficients
logisticRidge | Logistic ridge regression.
logisticRidgeGenotypes | Fits logistic ridge regression models for genomoe-wide SNP data.
logisticRidgeGenotypesPredict | Predict fitted probabilities from genome-wide SNP data based on a file of coefficients
nobs.ridgeLinear | Linear ridge regression.
plot.pvalsRidgeLinear | Compute p-values for ridgeLinear and ridgeLogistic models
plot.pvalsRidgeLogistic | Compute p-values for ridgeLinear and ridgeLogistic models
plot.ridgeLinear | Linear ridge regression.
plot.ridgeLogistic | Logistic ridge regression.
predict.ridgeLinear | Linear ridge regression.
predict.ridgeLogistic | Logistic ridge regression.
print.pvalsRidgeLinear | Compute p-values for ridgeLinear and ridgeLogistic models
print.pvalsRidgeLogistic | Compute p-values for ridgeLinear and ridgeLogistic models
print.ridgeLinear | Linear ridge regression.
print.ridgeLogistic | Logistic ridge regression.
print.summary.ridgeLinear | Linear ridge regression.
print.summary.ridgeLogistic | Logistic ridge regression.
pvals | Compute p-values for ridgeLinear and ridgeLogistic models
pvals.ridgeLinear | Compute p-values for ridgeLinear and ridgeLogistic models
pvals.ridgeLogistic | Compute p-values for ridgeLinear and ridgeLogistic models
ridge | ridge: Linear and logistic ridge regression functions.
summary.ridgeLinear | Linear ridge regression.
summary.ridgeLogistic | Logistic ridge regression.