# E-Value in the Omics Data Association Studies

## Documentation for package ‘metevalue’ version 0.2.4

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

demo_biseq_DMR | BiSeq Output Demo Dataset
demo_biseq_methyrate | BiSeq Methyrate Demo Dataset
demo_desq_out | DESeq Output Dataset
demo_DMRfinder_DMRs | DMRfinder Output Demo Dataset
demo_DMRfinder_rate_combine | DMRfinder Methyrate Demo Dataset
demo_methylkit_methyrate | Methyrate Dataset
demo_methylkit_met_all | Methyrate output dataset from methylKit
demo_metilene_input | Metilene Methyrate Demo Dataset
demo_metilene_out | Metilene Demo Output Dataset
evalue_buildin_sql | Build-in data process function
evalue_buildin_var_fmt_nm | Build-in check file format function Perform the format check and data clean for the "metilene" or "biseq", "DMRfinder" or "methylKit" method correspondingly.
metevalue.biseq | Calculate E-value of the BiSeq data format
metevalue.biseq.chk | Check the BiSeq data format
metevalue.DMRfinder | Calculate E-value of the DMRfinder data format
metevalue.DMRfinder.chk | Check the DMRfinder data format
metevalue.methylKit | Calculate E-value of the methylKit data format
metevalue.methylKit.chk | Check the methylKit data format
metevalue.metilene | Calculate E-value of the Metilene data format
metevalue.metilene.chk | Check the Metilene data format
metevalue.RNA_general | A general method to calculate the e-value for RNA-seq data.
varevalue.metilene | Calculate E-value of the Metilene data
varevalue.single_general | A general method to calculate the e-value for other DNA methylation tools not described above. The input data is the DNA methylation rates using the similar format with Metilene.