gap-package	gap-package
a2g	a2g
ab	ab
AE3	AE3
allDuplicated	gap-internal
allele.recode	allele.recode
asplot	asplot
b2r	b2r
BFDP	BFDP
bt	bt
ccsize	ccsize
chow.test	chow.test
chr_pos_a1_a2	chr_pos_a1_a2
ci	gap-internal
circos.cis.vs.trans.plot	circos.cis.vs.trans.plot
circos.cnvplot	circos.cnvplot
circos.mhtplot	circos.mhtplot
circos.mhtplot2	circos.mhtplot2
cis.vs.trans.classification	cis.vs.trans.classification
cnvplot	cnvplot
comp.score	comp.score
cov.invlogit	gap-internal
cs	cs
ESplot	ESplot
fbsize	fbsize
FPRP	FPRP
g2a	g2a
g2a.c	gap-internal
gap	gap-package
gc.control	gap-internal
gc.em	gc.em
gc.lambda	gc.lambda
gcode	gap-internal
gcontrol	gcontrol
gcontrol2	gcontrol2
gcp	gcp
genecounting	genecounting
geno.p	gap-internal
geno.recode	geno.recode
getb1star	gap-internal
getPTE	gap-internal
get_b_se	get_b_se
get_pve_se	get_pve_se
get_sdy	get_sdy
gif	gif
grec2g	gap-internal
grid2d	grid2d
h2.jags	h2.jags
h2G	h2G
h2GE	h2GE
h2l	h2l
h2_mzdz	h2_mzdz
hap	hap
hap.control	hap.control
hap.em	hap.em
hap.score	hap.score
hap.score.glm	gap-internal
hap.score.podds	gap-internal
HapDesign	gap-internal
HapFreqSE	gap-internal
hg18	gap-internal
hg19	gap-internal
hg38	gap-internal
hmht.control	hmht.control
htr	htr
hw	gap-internal
hwe	hwe
hwe.cc	hwe.cc
hwe.hardy	hwe.hardy
hwe.jags	hwe.jags
invlogit	gap-internal
invnormal	invnormal
inv_chr_pos_a1_a2	inv_chr_pos_a1_a2
is.miss	gap-internal
ixy	ixy
k	gap-internal
KCC	KCC
kin.morgan	kin.morgan
klem	klem
labelManhattan	labelManhattan
lambda1000	gap-internal
LD22	LD22
LDkl	LDkl
log10p	log10p
log10pvalue	log10pvalue
logit	gap-internal
logp	logp
m2plem	gap-internal
makeped	makeped
makeRLEplot	gap-internal
masize	masize
MCMCgrm	MCMCgrm
METAL_forestplot	METAL_forestplot
metap	metap
metareg	metareg
mht.control	mht.control
mhtplot	mhtplot
mhtplot.trunc	mhtplot.trunc
mhtplot2	mhtplot2
mia	mia
miamiplot	miamiplot
miamiplot2	miamiplot2
micombine	gap-internal
mr	mr
mr.boot	gap-internal
mr_forestplot	mr_forestplot
mtdt	mtdt
mtdt2	mtdt2
muvar	muvar
mvmeta	mvmeta
PARn	SNP
pbsize	pbsize
pbsize2	pbsize2
pedtodot	pedtodot
pedtodot_verbatim	pedtodot_verbatim
pfc	pfc
pfc.sim	pfc.sim
pgc	pgc
plem2m	gap-internal
plot.hap.score	plot.hap.score
print.hap.score	print.hap.score
pvalue	pvalue
qqfun	qqfun
qqunif	qqunif
qtl2dplot	qtl2dplot
qtl2dplotly	qtl2dplotly
qtl3dplotly	qtl3dplotly
qtlClassifier	qtlClassifier
read.ms.output	read.ms.output
ReadGRM	ReadGRM
ReadGRMBin	ReadGRMBin
ReadGRMPCA	gap-internal
ReadGRMPLINK	gap-internal
revhap	gap-internal
revhap.i	gap-internal
revStrand	revStrand
runshinygap	runshinygap
s2k	s2k
se.exp	gap-internal
se.invlogit	gap-internal
sentinels	sentinels
snp.ES	SNP
snp.HWE	SNP
snp.PAR	SNP
snptest_sample	snptest_sample
solve_skol	gap-internal
sun3d	gap-internal
textbox	gap-internal
toETDT	gap-internal
tscc	tscc
ungcode	gap-internal
VR	gap-internal
weighted.median	gap-internal
whscore	whscore
WriteGRM	WriteGRM
WriteGRMBin	WriteGRMBin
WriteGRMSAS	gap-internal
x2	gap-internal
xy	xy
z	gap-internal
