nat-package	nat-package
*.dotprops	dotprops-arithmetic
*.neuron	neuron-arithmetic
*.neuronlist	neuronlist-arithmetic
+.dotprops	dotprops-arithmetic
+.neuron	neuron-arithmetic
+.neuronlist	neuronlist-arithmetic
-.dotprops	dotprops-arithmetic
-.neuron	neuron-arithmetic
-.neuronlist	neuronlist-arithmetic
/.dotprops	dotprops-arithmetic
/.neuron	neuron-arithmetic
/.neuronlist	neuronlist-arithmetic
affmat2cmtkparams	affmat2cmtkparams
all.equal.dotprops	all.equal.dotprops
all.equal.im3d	all.equal.im3d
all.equal.neuron	all.equal.neuron
amiratype	amiratype
as.cmtkreg	cmtkreg
as.cmtkreg.default	cmtkreg
as.cmtkreg.matrix	cmtkreg
as.cmtkreg.reglist	cmtkreg
as.data.frame.neuronlist	get-set-neuronlist-data.frame
as.dotprops	dotprops
as.hxsurf	as.hxsurf
as.hxsurf.mesh3d	as.hxsurf
as.im3d	as.im3d
as.im3d.im3d	as.im3d
as.im3d.matrix	as.im3d
as.mesh3d	as.mesh3d
as.mesh3d.ashape3d	as.mesh3d
as.mesh3d.hxsurf	as.mesh3d
as.neuron	neuron
as.neuron.data.frame	neuron
as.neuron.default	neuron
as.neuron.igraph	neuron
as.neuron.ngraph	neuron
as.neuronlist	as.neuronlist
as.neuronlist.default	as.neuronlist
as.neuronlist.neuronlistfh	as.neuronlist.neuronlistfh
as.neuronlistfh	neuronlistfh
as.neuronlistfh.neuronlist	neuronlistfh
as.ngraph	ngraph
as.ngraph.data.frame	ngraph
as.ngraph.neuron	ngraph
as.seglist	seglist
as.seglist.igraph	seglist
as.seglist.neuron	seglist
boundingbox	boundingbox
boundingbox.character	boundingbox
boundingbox.default	boundingbox
boundingbox.im3d	boundingbox
boundingbox.list	boundingbox
boundingbox.neuron	boundingbox
boundingbox.shape3d	boundingbox
boundingbox<-	boundingbox
branchpoints	rootpoints
branchpoints.default	rootpoints
branchpoints.igraph	rootpoints
branchpoints.neuron	rootpoints
c.neuronlist	c.neuronlist
c.reglist	reglist
Cell07PNs	Cell07PNs
clampmax	clampmax
cmtk	cmtk.bindir
cmtk.bindir	cmtk.bindir
cmtk.call	cmtk.call
cmtk.dof2mat	cmtk.dof2mat
cmtk.extract_affine	cmtk.extract_affine
cmtk.mat2dof	cmtk.mat2dof
cmtk.reformatx	cmtk.reformatx
cmtk.statistics	cmtk.statistics
cmtk.system2	cmtk.call
cmtk.targetvolume	cmtk.targetvolume
cmtk.targetvolume.default	cmtk.targetvolume
cmtk.targetvolume.im3d	cmtk.targetvolume
cmtk.targetvolume.list	cmtk.targetvolume
cmtk.version	cmtk.version
cmtkparams2affmat	cmtkparams2affmat
cmtkreg	cmtkreg
cmtkreglist	cmtkreglist
coord2ind	coord2ind
coord2ind.default	coord2ind
data.frame<-	get-set-neuronlist-data.frame
data.frame<-.neuronlist	get-set-neuronlist-data.frame
dotprops	dotprops
dotprops.character	dotprops
dotprops.default	dotprops
dotprops.dotprops	dotprops
dotprops.im3d	dotprops
dotprops.neuron	dotprops
dotprops.neuronlist	dotprops
droplevels	neuronlist-dataframe-methods
droplevels.neuronlist	neuronlist-dataframe-methods
endpoints	rootpoints
endpoints.default	rootpoints
endpoints.igraph	rootpoints
endpoints.neuron	rootpoints
fileformats	fileformats
find.neuron	find.neuron
find.soma	find.soma
flip	flip
flip.array	flip
getformatreader	fileformats
getformatwriter	fileformats
graph.nodes	graph.nodes
head	neuronlist-dataframe-methods
head.neuronlist	neuronlist-dataframe-methods
hxsurf	read.hxsurf
ijkpos	im3d-coords
im3d	im3d
im3d-coords	im3d-coords
im3d-io	im3d-io
image.im3d	image.im3d
imexpand.grid	imexpand.grid
imscalebar	imscalebar
imslice	imslice
ind2coord	ind2coord
ind2coord.array	ind2coord
ind2coord.default	ind2coord
ind2coord.im3d	ind2coord
intersect	intersect
intersect.default	intersect
intersect.neuronlist	intersect
invert_reglist	reglist
is.amiramesh	is.amiramesh
is.cmtkreg	cmtkreg
is.dotprops	dotprops
is.fijitraces	is.fijitraces
is.im3d	is.im3d
is.neuroml	is.neuroml
is.neuron	neuron
is.neuronlist	is.neuronlist
is.neuronlistfh	neuronlistfh
is.nrrd	is.nrrd
is.swc	is.swc
is.vaa3draw	is.vaa3draw
kcs20	kcs20
mask	mask
mask.im3d	mask
materials	materials
materials.character	materials
materials.default	materials
materials.hxsurf	materials
MBL.surf	MBL.surf
mirror	mirror
mirror.character	mirror
mirror.default	mirror
mirror.neuronlist	mirror
nat	nat-package
ndigest	ndigest
ndigest.dotprops	ndigest
ndigest.neuron	ndigest
ndigest.neuronlistfh	ndigest
neuron	neuron
neuronlist	neuronlist
neuronlist-dataframe-methods	neuronlist-dataframe-methods
neuronlistfh	neuronlistfh
ngraph	ngraph
nlapply	nlapply
nlscan	nlscan
nmapply	nlapply
nopen3d	nopen3d
normalise_swc	normalise_swc
npop3d	npop3d
nrrd.voxdims	nrrd.voxdims
nvertices	nvertices
nvertices.default	nvertices
nvertices.neuronlist	nvertices
nview3d	nview3d
origin	origin
pan3d	pan3d
plot.neuron	plot.neuron
plot.neuronlist	plot.neuronlist
plot3d	plot3d
plot3d.boundingbox	plot3d.boundingbox
plot3d.character	plot3d.neuronlist
plot3d.cmtkreg	plot3d.cmtkreg
plot3d.dotprops	plot3d.dotprops
plot3d.hxsurf	plot3d.hxsurf
plot3d.neuron	plot3d.neuron
plot3d.neuronlist	plot3d.neuronlist
pointsinside	pointsinside
pointsinside.default	pointsinside
potential_synapses	potential_synapses
potential_synapses.dotprops	potential_synapses
potential_synapses.neuron	potential_synapses
potential_synapses.neuronlist	potential_synapses
projection	projection
prune	prune
prune.default	prune
prune.dotprops	prune
prune.neuron	prune
prune.neuronlist	prune
prune_edges	prune_vertices
prune_strahler	prune_strahler
prune_vertices	prune_vertices
read.amiramesh	amiramesh-io
read.amiramesh.header	amiramesh-io
read.cmtk	read.cmtk
read.cmtkreg	read.cmtkreg
read.hxsurf	read.hxsurf
read.im3d	im3d-io
read.landmarks	read.landmarks
read.morphml	read.morphml
read.neuron	read.neuron
read.neuron.fiji	read.neuron.fiji
read.neuron.neuroml	read.neuron.neuroml
read.neuron.swc	read.neuron.swc
read.neuronlistfh	read.neuronlistfh
read.neurons	read.neurons
read.ngraph.swc	read.neuron.swc
read.nrrd	read.nrrd
read.nrrd.header	read.nrrd
read.vaa3draw	read.vaa3draw
registerformat	fileformats
reglist	reglist
remotesync	remotesync
remotesync.neuronlistfh	remotesync
resample	resample
resample.neuron	resample
rootpoints	rootpoints
rootpoints.default	rootpoints
rootpoints.igraph	rootpoints
rootpoints.neuron	rootpoints
scale	scale.neuron
scale.dotprops	scale.neuron
scale.neuron	scale.neuron
seglengths	seglengths
seglist	seglist
seglist2swc	seglist2swc
segmentgraph	segmentgraph
setdiff	setdiff
setdiff.default	setdiff
setdiff.neuronlist	setdiff
simplify_reglist	simplify_reglist
smooth_neuron	smooth_neuron
smooth_segment_gauss	smooth_neuron
spine	spine
strahler_order	strahler_order
sub2ind	sub2ind
subset	subset
subset.dotprops	subset.dotprops
subset.hxsurf	subset.hxsurf
subset.neuron	subset.neuron
subset.neuronlist	subset.neuronlist
summary	summary.neuron
summary.dotprops	summary.neuron
summary.neuron	summary.neuron
summary.neuronlist	summary.neuron
tail	neuronlist-dataframe-methods
tail.neuronlist	neuronlist-dataframe-methods
threshold	threshold
threshold.im3d	threshold
union	union
union.default	union
union.neuronlist	union
unmask	unmask
voxdims	voxdims
voxdims.character	voxdims
voxdims.default	voxdims
voxdims.im3d	voxdims
with	neuronlist-dataframe-methods
with.neuronlist	neuronlist-dataframe-methods
write.amiramesh	write.amiramesh
write.cmtk	write.cmtk
write.cmtkreg	write.cmtkreg
write.hxsurf	write.hxsurf
write.im3d	im3d-io
write.landmarks	read.landmarks
write.neuron	write.neuron
write.neuronlistfh	write.neuronlistfh
write.neurons	write.neurons
write.nrrd	write.nrrd
write.nrrd.header	write.nrrd
write.nrrd.header.for.file	write.nrrd
write.vtk	write.vtk
write.vtk.neuron	write.vtk
xform	xform
xform.character	xform
xform.data.frame	xform
xform.default	xform
xform.dotprops	xform
xform.list	xform
xform.neuron	xform
xform.neuronlist	xform
xform.shape3d	xform
xformimage	xformimage
xformimage.character	xformimage
xformimage.cmtkreg	xformimage
xformimage.default	xformimage
xformimage.reglist	xformimage
xformpoints	xformpoints
xformpoints.character	xformpoints
xformpoints.cmtkreg	xformpoints
xformpoints.default	xformpoints
xformpoints.reglist	xformpoints
xyzmatrix	xyzmatrix
xyzmatrix.default	xyzmatrix
xyzmatrix.dotprops	xyzmatrix
xyzmatrix.hxsurf	xyzmatrix
xyzmatrix.igraph	xyzmatrix
xyzmatrix.mesh3d	xyzmatrix
xyzmatrix.neuron	xyzmatrix
xyzmatrix.neuronlist	xyzmatrix
xyzmatrix<-	xyzmatrix
xyzmatrix<-.dotprops	xyzmatrix
xyzmatrix<-.hxsurf	xyzmatrix
xyzmatrix<-.igraph	xyzmatrix
xyzmatrix<-.neuron	xyzmatrix
xyzmatrix<-.neuronlist	xyzmatrix
xyzmatrix<-.shape3d	xyzmatrix
xyzpos	im3d-coords
[.neuronlist	neuronlist-dataframe-methods
[.neuronlistfh	sub-.neuronlistfh
[<-.neuronlist	neuronlist-dataframe-methods
