Package: snpsettest
Title: A Set-Based Association Test using GWAS Summary Statistics
Version: 0.1.1
Authors@R: c(
    person(given = "Jaehyun",
           family = "Joo",
           role = c("aut", "cre"),
           email = "jaehyunjoo@outlook.com"),
    person(given = "Blanca",
           family = "Himes",
           role = c("aut"),
           email = "bhimes@pennmedicine.upenn.edu"))
Description: The goal of 'snpsettest' is to provide simple tools that perform
             set-based association tests (e.g., gene-based association tests)
             using GWAS (genome-wide association study) summary statistics. A
             set-based association test in this package is based on the
             statistical model described in VEGAS (versatile gene-based
             association study), which combines the effects of a set of SNPs
             accounting for linkage disequilibrium between markers. This package
             uses a different approach from the original VEGAS implementation to
             compute set-level p values more efficiently, as described in
             <https://github.com/HimesGroup/snpsettest/wiki/Statistical-test-in-snpsettest>.
License: GPL (>= 3)
Depends: R (>= 3.1.0)
Imports: gaston, data.table, Rcpp
Suggests: tidyr, knitr, rmarkdown
VignetteBuilder: knitr
LinkingTo: Rcpp, RcppArmadillo
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.2
URL: https://github.com/HimesGroup/snpsettest
BugReports: https://github.com/HimesGroup/snpsettest/issues
NeedsCompilation: yes
Packaged: 2022-01-18 02:59:51 UTC; jaehyun
Author: Jaehyun Joo [aut, cre],
  Blanca Himes [aut]
Maintainer: Jaehyun Joo <jaehyunjoo@outlook.com>
Repository: CRAN
Date/Publication: 2022-01-18 03:40:02 UTC
Built: R 4.0.5; x86_64-apple-darwin17.0; 2022-01-25 01:44:03 UTC; unix
Archs: snpsettest.so.dSYM
