Package: samc
Type: Package
Title: Spatial Absorbing Markov Chains
Version: 2.0.0
Authors@R: c(
    person("Andrew", "Marx", , "andrewjmarx@ufl.edu", role = c("aut", "cre", "cph"), 
      comment = c(ORCID = "0000-0002-7456-1631")
    ),
    person("Robert", "Fletcher", , , role = c("ctb"),
      comment = c(ORCID = "0000-0003-1717-5707")
    ),
    person("Miguel", "Acevedo", , , role = c("ctb"),
      comment = c(ORCID = "0000-0002-8289-1497")
    ),
    person("Jorge", "Sefair", , , role = c("ctb"),
      comment = c(ORCID = "0000-0002-5887-8938")
    ),
    person("Chao", "Wang", , , role = c("ctb"),
      comment = c(ORCID = "0000-0003-2706-5122")
    )
    )
Description: Implements functions for working with absorbing Markov chains. The
    implementation is based on the framework described in "Toward a unified
    framework for connectivity that disentangles movement and mortality in space
    and time" by Fletcher et al. (2019) <doi:10.1111/ele.13333>, which applies
    them to spatial ecology. This framework incorporates both resistance and 
    absorption with spatial absorbing Markov chains (SAMC) to provide several
    short-term and long-term predictions for metrics related to connectivity in 
    landscapes. Despite the ecological context of the framework, this package
    can be used in any application of absorbing Markov chains.
License: GPL (>= 3)
URL: https://andrewmarx.github.io/samc/
BugReports: https://github.com/andrewmarx/samc/issues/
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.6.0)
Imports: methods, gdistance, Matrix, raster
RoxygenNote: 7.1.1
Suggests: knitr, rmarkdown, testthat, viridisLite
VignetteBuilder: knitr
Collate: 'RcppExports.R' 'location-class.R' 'internal-classes.R'
        'samc-class.R' 'absorption.R' 'check.R' 'cond_passage.R'
        'data.R' 'visitation.R' 'dispersal.R' 'distribution.R'
        'generics.R' 'internal-functions.R' 'locate.R' 'map.R'
        'mortality.R' 'pairwise.R' 'samc.R' 'survival.R' 'zzz.R'
LinkingTo: Rcpp (>= 1.0.5), RcppEigen (>= 0.3.3.9.1), RcppThread (>=
        1.0.0)
NeedsCompilation: yes
Packaged: 2021-10-22 22:07:42 UTC; andrewjmarx
Author: Andrew Marx [aut, cre, cph] (<https://orcid.org/0000-0002-7456-1631>),
  Robert Fletcher [ctb] (<https://orcid.org/0000-0003-1717-5707>),
  Miguel Acevedo [ctb] (<https://orcid.org/0000-0002-8289-1497>),
  Jorge Sefair [ctb] (<https://orcid.org/0000-0002-5887-8938>),
  Chao Wang [ctb] (<https://orcid.org/0000-0003-2706-5122>)
Maintainer: Andrew Marx <andrewjmarx@ufl.edu>
Repository: CRAN
Date/Publication: 2021-10-23 04:20:02 UTC
Built: R 4.0.2; x86_64-apple-darwin17.0; 2021-10-23 10:57:33 UTC; unix
Archs: samc.so.dSYM
