# Intensive Care Unit Data with R

## Documentation for package ‘ricu’ version 0.5.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

A B C D E F G H I L M N P Q R S T U V W

## -- A --

aggregate.id_tbl | ICU class data utilities
anyDuplicated.id_tbl | ICU class data utilities
apply_map | Item callback utilities
as.data.frame.id_tbl | Tabular ICU data classes
as.data.table.id_tbl | Tabular ICU data classes
as_concept | Data Concepts
as_id_tbl | Tabular ICU data classes
as_item | Data items
as_ts_tbl | Tabular ICU data classes
as_win_tbl | Tabular ICU data classes
attach_src | Data attach utilities
attach_src.character | Data attach utilities
attach_src.src_cfg | Data attach utilities
aumc | ICU datasets
auto_attach_srcs | File system utilities
avpu | Concept callback functions

## -- B --

binary_op | Item callback utilities
bmi | Concept callback functions

## -- C --

change_dur_unit | ICU class data utilities
change_id | Switch between id types
change_interval | ICU class data utilities
collapse | Time series utility functions
comp_na | Item callback utilities
concept | Data Concepts
concept_availability | Load concept dictionaries
config_paths | File system utilities
convert_unit | Item callback utilities

## -- D --

data | ICU datasets
data_col | ICU class meta data utilities
data_dir | File system utilities
data_var | ICU class meta data utilities
data_vars | ICU class meta data utilities
days | Utilities for 'difftime'
delta_cummin | Sepsis 3 label
delta_min | Sepsis 3 label
delta_start | Sepsis 3 label
detach_src | Data attach utilities
downgrade_id | Switch between id types
downgrade_id.id_tbl | Switch between id types
downgrade_id.ts_tbl | Switch between id types
download_src | Data download utilities
download_src.aumc_cfg | Data download utilities
download_src.character | Data download utilities
download_src.src_cfg | Data download utilities
dt_gforce | ICU class data utilities
duplicated.id_tbl | ICU class data utilities
dur_col | ICU class meta data utilities
dur_unit | ICU class meta data utilities
dur_var | ICU class meta data utilities

## -- E --

eicu | ICU datasets
eicu_demo | ICU datasets
expand | Time series utility functions
explain_dictionary | Load concept dictionaries

## -- F --

fill_gaps | Time series utility functions
first_elem | Utility functions
fmt_msg | Message signaling nested with progress reporting

## -- G --

gcs | Concept callback functions
get_config | File system utilities

## -- H --

has_gaps | Time series utility functions
has_no_gaps | Time series utility functions
hirid | ICU datasets
hop | Time series utility functions
hours | Utilities for 'difftime'

## -- I --

id_col | ICU class meta data utilities
id_tbl | Tabular ICU data classes
id_var | ICU class meta data utilities
id_vars | ICU class meta data utilities
import_src | Data import utilities
import_src.aumc_cfg | Data import utilities
import_src.character | Data import utilities
import_src.src_cfg | Data import utilities
import_tbl | Data import utilities
import_tbl.tbl_cfg | Data import utilities
index_col | ICU class meta data utilities
index_var | ICU class meta data utilities
init_cncpt | Data Concepts
init_cncpt.cncpt | Data Concepts
init_cncpt.fct_cncpt | Data Concepts
init_cncpt.num_cncpt | Data Concepts
init_cncpt.rec_cncpt | Data Concepts
init_cncpt.unt_cncpt | Data Concepts
init_itm | Data items
init_itm.col_itm | Data items
init_itm.fun_itm | Data items
init_itm.hrd_itm | Data items
init_itm.itm | Data items
init_itm.rgx_itm | Data items
init_itm.sel_itm | Data items
interval | ICU class meta data utilities
is_cncpt | Data Concepts
is_concept | Data Concepts
is_false | Utility functions
is_id_tbl | Tabular ICU data classes
is_item | Data items
is_itm | Data items
is_regular | Time series utility functions
is_sorted | ICU class data utilities
is_true | Utility functions
is_ts_tbl | Tabular ICU data classes
is_unique | ICU class data utilities
is_val | Utility functions
is_win_tbl | Tabular ICU data classes
item | Data items

## -- L --

last_elem | Utility functions
load_concepts | Load concept data
load_concepts.character | Load concept data
load_concepts.cncpt | Load concept data
load_concepts.concept | Load concept data
load_concepts.fct_cncpt | Load concept data
load_concepts.item | Load concept data
load_concepts.itm | Load concept data
load_concepts.lgl_cncpt | Load concept data
load_concepts.num_cncpt | Load concept data
load_concepts.rec_cncpt | Load concept data
load_concepts.unt_cncpt | Load concept data
load_dictionary | Load concept dictionaries
load_difftime | Low level functions for loading data
load_difftime.aumc_tbl | Low level functions for loading data
load_difftime.character | Low level functions for loading data
load_difftime.eicu_tbl | Low level functions for loading data
load_difftime.hirid_tbl | Low level functions for loading data
load_difftime.miiv_tbl | Low level functions for loading data
load_difftime.mimic_tbl | Low level functions for loading data
load_id | Load data as 'id_tbl' or 'ts_tbl' objects
load_id.character | Load data as 'id_tbl' or 'ts_tbl' objects
load_id.default | Load data as 'id_tbl' or 'ts_tbl' objects
load_id.fun_itm | Load data as 'id_tbl' or 'ts_tbl' objects
load_id.itm | Load data as 'id_tbl' or 'ts_tbl' objects
load_id.src_tbl | Load data as 'id_tbl' or 'ts_tbl' objects
load_src | Low level functions for loading data
load_src.character | Low level functions for loading data
load_src.src_tbl | Low level functions for loading data
load_src_cfg | Load configuration for a data source
load_ts | Load data as 'id_tbl' or 'ts_tbl' objects
load_ts.character | Load data as 'id_tbl' or 'ts_tbl' objects
load_ts.default | Load data as 'id_tbl' or 'ts_tbl' objects
load_ts.fun_itm | Load data as 'id_tbl' or 'ts_tbl' objects
load_ts.itm | Load data as 'id_tbl' or 'ts_tbl' objects
load_ts.src_tbl | Load data as 'id_tbl' or 'ts_tbl' objects
load_win | Load data as 'id_tbl' or 'ts_tbl' objects
load_win.character | Load data as 'id_tbl' or 'ts_tbl' objects
load_win.default | Load data as 'id_tbl' or 'ts_tbl' objects
load_win.fun_itm | Load data as 'id_tbl' or 'ts_tbl' objects
load_win.itm | Load data as 'id_tbl' or 'ts_tbl' objects
load_win.src_tbl | Load data as 'id_tbl' or 'ts_tbl' objects

## -- M --

max_or_na | Utility functions
meta_vars | ICU class meta data utilities
mews_score | SIRS score label
miiv | ICU datasets
mimic | ICU datasets
mimic_demo | ICU datasets
mins | Utilities for 'difftime'
min_or_na | Utility functions
msg_progress | Message signaling nested with progress reporting

## -- N --

news_score | SIRS score label
new_cncpt | Data Concepts
new_concept | Data Concepts
new_item | Data items
new_itm | Data items
norepi_equiv | Concept callback functions
not_val | Utility functions

## -- P --

pafi | Concept callback functions

## -- Q --

qsofa_score | SIRS score label

## -- R --

read_psv | Read and write utilities
remove_gaps | Time series utility functions
rename_cols | ICU class data utilities
replace_na | ICU class data utilities
rm_cols | ICU class data utilities
rm_na | ICU class data utilities

## -- S --

safi | Concept callback functions
secs | Utilities for 'difftime'
sep3 | Sepsis 3 label
setup_src_data | Data setup
setup_src_env | Data attach utilities
setup_src_env.src_cfg | Data attach utilities
set_config | File system utilities
set_val | Item callback utilities
sirs_score | SIRS score label
slide | Time series utility functions
slide_index | Time series utility functions
sofa_cardio | SOFA score label
sofa_cns | SOFA score label
sofa_coag | SOFA score label
sofa_liver | SOFA score label
sofa_renal | SOFA score label
sofa_resp | SOFA score label
sofa_score | SOFA score label
sort.id_tbl | ICU class data utilities
src_data_dir | File system utilities
stay_windows | Stays
stay_windows.character | Stays
stay_windows.default | Stays
stay_windows.list | Stays
stay_windows.src_env | Stays
supp_o2 | Concept callback functions
susp_inf | Suspicion of infection label

## -- T --

time_step | ICU class meta data utilities
time_unit | ICU class meta data utilities
time_vars | ICU class meta data utilities
transform_fun | Item callback utilities
ts_tbl | Tabular ICU data classes

## -- U --

unique.id_tbl | ICU class data utilities
upgrade_id | Switch between id types
upgrade_id.id_tbl | Switch between id types
upgrade_id.ts_tbl | Switch between id types
urine24 | Concept callback functions

## -- V --

validate_tbl | Tabular ICU data classes
vaso60 | Concept callback functions
vaso_ind | Concept callback functions
vent_ind | Concept callback functions

## -- W --

weeks | Utilities for 'difftime'
win_tbl | Tabular ICU data classes
write_psv | Read and write utilities