perfectphyloR-package	perfectphyloR-package
assoTest	assoTest
buildDend	buildDend
checkCompatible	checkCompatible
createHapMat	createHapMat
dCor	dCor
dCorTest	dCorTest
dendToNewick	dendToNewick
distMatRcpp	distMatRcpp
extractHaplos	extractHaplos
ex_hapMatSmall_data	ex_hapMatSmall_data
ex_hapMat_data	ex_hapMat_data
findSNVs	findSNVs
fourGamete	fourGamete
getNextFromFocal	getNextFromFocal
getNextLeftFocal	getNextLeftFocal
getNextRightFocal	getNextRightFocal
getnSNVs	getnSNVs
HHGtest	HHGtest
makeDend	makeDend
makeNewickRec	makeNewickRec
makePartition	makePartition
mantelStat	mantelStat
MantelTest	MantelTest
newNode	newNode
noVariation	noVariation
orderColsAncestry	orderColsAncestry
orderSNVs	orderSNVs
perfectphyloR	perfectphyloR-package
performTest	performTest
phenoDist	phenoDist
plotDend	plotDend
RandIndex	RandIndex
RandIndexTest	RandIndexTest
rdistMatrix	rdistMatrix
reconstructPP	reconstructPP
reconstructPPregion	reconstructPPregion
RVcoeff	RVcoeff
RVtest	RVtest
selectWindow	selectWindow
splitTips	splitTips
subsetHapMat	subsetHapMat
tdend	tdend
testAssoDist	testAssoDist
testDendAssoRI	testDendAssoRI
vcftohapMat	vcftohapMat
