# An R Shiny Application for Biological Dosimetry

## Documentation for package ‘biodosetools’ version 3.6.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

AIC_from_data | Calculate AIC (Akaike's 'An Information Criterion')
biodosetools | 'biodosetools' package
calculate_aberr | Aberration calculation functions
calculate_aberr_disp_index | Aberration calculation functions
calculate_aberr_mean | Aberration calculation functions
calculate_aberr_power | Aberration calculation functions
calculate_aberr_table | Calculate aberrations table
calculate_aberr_u_value | Aberration calculation functions
calculate_aberr_var | Aberration calculation functions
calculate_decision_threshold | Calculate decision thresholds
calculate_genome_factor | Calculate genomic conversion factor
calculate_model_stats | Calculate model statistics
calculate_trans_rate_manual | Calculate manual translocation rate
calculate_trans_rate_sigurdson | Calculate Sigurdson's translocation rate
calculate_yield | Calculate yield from dose
calculate_yield_infimum | Calculate theoretical yield infimum
correct_boundary | Correct boundary of irradiated fractions to be bounded by 0 and 1
correct_conf_int | Correct yield confidence interval
correct_negative_vals | Correct negative values
correct_yield | Correct yields if they are below the curve
dna_content_fractions_ihgsc | DNA Content Fractions of Human Chromosomes (IHGSC)
dna_content_fractions_morton | DNA Content Fractions of Human Chromosomes (Morton 1991)
estimate_hetero_mixed_poisson | Heterogeneous dose estimation (Mixed Poisson model)
estimate_partial_body_dolphin | Partial-body dose estimation (Dolphin's method)
estimate_whole_body_delta | Whole-body dose estimation (delta method)
estimate_whole_body_merkle | Whole-body dose estimation (Merkle's method)
fit | Perform dose-effect fitting algorithm
fit_glm_method | Perform GLM (Generalised Linear Model) fitting
fit_maxlik_method | Perform max-likelihood optimization fitting
gardner_confidence_table | Gardner's Confidence Intervals Table
get_deltamethod_std_err | Get standard errors using delta method
include_help | Include Markdown help
init_aberr_table | Aberration calculation functions
load_rmd_report | Load RMarkdown report
plot_estimated_dose_curve | Plot dose estimation curve
plot_fit_dose_curve | Plot fit dose curve
prepare_maxlik_count_data | Prepare count data for max-likelihood optimization fitting
project_yield | Project yield into dose-effect fitting curve
protracted_g_function | Calculate protracted function G(x)
run_app | Run the Shiny Application
R_factor | Calculate R regression confidence factor
yield_error_fun | Calculate yield error
yield_fun | Calculate yield