# A Bayesian No-Effect- Concentration (NEC) Algorithm

## Documentation for package ‘bayesnec’ version 2.0.2.3

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

bayesnec-package | The 'bayesnec' package.
+.bnecfit | "Add" multiple 'bnecfit' objects into one single 'bayesmanecfit' object containing Bayesian model averaging statistics.
amend | Amends an existing 'bayesmanecfit' object, for example, by adding or removing fitted models.
autoplot.bayesmanecfit | autoplot.bayesmanecfit
autoplot.bayesnecfit | autoplot.bayesnecfit
average_endpoints | average_endpoints
bayesmanecfit | Class 'bayesmanecfit' of models fitted with the 'brms' package
bayesmanecfit-class | Class 'bayesmanecfit' of models fitted with the 'brms' package
bayesnec | The 'bayesnec' package.
bayesnecfit | Class 'bayesnecfit' of models fitted with the 'brms' package
bayesnecfit-class | Class 'bayesnecfit' of models fitted with the 'brms' package
bayesnecformula | Set up a model formula for use in 'bayesnec'
beta_binomial2 | Custom beta-binomial family
beta_binomial2_lpmf | beta_binomial2_lpmf
beta_binomial2_rng | beta_binomial2_rng
bnec | bnec
bnecfit | Class 'bnecfit' of models fitted with function 'bnec'
bnecfit-class | Class 'bnecfit' of models fitted with function 'bnec'
bnf | Set up a model formula for use in 'bayesnec'
c.bnecfit | Concatenate multiple 'bnecfit' objects into one single 'bayesmanecfit' object containing Bayesian model averaging statistics.
check_chains | check_chains
check_chains.bayesmanecfit | check_chains.bayesmanecfit
check_chains.bayesnecfit | check_chains.bayesnecfit
check_chains.default | check_chains.default
check_formula | Check if input model formula is appropriate to use with 'bayesnec'
check_priors | Plots the prior and posterior parameter probability densities from an object of class 'bayesnecfit' or 'bayesmanecfit'.
compare_endpoints | compare_endpoints
compare_fitted | compare_fitted
compare_posterior | compare_posterior
dispersion | Posterior dispersion
ecx | Extracts the predicted ECx value as desired from an object of class 'bayesnecfit' or 'bayesnecfit'.
expand_manec | Extracts a range of statistics from a list of 'prebayesnecfit' objects.
expand_nec | Extracts a range of statistics from a 'prebayesnecfit' object.
formula.bayesmanecfit | formula.bayesmanecfit
formula.bayesnecfit | formula.bayesnecfit
ggbnec_data | Creates the data.frame for plotting with 'autoplot'.
herbicide | Herbicide phytotoxicity data
is_manecsummary | Checks if argument is a 'manecsummary' object
is_necsummary | Checks if argument is a 'necsummary' object
log_lik_beta_binomial2 | log_lik_beta_binomial2
make_brmsformula | Expose the final 'brmsformula'
manecsummary | Class 'manecsummary' of models fitted with the 'brms' package
manecsummary-class | Class 'manecsummary' of models fitted with the 'brms' package
manec_example | Example bayesmanecfit object
model.frame.bayesmanecfit | model.frame.bayesmanecfit
model.frame.bayesnecfit | model.frame.bayesnecfit
model.frame.bayesnecformula | Extracting the model frame from a 'bayesnecformula'
models | models
nec | Extracts the predicted NEC value as desired from an object of class 'bayesnecfit' or 'bayesmanecfit'.
necsummary | Class 'necsummary' of models fitted with the 'brms' package
necsummary-class | Class 'necsummary' of models fitted with the 'brms' package
nec_data | Example data of non-linear decay
nsec | Extracts the predicted NSEC value as desired from an object of class 'bayesnecfit' or 'bayesmanecfit'.
plot.bayesmanecfit | plot.bayesmanecfit
plot.bayesnecfit | plot.bayesnecfit
posterior_epred_beta_binomial2 | posterior_epred_beta_binomial2
posterior_predict_beta_binomial2 | posterior_predict_beta_binomial2
prebayesnecfit | Class 'prebayesnecfit' of models fitted with the 'brms' package
prebayesnecfit-class | Class 'prebayesnecfit' of models fitted with the 'brms' package
predict.bayesmanecfit | predict.bayesmanecfit
predict.bayesnecfit | predict.bayesnecfit
print.bayesmanecfit | print.bayesmanecfit
print.bayesnecfit | print.bayesnecfit
print.manecsummary | print.manecsummary
print.necsummary | print.necsummary
pull_out | pull_out
pull_prior | pull_prior
rhat.bayesmanecfit | rhat.bayesmanecfit
rhat.bayesnecfit | rhat.bayesnecfit
sample_priors | sample_priors
show_params | show_params
summary.bayesmanecfit | summary.bayesmanecfit
summary.bayesnecfit | summary.bayesnecfit
update.bnecfit | Update an object of class 'bnecfit' as fitted by function 'bnec'.