Package: ibdsegments
Title: Identity by Descent Probability in Pedigrees
Version: 1.0.1
Authors@R: 
    person("Maarten", "Kruijver", , "maarten.kruijver@esr.cri.nz", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-6890-7632"))
Description: Identity by Descent (IBD) distributions in pedigrees. A Hidden Markov
    Model is used to compute identity coefficients, simulate IBD segments and
    to derive the distribution of total IBD sharing and segment count across
    chromosomes. The methods are applied in Kruijver (2025) 
    <doi:10.3390/genes16050492>. The probability that the total IBD sharing
    is zero can be computed using the method of Donnelly (1983)
    <doi:10.1016/0040-5809(83)90004-7>.
License: GPL (>= 2)
Encoding: UTF-8
RoxygenNote: 7.3.2
LinkingTo: Rcpp
Imports: Rcpp, pedtools, expm
Suggests: testthat (>= 3.0.0), ribd, ggplot2
Config/testthat/edition: 3
NeedsCompilation: yes
Packaged: 2025-04-29 16:50:03 UTC; maart
Author: Maarten Kruijver [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-6890-7632>)
Maintainer: Maarten Kruijver <maarten.kruijver@esr.cri.nz>
Repository: CRAN
Date/Publication: 2025-05-02 09:30:05 UTC
Built: R 4.4.1; x86_64-apple-darwin20; 2025-05-02 09:57:03 UTC; unix
Archs: ibdsegments.so.dSYM
