# Flexible cFDR

## Documentation for package ‘fcfdr’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

binary_cfdr | Perform cFDR leveraging binary auxiliary covariates
corr_plot | Violin plot of p-values for quantiles of q
flexible_cfdr | Perform Flexible cFDR
log10pv_plot | Plot -log10(p) against -log10(v) and colour by q
match_ind_maf | Function to downsample independent SNPs to match MAF distribution of whole set.
parameters_in_locfdr | parameters_in_locfdr
pv_plot | Plot p against v and colour by q
stratified_qqplot | Stratified Q-Q plot.
T1D_application_data | Data for T1D application