apply_combat	apply_combat
calculate_fiber_fstats	calculate_fiber_fstats
check_rec_pres	check_rec_pres
clean_data	clean_data
colMeanVars	colMeanVars
compare_decompositions	compare_decompositions
compute_associations	compute_associations
compute_donor_props	compute_donor_props
compute_LR_interact	compute_LR_interact
convert_gn	convert_gn
count_word	count_word
determine_ranks_tucker	determine_ranks_tucker
form_tensor	form_tensor
get_all_lds_factor_plots	get_all_lds_factor_plots
get_callouts_annot	get_callouts_annot
get_ctype_exp_var	get_ctype_exp_var
get_ctype_prop_associations	get_ctype_prop_associations
get_ctype_subc_prop_associations	get_ctype_subc_prop_associations
get_ctype_vargenes	get_ctype_vargenes
get_donor_meta	get_donor_meta
get_factor_exp_var	get_factor_exp_var
get_fstats_pvals	get_fstats_pvals
get_gene_modules	get_gene_modules
get_gene_set_vectors	get_gene_set_vectors
get_indv_subtype_associations	get_indv_subtype_associations
get_intersecting_pathways	get_intersecting_pathways
get_leading_edge_genes	get_leading_edge_genes
get_lm_pvals	get_lm_pvals
get_max_correlations	get_max_correlations
get_meta_associations	get_meta_associations
get_min_sig_genes	get_min_sig_genes
get_module_enr	get_module_enr
get_normalized_variance	get_normalized_variance
get_num_batch_ranks	get_num_batch_ranks
get_one_factor	get_one_factor
get_one_factor_gene_pvals	get_one_factor_gene_pvals
get_pseudobulk	get_pseudobulk
get_real_fstats	get_real_fstats
get_reconstruct_errors_svd	get_reconstruct_errors_svd
get_significance_vectors	get_significance_vectors
get_subclusters	get_subclusters
get_subclust_de_hmaps	get_subclust_de_hmaps
get_subclust_enr_dotplot	get_subclust_enr_dotplot
get_subclust_enr_fig	get_subclust_enr_fig
get_subclust_enr_hmap	get_subclust_enr_hmap
get_subclust_umap	get_subclust_umap
get_subtype_prop_associations	get_subtype_prop_associations
get_sums	get_sums
ht_clusters	ht_clusters
identify_sex_metadata	identify_sex_metadata
initialize_params	initialize_params
instantiate_scMinimal	instantiate_scMinimal
is_GO_id	is_GO_id
make_new_container	make_new_container
merge_small_clusts	merge_small_clusts
nmf_unfolded	nmf_unfolded
normalize_counts	normalize_counts
normalize_pseudobulk	normalize_pseudobulk
norm_var_helper	norm_var_helper
parse_data_by_ctypes	parse_data_by_ctypes
pca_unfolded	pca_unfolded
plotDEheatmap_conos	plotDEheatmap_conos
plot_donor_matrix	plot_donor_matrix
plot_donor_props	plot_donor_props
plot_donor_sig_genes	plot_donor_sig_genes
plot_dscore_enr	plot_dscore_enr
plot_gsea_hmap	plot_gsea_hmap
plot_gsea_hmap_w_similarity	plot_gsea_hmap_w_similarity
plot_gsea_sub	plot_gsea_sub
plot_loadings_annot	plot_loadings_annot
plot_mod_and_lig	plot_mod_and_lig
plot_multi_module_enr	plot_multi_module_enr
plot_rec_errors_bar_svd	plot_rec_errors_bar_svd
plot_rec_errors_line_svd	plot_rec_errors_line_svd
plot_scores_by_meta	plot_scores_by_meta
plot_select_sets	plot_select_sets
plot_stability_results	plot_stability_results
plot_subclust_associations	plot_subclust_associations
prep_LR_interact	prep_LR_interact
project_new_data	project_new_data
reduce_dimensions	reduce_dimensions
reduce_to_vargenes	reduce_to_vargenes
render_multi_plots	render_multi_plots
reshape_loadings	reshape_loadings
run_fgsea	run_fgsea
run_gsea_one_factor	run_gsea_one_factor
run_hypergeometric_gsea	run_hypergeometric_gsea
run_jackstraw	run_jackstraw
run_stability_analysis	run_stability_analysis
run_tucker_ica	run_tucker_ica
sample_fibers	sample_fibers
scale_fontsize	scale_fontsize
scale_variance	scale_variance
seurat_to_scMinimal	seurat_to_scMinimal
shuffle_fibers	shuffle_fibers
stack_tensor	stack_tensor
stop_wrap	stop_wrap
subset_scMinimal	subset_scMinimal
test_container	test_container
tucker_ica_helper	tucker_ica_helper
update_params	update_params
vargenes_anova	vargenes_anova
