acen_hg19	acen_hg19
acen_hg38	acen_hg38
analyze_allele	analyze_allele
analyze_joint	analyze_joint
annot_cm	annot_cm
annot_segs	annot_segs
approx_phi_post	approx_phi_post
approx_theta_post_s2	approx_theta_post_s2
approx_theta_post_s3	approx_theta_post_s3
bulk_example	bulk_example
calc_allele_lik_s2	calc_allele_lik_s2
calc_allele_lik_s3	calc_allele_lik_s3
calc_allele_LLR	calc_allele_LLR
calc_exp_LLR	calc_exp_LLR
calc_trans_mat_s15	calc_trans_mat_s15
calc_trans_mat_s7	calc_trans_mat_s7
check_cols	check_cols
check_matrix	check_matrix
chrom_sizes_hg19	chrom_sizes_hg19
chrom_sizes_hg38	chrom_sizes_hg38
classify_alleles	classify_alleles
combine_bulk	combine_bulk
dbbinom	dbbinom
df_allele_example	df_allele_example
dpoilog	dpoilog
filter_genes	filter_genes
fit_gamma	fit_gamma
fit_lnpois_cpp	fit_lnpois_cpp
fit_ref_sse	fit_ref_sse
forward_back_allele	forward_back_allele
gaps_hg19	gaps_hg19
gaps_hg38	gaps_hg38
generate_postfix	generate_postfix
gene_counts_example	gene_counts_example
get_allele_bulk	get_allele_bulk
get_allele_hmm_s2	get_allele_hmm_s2
get_allele_hmm_s3	get_allele_hmm_s3
get_bulk	get_bulk
get_exp_bulk	get_exp_bulk
get_trans_probs_s15	get_trans_probs_s15
get_trans_probs_s7	get_trans_probs_s7
gtf_hg19	gtf_hg19
gtf_hg38	gtf_hg38
gtf_mm10	gtf_mm10
likelihood_allele	likelihood_allele
logSumExp	logSumExp
l_bbinom	l_bbinom
l_lnpois	l_lnpois
plot_bulks	plot_bulks
plot_psbulk	plot_psbulk
pre_likelihood_hmm	pre_likelihood_hmm
ref_hca	ref_hca
ref_hca_counts	ref_hca_counts
run_allele_hmm_s3	run_allele_hmm_s3
run_allele_hmm_s5	run_allele_hmm_s5
run_joint_hmm_s15	run_joint_hmm_s15
run_joint_hmm_s7	run_joint_hmm_s7
segs_example	segs_example
smooth_segs	smooth_segs
switch_prob_cm	switch_prob_cm
theta_hat_seg	theta_hat_seg
vcf_meta	vcf_meta
viterbi_allele	viterbi_allele
viterbi_joint	viterbi_joint
viterbi_joint_mat	viterbi_joint_mat
