geneHapR-package	geneHapR-package
AccINFO	DataSet
addINFO	addINFO
addPromoter	addPromoter
as.haplotype	ashaplotype
ashaplotype	ashaplotype
china	DataSet
compareAllSites	sites_compar
DataSet	DataSet
displayVarOnGeneModel	displayVarOnGeneModel
filterLargeP.link	filterLargep.link
filterLargep.link	filterLargep.link
filterLargeVCF	filterLargeVCF
filter_hap	filter_hap
filter_hmp	filter_hmp
filter_plink.pedmap	filter_plink.pedmap
filter_table	filter_table
filter_vcf	filter_vcf
geneHapR	geneHapR-package
getGenePOS	getGenePOS
getGeneRanges	getGeneRanges
getHapGroup	network
get_hapNet	network
gff	DataSet
gffSetATGas0	SetATGas0
gt.geno	DataSet
hap2hmp	hap2hmp
hapDistribution	hapDistribution
hapResult	DataSet
hapSetATGas0	SetATGas0
hapVsPheno	hapVsPheno
hapVsPhenoPerSite	hapVsPhenoPerSite
hapVsPhenos	hapVsPhenos
hap_summary	hap_summary
hmp2hap	hap2hmp
import_AccINFO	import_AccINFO
import_bed	import_bed
import_gff	import_gff
import_hap	import_hap
import_MultipleAlignment	import_MultipleAlignment
import_plink.pedmap	import_plink.pedmap
import_seqs	import_seqs
import_vcf	import_vcf
LDheatmap	LDheatmap
network	network
pheno	DataSet
plink.pedmap2hap	plink.pedmap2hap
plotEFF	plotEFF
plotHapNet	plotHapNet
plotHapTable	plotHapTable
plotHapTable2	plotHapTable2
plot_LDheatmap	LDheatmap
seqs	DataSet
seqs2hap	seqs2hap
SetATGas0	SetATGas0
siteEFF	siteEFF
sites	addINFO
sites_compar	sites_compar
table2hap	table2hap
trimSeqs	seqs2hap
vcf	DataSet
vcf2hap	vcf2hap
write.hap	write.hap
