# Genetic and Isotopic Assignment Accounting for Habitat Suitability

## Documentation for package ‘gaiah’ version 0.0.5

- DESCRIPTION file.
- Package NEWS.

## Help Pages

breeding_wiwa_genetic_posteriors | Posterior probs of genetic region origin from Leave-one-out cross validation for breeding WIWAs
breeding_wiwa_isotopes | Isotope values, latitude, longitude and more data from 357 breeding Wilson's warblers
comboize | combine genetics, isotopes, and habitat raster with exponents as given
comboize_and_fortify | prepare fortified output for multipanel plot
example_isotope_posteriors | Output of 'isotope_posterior_probs' for two migrant birds.
extract_isopredictions | Add the isomap prediction and sd in columns attached to the feather isotope data frame
gaiah | gaiah: Genetic and Isotopic Assignment Accounting for Habitat Suitability
genetic_posteriors2rasters | Convert posteriors to particular genetic reporting groups into raster
genetic_regions | RasterStack showing the 6 genetic regions that Wilson's warblers may be assigned to
get_wrld_simpl | return the wrld_simpl data set from maptools
great_circle_raster | return a raster of great circle distances (in km)
group_birds_by_location | Group bird isotope data by locations
isomap2raster | convert columns of an ISOMAP isoscape to a raster object
isomap_job54152_prediction | Predicted isotope values from ISOMAP
isotope_posterior_probs | compute posterior probabilities of origin given isotope values
migrant_wiwa_genetic_posteriors | Posterior probs of genetic region of origin for 926 WIWAs sampled during migration
migrant_wiwa_isotopes | Isotope values and meta data for 688 migrating Wilson's Warblers
wiwa_breed | a raster of the breeding range of Wilson's warbler
wiwa_habitat_unclipped | RasterLayer showing the MaxEnt habitat suitability model unclipped by the known breeding range
wrld_simpl | Simple map of the world