compare_fits	compare_fits
cost	likelihood
deviance_poisson_nmf	likelihood
de_analysis	de_analysis
de_analysis_control_default	de_analysis
embedding_plot_2d	embedding_plots
embedding_plot_2d_ggplot_call	embedding_plots
fit_multinom_model	fit_multinom_model
fit_poisson_nmf	fit_poisson_nmf
fit_poisson_nmf_control_default	fit_poisson_nmf
fit_topic_model	fit_topic_model
init_poisson_nmf	fit_poisson_nmf
init_poisson_nmf_from_clustering	fit_poisson_nmf
loadings_plot	loadings_plot
loadings_plot_ggplot_call	loadings_plot
loglik_multinom_topic_model	likelihood
loglik_poisson_nmf	likelihood
loglik_vs_rank_ggplot_call	plot_loglik_vs_rank
merge_topics	merge_topics
multinom2poisson	multinom2poisson
pbmc_facs	pbmc_facs
pca_from_topics	embeddings_from_topics
pca_hexbin_plot	embedding_plots
pca_hexbin_plot_ggplot_call	embedding_plots
pca_plot	embedding_plots
plot.multinom_topic_model_fit	structure_plot
plot.poisson_nmf_fit	structure_plot
plot.topic_model_de_analysis	volcano_plot
plot_loglik_vs_rank	plot_loglik_vs_rank
plot_progress	plot_progress
poisson2multinom	poisson2multinom
predict.multinom_topic_model_fit	predict
predict.poisson_nmf_fit	predict
print.summary.multinom_topic_model_fit	summary.poisson_nmf_fit
print.summary.poisson_nmf_fit	summary.poisson_nmf_fit
run_homer	run_homer
select	select_loadings
select.multinom_topic_model_fit	select_loadings
select.poisson_nmf_fit	select_loadings
select_loadings	select_loadings
simulate_count_data	simulate_count_data
simulate_multinom_gene_data	simulate_gene_data
simulate_poisson_gene_data	simulate_gene_data
simulate_toy_gene_data	simulate_toy_gene_data
structure_plot	structure_plot
structure_plot_default_embed_method	structure_plot
structure_plot_ggplot_call	structure_plot
summary.multinom_topic_model_fit	summary.poisson_nmf_fit
summary.poisson_nmf_fit	summary.poisson_nmf_fit
tsne_from_topics	embeddings_from_topics
tsne_plot	embedding_plots
umap_from_topics	embeddings_from_topics
umap_plot	embedding_plots
volcano_plot	volcano_plot
volcano_plotly	volcano_plot
volcano_plot_do_label_default	volcano_plot
volcano_plot_ggplot_call	volcano_plot
volcano_plot_ly_call	volcano_plot
