# Shrinkage Based Forest Plots

## Documentation for package ‘bonsaiforest’ version 0.1.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

ahr_estimation | Average Hazard Ratio Estimation
ahr_from_km | Average Hazard Estimation based on Kaplan-Meier Estimates
compare | Compare Treatment Estimate Methods
design_dummy1 | Design Dummy Subgroup x_1a
design_matrix1 | Design Matrix Subgroup x_1a
elastic_net | Elastic Net Penalization Model Estimation
elastic_net_fit_bin | Elastic Net Fit Binary
elastic_net_fit_surv | Elastic Net Fit Survival
elastic_net_surv | H0, Coefficients Elastic Net Survival Model and Matrices
est_coef_bin1 | Estimated coefficients elastic net Binary
example_data | Example data
generate_stacked_data | Generation of Stacked Data by Subgroups
horseshoe | Bayesian Shrinkage Model Estimation
horseshoe_fit_bin | Horseshoe Fit Binary
horseshoe_fit_surv | Horseshoe Fit Survival
lor_estimation | Estimation of Log-Odds Ratio
naive | Naive Model Estimation
naivepop | Naive Overall Population Model Estimation
naivepop_fit_bin | Naivepop Fit Binary
naivepop_fit_surv | Naivepop Fit Survival
naive_fit_bin | Naive Fit Binary
naive_fit_surv | Naive Fit Survival
plot.compare.data | Compare Forest Plots
plot.summary.elastic_net | Forest plot Summary Elastic Net
plot.summary.horseshoe | Forest plot Summary Horseshoe
plot.summary.naive | Forest plot Summary Naive
preprocess | Data Preprocessing
print.summary.elastic_net | Print Function for Elastic Net Summary
print.summary.horseshoe | Print Function for Horseshoe Summary
print.summary.naive | Print Function for Naive Summary
print.summary.naivepop | Print Function for Naivepop Summary
simul_covariates | Generation of a Design Matrix for Simulations
simul_data | Simulate Covariates and Progression Free Survival Data
simul_pfs | Simulation of Progression Free Survival Times
subgroups | Subgroup Treatment Effect
summary.elastic_net | Summary Elastic Net Function
summary.horseshoe | Summary Horseshoe Function
summary.naive | Summary Naive
summary.naivepop | Summary Naivepop Function
survival_curves | Average Survival Curves
trt_horseshoe | Subgroup Treatment Effect Horseshoe