# Intuitive Construction of Joint Priors for Variance Parameters

## Documentation for package ‘makemyprior’ version 1.2.2

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

compile_stan | Compile stan-model
create_stan_file | Create a "skeleton" for custom Stan code
eval_joint_prior | Evaluate the joint variance prior
eval_pc_prior | Evaluate PC prior for variance proportion
expit | expit
extract_posterior_effect | Extract the posterior of a random effect
extract_posterior_parameter | Extract the posterior parameter estimate
find_pc_prior_param | Find suitable PC prior parameters
get_parameter_order | Internal variance parameter order
inference_inla | Run inference
inference_stan | Run inference
latin_data | Latin square experiment data
logit | logit
makemyprior_example_model | Returning a simple example prior object
makemyprior_gui | Graphical prior construction
makemyprior_models | List available priors, latent models and likelihoods
makemyprior_plotting | List of available plotting functions
make_eval_prior_data | Evaluate the joint variance prior
make_prior | Making a prior object
mc | Define latent component
neonatal_data | Neonatal mortality data
plot.mmp_inla | Plotting
plot.mmp_prior | Plotting
plot.mmp_stan | Plotting
plot_marginal_prior | Plotting prior for a single parameter (weight or variance (not standard deviation))
plot_posterior_fixed | Plotting posterior distributions
plot_posterior_precision | Plotting posterior variances, standard deviations or precisions
plot_posterior_stan | Plotting posterior distributions
plot_posterior_stdev | Plotting posterior variances, standard deviations or precisions
plot_posterior_variance | Plotting posterior variances, standard deviations or precisions
plot_prior | Plotting prior distributions
plot_several_posterior_stan | Plotting several posterior distributions
plot_tree_structure | Plotting the prior tree structure graph
print.mmp_inla | Print
print.mmp_prior | Print
print.mmp_stan | Print
scale_precmat | Scaling precision matrix
summary.mmp_inla | Short summary
summary.mmp_prior | Short summary
summary.mmp_stan | Short summary
typical_variance | Compute the typical variance
wheat_data | Genomic wheat breeding model data