# Draw Ordered Oxford Grids and Chord Diagrams

## Documentation for package ‘macrosyntR’ version 0.3.3

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

compute_linkage_groups | Compute Linkage groups
compute_macrosynteny | Compute significant macrosynteny blocks
get_syntenic_genes | get the syntenic genes as a table
load_orthologs | load orthologs with their genomic coordinates.
plot_chord_diagram | plot the Macro-synteny as a chord diagram
plot_macrosynteny | Plot Macro-synteny
plot_oxford_grid | plot the Macro-synteny as an oxford grid.
reorder_macrosynteny | Reorder the mbh_df before plotting
reorder_multiple_macrosyntenies | Reorder the chromosomes of two or more species before plotting
reverse_species_order | Reverse order of the species in an orthologs_df.
subset_linkage_orthologs | Subset Orthologs contained in conserved linkage groups