# Quantify the Contractile Nature of Vessels Monitored under an Operating Microscope

## Documentation for package ‘vmeasur’ version 0.1.4

- DESCRIPTION file.

## Help Pages

calibrate_pixel_size | Calibrate the pixel size using a test image
example_vessel | Example lymphatic width dataset
output_dir | Set the output directory
quantify_directory | Quantify the content of an entire directory of sub-directories at once
quantify_mean_width | Quantify the vessel width over an entire ROI
quantify_mean_width_sections | Quantify the contractility of a vessel in sections along it's length
quantify_width_position | Quantify the width of a vessel continuously along it's length
scratch_dir | Set the scratch directory for vmeasur
select_roi | Select a ROI from a video file
threshold_apply | Threshold a video with pre-determined parameters
threshold_vessel | Apply a threshold to a single frame