Package: smartsnp
Type: Package
Title: Fast Multivariate Analyses of Big Genomic Data
Version: 1.2.0
Authors@R: c(
    person("Salvador", family = "Herrando-Perez", email = "salherra@gmail.com",
           role = c("aut"), comment = c(ORCID = "0000-0001-6052-6854")),
    person("Ray", family = "Tobler", email = "tingalingx@gmail.com",
           role = c("ctb"), comment = c(ORCID = "0000-0002-4603-1473")),
    person("Christian", family = "Huber", email = "christian.domitian.huber@gmail.com",
           role = c("ctb", "cre"), comment = c(ORCID = "0000-0002-2267-2604")))
Maintainer: Christian Huber <christian.domitian.huber@gmail.com>
Description: Fast computation of multivariate analyses of small (10s to 100s markers) to big (1000s to 100000s) genotype data. Runs Principal Component Analysis allowing for centering, z-score standardization and scaling for genetic drift, projection of ancient samples to modern genetic space and multivariate tests for differences in group location (Permutation-Based Multivariate Analysis of Variance) and dispersion (Permutation-Based Multivariate Analysis of Dispersion).
Language: en-GB
License: MIT + file LICENSE
URL: https://christianhuber.github.io/smartsnp/
BugReports: https://github.com/ChristianHuber/smartsnp/issues
Depends: R (>= 3.6.0)
VignetteBuilder: knitr
Imports: bootSVD, data.table, foreach, Rfast, RSpectra, vegan, vroom,
        Rcpp,
Suggests: markdown, knitr, rmarkdown
RoxygenNote: 7.1.1
Encoding: UTF-8
LinkingTo: Rcpp, RcppArmadillo
NeedsCompilation: yes
Packaged: 2025-06-09 20:14:02 UTC; cdh5313
Author: Salvador Herrando-Perez [aut] (ORCID:
    <https://orcid.org/0000-0001-6052-6854>),
  Ray Tobler [ctb] (ORCID: <https://orcid.org/0000-0002-4603-1473>),
  Christian Huber [ctb, cre] (ORCID:
    <https://orcid.org/0000-0002-2267-2604>)
Repository: CRAN
Date/Publication: 2025-06-09 23:50:02 UTC
Built: R 4.3.3; aarch64-apple-darwin20; 2025-06-10 00:10:32 UTC; unix
Archs: smartsnp.so.dSYM
