# 2D and 3D Movement-Based Kernel Density Estimates (MKDEs)

## Documentation for package ‘mkde’ version 0.4

- DESCRIPTION file.

## Help Pages

mkde-package | Movement-based kernel density estimates (MKDEs) in 2 or 3 spatial dimensions.
computeAreaRaster | Calculate cell areas from elevation raster.
computeContourValues | Find thresholds for contour intervals
computeSizeMKDE | Compute the area or volume of an MKDE.
condor | California condor locations
condordem | A RasterLayer containing a digital elevation model (DEM) for the condor data
condordem120 | A RasterLayer containing a digital elevation model (DEM) for the condor data
deselectLocationsOutsideBounds | Flag 3D locations with out-of-bounds z-coordinates
deselectNonMovementSteps | Flag non-movements so they are excluded from MKDE estimation
dugong | Dugong locations
dugongdem | A RasterLayer containing bathymetry for the dugong data
estVarMKDE | Estimate move variances for 3D MKDE.
initializeAreaRaster | Initialize an area raster for a 2.5D MKDE.
initializeDensity | Calculate raster of density values for MKDE.
initializeMKDE2D | Set up a 2D MKDE object.
initializeMKDE3D | Set up a 3D MKDE object.
initializeMovementData | Initialize a movement data list
mkde | Movement-based kernel density estimates (MKDEs) in 2 or 3 spatial dimensions.
mkde2Dgrid | Movement-based kernel density estimate (MKDE) in 2D using Rcpp
mkde2Dinteraction | Probability of 2D spatial-temporal interaction.
mkde3Dgrid | Movement-based kernel density estimate (MKDE) in 3D using Rcpp
mkde3Dinteraction | Probability of 3D spatial-temporal interaction.
mkdeToTerra | MKDE to RasterLayer or RasterStack
panda | Giant panda locations
pandadem | A RasterLayer containing a digital elevation model (DEM) for the panda data
plotMKDE | Make an image plot of an MKDE.
setMaximumZfromConstant | Initialize maximum allowable z-axis coordinates to a constant value.
setMaximumZfromRaster | Initialize maximum z-axis value from a raster
setMinimumZfromConstant | Set minimum z-axis value to a constant.
setMinimumZfromRaster | Set minimum z-axis values from a raster
writeInterpolatedPathVTK | Write path to VTK.
writeObservedLocationVTK | Write observed locations to VTK.
writeRasterToVTK | Write a 2D raster to XDMF XML wrapper and binary data file.
writeRasterToXDMF | Write a 2D raster to XDMF XML wrapper and binary data file.
writeToGRASS | Write MKDE to a GRASS GIS 3D ASCII raster file.
writeToVTK | Write MKDE to an ASCII Visualization Tool Kit (VTK) structured grid file.
writeToXDMF | Write 3D MKDE to XDMF XML wrapper and binary data file.