# Computing Graph Structures on WikiPathways

## Documentation for package ‘WayFindR’ version 0.3.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

as.graphNEL | Convert igraph object to Ragraph
collectAnchors | Utility Functions to Parse GPML FIles
collectEdges | Utility Functions to Parse GPML FIles
collectEntries | Utility Functions to Parse KGML FIles
collectGroups | Utility Functions to Parse GPML FIles
collectLabels | Utility Functions to Parse GPML FIles
collectNodes | Utility Functions to Parse GPML FIles
collectReactions | Utility Functions to Parse KGML FIles
collectRelations | Utility Functions to Parse KGML FIles
collectShapes | Utility Functions to Parse GPML FIles
cycleSubgraph | Finding Cycles in Biological Pathways
edgeColors | GPML GraphingR Data
edgeLegend | Converting GPML FIles to Igraph Objects
edgeTypes | GPML GraphingR Data
findCycles | Finding Cycles in Biological Pathways
gpml-cycles | Finding Cycles in Biological Pathways
gpml-data | GPML GraphingR Data
gpml-utility | Utility Functions to Parse GPML FIles
GPMLtoIgraph | Converting GPML FIles to Igraph Objects
interpretCycle | Finding Cycles in Biological Pathways
kgml-utility | Utility Functions to Parse KGML FIles
KGMLtoIgraph | Converting GPML FIles to Igraph Objects
nodeColors | GPML GraphingR Data
nodeLegend | Converting GPML FIles to Igraph Objects
nodeShapes | GPML GraphingR Data