@Manual{R-ciftiTools,
  title = {ciftiTools: Tools for Reading, Writing, Viewing
    and Manipulating CIFTI Files},
  author = {Amanda Mejia and Damon Pham},
  note = {R package version 0.8.0},
  url = {https://github.com/mandymejia/ciftiTools},
  year = {2021},
}

@Misc{pham2021ciftitools,
  title = {ciftiTools: A package for reading, writing,
    visualizing and manipulating CIFTI files in R},
  author = {Damon D Pham and John Muschelli and Amanda F
    Mejia},
  year = {2021},
  url = {https://doi.org/10.1016/j.neuroimage.2022.118877},
}

@Manual{R-pesel,
  title = {pesel: Automatic Estimation of Number of
    Principal Components in PCA},
  author = {Piotr Sobczyk and Julie Josse and Malgorzata
    Bogdan},
  year = {2020},
  note = {R package version 0.7.3},
  url = {https://github.com/psobczyk/pesel},
}

@Article{sobyczyk2017pesel,
  title = {Bayesian Dimensionality Reduction With PCA 
    Using Penalized Semi-Integrated Likelihood},
  author = {Damon D Pham and John Muschelli and Amanda F
    Mejia},
  journal = {Journal of Computational and Graphical 
    Statistics},
  year = {2017},
  url = {https://doi.org/10.1080/10618600.2017.1340302},
}

@Manual{R-excursions,
  title = {excursions: Excursion Sets and Contour
    Credibility Regions for Random Fields},
  author = {David Bolin and Finn Lindgren},
  year = {2021},
  note = {R package version 2.5.2},
  url = {https://github.com/davidbolin/excursions},
}

@Article{excursions2018,
  title = {Calculating Probabilistic Excursion Sets and
    Related Quantities Using {excursions}},
  author = {David Bolin and Finn Lindgren},
  journal = {Journal of Statistical Software},
  year = {2018},
  volume = {86},
  number = {5},
  pages = {1--20},
  doi = {10.18637/jss.v086.i05},
}

@Manual{R-INLA,
  title = {INLA: Full Bayesian Analysis of Latent Gaussian
    Models using Integrated Nested Laplace Approximations},
  author = {Havard Rue and Finn Lindgren and Elias {Teixeira
    Krainski}},
  year = {2021},
  note = {R package version 21.11.22},
}

@Article{INLA2018a,
  title = {Spatial modelling with {INLA}: {A} review},
  author = {Haakon Bakka and H{\aa}vard Rue and Geir-Arne
    Fuglstad and Andrea I. Riebler and David Bolin and
    Janine Illian and Elias Krainski and Daniel P. Simpson
    and Finn K. Lindgren},
  journal = {WIRES (Invited extended review)},
  year = {2018},
  volume = {xx},
  number = {Feb},
  pages = {xx--xx},
  url = {http://arxiv.org/abs/1802.06350},
}

@Manual{R-SQUAREM,
  title = {SQUAREM: Squared Extrapolation Methods for
    Accelerating EM-Like Monotone Algorithms},
  author = {Ravi Varadhan},
  year = {2021},
  note = {R package version 2021.1},
  url = {https://coah.jhu.edu/people/Faculty_personal_Pages/
    Varadhan.html},
}

@Article{SQUAREM2020,
  title = {{SQUAREM}: An {R} Package for Off-the-Shelf
    Acceleration of {EM}, {MM} and Other {EM}-Like Monotone
    Algorithms},
  author = {Yu Du and Ravi Varadhan},
  journal = {Journal of Statistical Software},
  year = {2020},
  volume = {92},
  number = {7},
  pages = {1--41},
  doi = {10.18637/jss.v092.i07},
}

@Manual{R-ica,
  title = {ica: Independent Component Analysis},
  author = {Nathaniel E. Helwig},
  year = {2018},
  note = {R package version 1.0-2},
  url = {https://CRAN.R-project.org/package=ica},
}