# 'teal' Modules for Standard Clinical Outputs

## Documentation for package ‘teal.modules.clinical’ version 0.9.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

teal.modules.clinical-package | 'teal' Modules for Standard Clinical Outputs
add_expr | Expression List
as_num | Parse text input to numeric vector
as_num.character | Parse text input to numeric vector
as_num.default | Parse text input to numeric vector
as_num.factor | Parse text input to numeric vector
as_num.logical | Parse text input to numeric vector
as_num.numeric | Parse text input to numeric vector
bracket_expr | Expressions in Brackets
call_concatenate | Concatenate expressions via a binary operator
clean_description | Clean up categorical variable description
color_lab_values | Mapping function for Laboratory Table
column_annotation_label | Get full label, useful for annotating plots
cs_to_des_filter | Convert choices_selected to data_extract_spec with only filter_spec
cs_to_des_select | Convert choices_selected to data_extract_spec with only select_spec
cs_to_filter_spec | Convert choices_selected to filter_spec
cs_to_select_spec | Convert choices_selected to select_spec
default_total_label | Default string for total column label
extract_input | Extracts html id for 'data_extract_ui'
ex_data | Simulated 'CDISC' Data for Examples
get_var_labels | Get variable labels
h_concat_expr | Expression Deparsing
is.cs_or_des | Whether object is of class 'teal.transform::choices_selected()'
pipe_expr | Expressions as a Pipeline
prepare_arm | Expression: Arm Preparation
prepare_arm_levels | Expression: Prepare Arm Levels
set_default_total_label | Default string for total column label
split_choices | Split 'choices_selected' objects with interactions into their component variables
split_col_expr | Split-Column Expression
split_interactions | Split interaction terms into their component variables
teal.modules.clinical | 'teal' Modules for Standard Clinical Outputs
tmc_ex_adae | Simulated 'CDISC' Data for Examples
tmc_ex_adaette | Simulated 'CDISC' Data for Examples
tmc_ex_adcm | Simulated 'CDISC' Data for Examples
tmc_ex_adeg | Simulated 'CDISC' Data for Examples
tmc_ex_adex | Simulated 'CDISC' Data for Examples
tmc_ex_adlb | Simulated 'CDISC' Data for Examples
tmc_ex_admh | Simulated 'CDISC' Data for Examples
tmc_ex_adqs | Simulated 'CDISC' Data for Examples
tmc_ex_adrs | Simulated 'CDISC' Data for Examples
tmc_ex_adsl | Simulated 'CDISC' Data for Examples
tmc_ex_adtte | Simulated 'CDISC' Data for Examples
tmc_ex_advs | Simulated 'CDISC' Data for Examples
tm_a_gee | teal Module: Generalized Estimating Equations (GEE) analysis
tm_a_mmrm | teal Module: Mixed Model Repeated Measurements (MMRM) Analysis
tm_g_barchart_simple | teal Module: Simple Bar Chart and Table of Counts per Category
tm_g_ci | teal Module: Confidence Interval Plot
tm_g_forest_rsp | teal Module: Forest Response Plot
tm_g_forest_tte | teal Module: Forest Survival Plot
tm_g_ipp | teal Module: Individual Patient Plots
tm_g_km | teal Module: Kaplan-Meier Plot
tm_g_lineplot | teal Module: Line Plot
tm_g_pp_adverse_events | teal Module: Patient Profile Adverse Events Table and Plot
tm_g_pp_patient_timeline | teal Module: Patient Profile Timeline Plot
tm_g_pp_therapy | teal Module: Patient Profile Therapy Table and Plot
tm_g_pp_vitals | teal Module: Patient Profile Vitals Plot
tm_t_abnormality | teal Module: Abnormality Summary Table
tm_t_abnormality_by_worst_grade | teal Module: Laboratory test results with highest grade post-baseline
tm_t_ancova | teal Module: ANCOVA Summary
tm_t_binary_outcome | teal Module: Binary Outcome Table
tm_t_coxreg | teal Module: Cox Regression Model
tm_t_events | teal Module: Events by Term
tm_t_events_by_grade | teal Module: Events by Grade
tm_t_events_patyear | teal Module: Event Rates Adjusted for Patient-Years
tm_t_events_summary | teal Module: Adverse Events Summary
tm_t_exposure | teal Module: Exposure Table for Risk management plan
tm_t_logistic | teal Module: Logistic Regression
tm_t_mult_events | teal Module: Multiple Events by Term
tm_t_pp_basic_info | teal Module: Patient Profile Basic Info
tm_t_pp_laboratory | teal Module: Patient Profile Laboratory Table
tm_t_pp_medical_history | teal Module: Patient Profile Medical History
tm_t_pp_prior_medication | teal Module: Patient Profile Prior Medication
tm_t_shift_by_arm | teal Module: Shift by Arm
tm_t_shift_by_arm_by_worst | teal Module: Shift by Arm by Worst Analysis Indicator Level
tm_t_shift_by_grade | teal Module: Grade Summary Table
tm_t_smq | teal Module: Adverse Events Table by Standardized MedDRA Query
tm_t_summary | teal Module: Summary of Variables
tm_t_summary_by | teal Module: Summarize Variables by Row Groups
tm_t_tte | teal Module: Time-To-Event Table